HMMER3/b [3.0 | March 2010] NAME PRP4 ACC PF08799.6 DESC pre-mRNA processing factor 4 (PRP4) like LENG 30 ALPH amino RF no CS yes MAP yes DATE Fri Oct 5 09:42:52 2012 NSEQ 61 EFFN 22.625549 CKSUM 794601493 GA 25.00 25.00; TC 25.10 25.20; NC 24.40 24.40; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -6.9933 0.71988 STATS LOCAL VITERBI -7.2405 0.71988 STATS LOCAL FORWARD -4.6744 0.71988 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 3.04687 4.71929 3.34316 2.25667 3.18510 2.78937 4.12825 2.88756 2.81535 1.90484 4.24878 3.90112 3.22086 3.17899 1.80620 3.60777 3.39439 2.94677 6.20575 3.70364 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00176 6.73805 7.46039 0.61958 0.77255 0.00000 * 1 3.92433 4.18160 7.34783 6.88907 5.87997 6.84161 7.61506 1.54308 6.84188 2.00572 5.61272 7.01535 7.06572 7.11590 7.00111 6.27764 3.05178 0.59469 7.94794 6.69848 1 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00176 6.73805 7.46039 0.61958 0.77255 0.48576 0.95510 2 4.04593 5.81058 4.85747 4.29035 3.88259 5.00676 3.97461 1.46996 1.63126 3.50529 4.02823 3.78624 5.38714 2.52294 1.78836 4.24635 3.25876 2.26803 6.38565 5.14353 2 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00176 6.73805 7.46039 0.61958 0.77255 0.48576 0.95510 3 2.10837 6.46682 3.17536 2.31400 4.13039 4.72814 4.91513 3.98915 1.81474 2.89747 4.34101 3.07847 3.67787 2.64216 1.71559 2.53057 3.51949 4.85782 6.89910 4.25771 3 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00176 6.73805 7.46039 0.61958 0.77255 0.48576 0.95510 4 2.63405 4.66647 4.27313 2.56552 4.06532 3.39176 4.95636 3.04300 1.44344 3.24771 3.74165 3.76869 5.15491 2.64568 1.37190 3.95688 4.19766 4.70388 6.80699 3.64939 4 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00176 6.73805 7.46039 0.61958 0.77255 0.48576 0.95510 5 6.45981 7.47945 8.25900 7.78756 3.46063 7.81669 7.66357 4.55592 7.71693 0.06888 4.92051 8.05191 7.54472 7.17473 7.43902 7.49444 6.61549 5.04549 7.35135 6.19050 5 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00176 6.73805 7.46039 0.61958 0.77255 0.48576 0.95510 6 5.83627 7.77249 6.01454 3.16953 7.55603 6.12393 5.85450 6.71692 3.90741 5.94278 6.88653 5.62027 6.47158 3.29779 0.13870 5.76303 5.87705 6.43715 7.80646 6.82411 6 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00176 6.73805 7.46039 0.61958 0.77255 0.48576 0.95510 7 2.24424 6.46787 3.18175 1.64219 5.81395 3.42611 4.91523 4.10337 2.18041 2.29496 5.50828 4.19539 5.12180 1.88674 2.12128 2.81965 4.18608 4.85905 6.89992 5.48841 7 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00176 6.73805 7.46039 0.61958 0.77255 0.48576 0.95510 8 3.43988 5.49601 6.02940 5.41643 3.58364 5.27761 3.77284 3.92779 3.47485 0.70004 2.45855 5.42354 5.64150 5.35057 2.08010 4.58702 4.34591 2.69594 6.11603 3.27327 8 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00176 6.73805 7.46039 0.61958 0.77255 0.48576 0.95510 9 3.96280 6.47468 3.58269 2.48064 5.82061 0.82019 4.92183 3.39428 2.21618 3.69308 5.51537 2.44809 5.12857 3.44666 2.82901 3.36260 4.19393 4.86583 6.90637 5.49540 9 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00176 6.73805 7.46039 0.61958 0.77255 0.48576 0.95510 10 3.30444 7.35042 4.27984 0.48464 6.71319 5.22924 2.70977 6.22272 4.48779 5.68316 6.49587 4.70145 5.79210 1.69681 4.97041 4.72913 5.08739 3.81190 7.80243 6.35182 10 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00176 6.73805 7.46039 0.61958 0.77255 0.48576 0.95510 11 6.75548 8.09413 7.73790 7.79745 7.82616 6.77352 8.34025 7.91011 7.87657 3.47749 8.40100 7.82931 0.04042 8.16735 7.75153 7.01661 7.28405 7.60639 8.77066 8.08285 11 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00176 6.73805 7.46039 0.61958 0.77255 0.48576 0.95510 12 1.82649 6.50525 7.58732 7.20929 6.16637 7.13953 8.41871 0.59083 7.25544 4.47366 5.79753 7.38195 7.34770 7.63209 7.52328 6.66086 5.62924 1.36218 8.58579 7.26476 12 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00176 6.73805 7.46039 0.61958 0.77255 0.48576 0.95510 13 4.10441 2.20804 3.32840 5.26388 2.94938 5.25017 3.49875 2.52173 3.62757 2.58326 3.68947 5.34357 5.61596 5.25980 2.13755 4.55219 1.08187 3.05818 6.13151 4.95037 13 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00176 6.73805 7.46039 0.61958 0.77255 0.48576 0.95510 14 4.19243 4.13991 6.17237 5.55697 3.00364 5.36854 5.70116 2.06799 5.34006 0.71940 3.54261 3.75963 5.72465 5.46145 5.34084 4.68202 4.42397 2.72740 6.17716 2.01079 14 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00176 6.73805 7.46039 0.61958 0.77255 0.48576 0.95510 15 3.23119 7.60517 7.37874 7.42758 0.14256 6.98263 5.78939 6.45444 7.29974 5.53685 6.94280 3.43692 7.35019 6.89477 7.06640 6.43635 6.85084 6.37842 5.86218 3.25404 15 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00176 6.73805 7.46039 0.61958 0.77255 0.48576 0.95510 16 2.28748 6.76364 7.12450 7.20152 7.68501 0.13357 7.75823 7.30699 7.24726 6.94997 7.70439 6.50385 6.41437 7.27562 7.14497 5.10873 5.48902 6.28519 8.81972 8.02832 16 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00176 6.73805 7.46039 0.61958 0.77255 0.48576 0.95510 17 7.67360 8.57340 6.92498 0.00697 8.61246 6.97385 8.28638 8.94052 7.77870 8.04377 9.34574 7.54222 7.63135 7.91114 7.87358 7.79345 8.05278 8.54392 8.98430 8.71907 17 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00176 6.73805 7.46039 0.61958 0.77255 0.48576 0.95510 18 3.97247 6.48499 1.73853 3.65857 5.83058 1.86053 4.93099 5.31709 3.16775 3.95061 5.52629 2.85342 5.13656 3.51109 3.06432 1.91087 1.42124 4.87607 6.91715 5.50537 18 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00176 6.73805 7.46039 0.61958 0.77255 0.48576 0.95510 19 2.45924 6.46886 1.64778 2.13424 5.81531 3.94335 1.89468 5.30227 2.89548 4.77473 3.97833 2.56043 2.23501 3.50189 2.95702 3.04647 4.18607 4.86024 6.90071 5.48889 19 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00176 6.73805 7.46039 0.61958 0.77255 0.48576 0.95510 20 1.66772 6.44228 3.21684 2.28827 5.77688 2.94556 4.92265 3.36640 2.24104 2.68701 3.59590 3.36319 3.97549 3.36642 2.94912 2.97899 4.18793 3.59268 3.59543 2.22946 20 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00176 6.73805 7.46039 0.61958 0.77255 0.48576 0.95510 21 2.72245 6.57308 1.24835 1.46614 5.91669 2.59609 3.74748 5.40673 3.75046 4.87777 5.61648 4.25245 5.19918 2.12417 3.10009 2.72945 4.28413 4.96339 7.00424 5.58576 21 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00176 6.73805 7.46039 0.61958 0.77255 0.48576 0.95510 22 3.10667 6.85371 6.31319 5.48004 6.90433 5.59144 6.00659 6.21105 3.50681 5.69457 6.56502 5.62633 6.16057 5.17071 0.21900 3.92967 3.42884 3.33090 7.73905 6.67917 22 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00176 6.73805 7.46039 0.61958 0.77255 0.48576 0.95510 23 3.43849 2.96425 6.08251 5.46687 3.12828 3.50897 5.61761 2.64355 5.25044 1.90022 4.60623 5.44791 5.64745 5.38080 0.81459 4.59546 4.34617 3.22776 6.10968 2.57214 23 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00176 6.73805 7.46039 0.61958 0.77255 0.48576 0.95510 24 3.15373 6.46807 2.29021 1.64486 5.81437 4.72786 4.91479 5.30121 2.10385 2.68434 3.96768 3.28912 5.12136 2.05805 1.95254 3.31370 3.19388 4.85937 6.90001 3.53632 24 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00176 6.73805 7.46039 0.61958 0.77255 0.48576 0.95510 25 7.79812 8.51947 7.99014 7.83585 8.57321 7.09644 8.28156 8.84238 7.03775 7.92791 9.17681 8.11537 7.70671 7.87831 0.00637 8.07905 8.11479 8.49217 8.90766 8.66075 25 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00176 6.73805 7.46039 0.61958 0.77255 0.48576 0.95510 26 6.71499 7.65578 7.85732 7.71717 4.65015 7.40416 6.45865 5.21732 7.54474 0.22732 5.60196 7.26998 7.52651 7.13839 7.29406 7.06410 6.90138 5.61577 6.46874 1.77387 26 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00176 6.73805 7.46039 0.61958 0.77255 0.48576 0.95510 27 4.00931 4.14361 4.56922 4.00845 3.54856 3.88864 2.66654 3.60866 1.34316 3.21662 3.92174 4.49438 5.28165 3.71120 1.23291 2.80438 3.62462 4.29754 6.53760 3.31532 27 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00176 6.73805 7.46039 0.61958 0.77255 0.48576 0.95510 28 2.82792 6.46820 3.07538 2.11024 4.23287 3.93698 4.91471 5.30147 1.57667 4.77404 4.22739 2.55034 5.12129 1.95999 2.03956 2.45387 4.18563 3.66420 6.90010 4.33376 28 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00176 6.73805 7.46039 0.61958 0.77255 0.48576 0.95510 29 2.65474 4.03150 6.08653 5.47059 3.71363 5.28456 3.95338 2.43165 5.25339 0.64967 4.60544 5.44982 5.64800 3.55365 3.91773 4.59627 4.34632 1.94718 6.10959 4.93394 29 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00176 6.73805 7.46039 0.61958 0.77255 0.48576 0.95510 30 3.43199 5.57706 5.51060 1.67986 4.68184 3.65265 5.48417 2.75954 3.80053 1.05490 2.57926 5.14913 5.55451 2.86360 5.00546 4.46768 3.43913 2.31734 6.18718 4.99343 30 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00119 6.73747 * 0.61958 0.77255 0.00000 * //