HMMER3/b [3.0 | March 2010] NAME COX2-transmemb ACC PF09125.5 DESC Cytochrome C oxidase subunit II, transmembrane LENG 38 ALPH amino RF no CS yes MAP yes DATE Fri Oct 5 20:19:29 2012 NSEQ 2 EFFN 1.027344 CKSUM 3315869891 GA 25.00 25.00; TC 25.10 25.10; NC 22.40 21.30; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -7.6462 0.71955 STATS LOCAL VITERBI -8.0352 0.71955 STATS LOCAL FORWARD -4.4057 0.71955 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 1.97044 4.77818 3.32854 2.97555 2.72788 3.13934 2.93653 2.64796 2.76816 2.04752 3.57743 3.84766 4.23564 3.92735 3.71255 3.01516 2.91776 2.82297 3.80280 3.03044 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.00000 * 1 3.38592 5.52437 0.53844 2.60801 4.95522 3.49832 4.27441 4.62756 3.42873 4.18032 5.17848 3.17653 4.17517 3.52281 3.98065 3.31921 3.73575 4.23504 6.05410 4.78957 1 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 2 3.28544 5.42453 2.68567 0.63064 4.81979 3.52318 4.15703 4.34365 3.08390 3.91230 4.88629 3.17994 4.14790 3.37491 3.51732 3.24168 3.59690 3.99816 5.92687 4.66792 2 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 3 3.43254 5.16651 3.52066 3.32641 3.57608 3.77789 0.60127 4.18883 3.16323 3.63404 4.71346 3.71704 4.35458 3.70072 3.40220 3.50418 3.75267 3.91791 5.03280 3.52020 3 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 4 3.31292 5.25937 3.50907 3.08448 4.72362 3.75027 3.99310 4.17799 0.65825 3.67633 4.63229 3.48916 4.23730 3.17458 2.55770 3.34053 3.54728 3.87165 5.64978 4.51770 4 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 5 0.62414 4.39414 3.83570 3.65844 4.41853 3.20699 4.63588 3.59667 3.68435 3.46158 4.46673 3.71258 3.97885 3.99630 3.90188 2.74678 3.04796 3.19104 5.81068 4.65377 5 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 6 3.43254 5.16651 3.52066 3.32641 3.57608 3.77789 0.60127 4.18883 3.16323 3.63404 4.71346 3.71704 4.35458 3.70072 3.40220 3.50418 3.75267 3.91791 5.03280 3.52020 6 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 7 3.31292 5.25937 3.50907 3.08448 4.72362 3.75027 3.99310 4.17799 0.65825 3.67633 4.63229 3.48916 4.23730 3.17458 2.55770 3.34053 3.54728 3.87165 5.64978 4.51770 7 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 8 0.62414 4.39414 3.83570 3.65844 4.41853 3.20699 4.63588 3.59667 3.68435 3.46158 4.46673 3.71258 3.97885 3.99630 3.90188 2.74678 3.04796 3.19104 5.81068 4.65377 8 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 9 3.30018 4.64387 4.78375 4.42270 3.62161 4.40813 5.10188 0.74048 4.25809 2.15280 3.51887 4.62400 4.81927 4.58013 4.41877 3.94738 3.59813 1.91402 5.57217 4.33125 9 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 10 3.55103 4.92213 4.72263 4.37676 3.29831 4.40060 4.93020 2.53224 4.14219 0.55240 3.23977 4.62077 4.78683 4.42882 4.25856 4.03076 3.83446 2.65344 5.28423 4.08005 10 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 11 0.62414 4.39414 3.83570 3.65844 4.41853 3.20699 4.63588 3.59667 3.68435 3.46158 4.46673 3.71258 3.97885 3.99630 3.90188 2.74678 3.04796 3.19104 5.81068 4.65377 11 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 12 3.76283 5.11540 4.34708 4.15006 2.38900 4.23157 3.82733 3.73077 3.99946 3.09544 4.37245 4.15764 4.70271 4.22211 4.10937 3.86109 4.05398 3.61840 4.04145 0.55290 12 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 13 3.28544 5.42453 2.68567 0.63064 4.81979 3.52318 4.15703 4.34365 3.08390 3.91230 4.88629 3.17994 4.14790 3.37491 3.51732 3.24168 3.59690 3.99816 5.92687 4.66792 13 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 14 3.31292 5.25937 3.50907 3.08448 4.72362 3.75027 3.99310 4.17799 0.65825 3.67633 4.63229 3.48916 4.23730 3.17458 2.55770 3.34053 3.54728 3.87165 5.64978 4.51770 14 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 15 3.13258 4.86151 3.87319 3.82091 4.93149 0.36162 4.90759 4.62510 4.04660 4.23221 5.21992 4.03910 4.26194 4.34509 4.23363 3.31601 3.63931 4.08892 5.92554 5.04910 15 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 16 3.94773 5.19226 4.63675 4.43421 3.08868 4.13541 4.37305 4.00188 4.15879 3.33323 4.61744 4.52088 4.68293 4.52816 4.22380 4.14797 4.26790 3.90051 0.41828 3.07560 16 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 17 3.55103 4.92213 4.72263 4.37676 3.29831 4.40060 4.93020 2.53224 4.14219 0.55240 3.23977 4.62077 4.78683 4.42882 4.25856 4.03076 3.83446 2.65344 5.28423 4.08005 17 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 18 0.62414 4.39414 3.83570 3.65844 4.41853 3.20699 4.63588 3.59667 3.68435 3.46158 4.46673 3.71258 3.97885 3.99630 3.90188 2.74678 3.04796 3.19104 5.81068 4.65377 18 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 19 3.71523 5.02261 4.69863 4.48759 0.59277 4.30223 4.07181 3.21224 4.38996 2.51008 3.89936 4.41179 4.76177 4.46839 4.42668 3.95949 4.02079 3.22548 4.24368 2.57784 19 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 20 2.51345 4.43123 3.53535 3.38081 4.43045 3.15693 4.47369 4.00561 3.47821 3.70414 4.60996 3.54048 3.92587 3.80251 3.74360 0.68183 3.02089 3.46467 5.77779 4.52008 20 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 21 3.55103 4.92213 4.72263 4.37676 3.29831 4.40060 4.93020 2.53224 4.14219 0.55240 3.23977 4.62077 4.78683 4.42882 4.25856 4.03076 3.83446 2.65344 5.28423 4.08005 21 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 22 0.62414 4.39414 3.83570 3.65844 4.41853 3.20699 4.63588 3.59667 3.68435 3.46158 4.46673 3.71258 3.97885 3.99630 3.90188 2.74678 3.04796 3.19104 5.81068 4.65377 22 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 23 3.26749 4.77003 4.42767 4.05956 3.40241 4.09523 4.71796 2.61376 3.80633 1.95732 0.85810 4.29200 4.56863 4.17202 3.96982 3.64523 3.58519 2.65628 5.27959 4.06560 23 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 24 3.55103 4.92213 4.72263 4.37676 3.29831 4.40060 4.93020 2.53224 4.14219 0.55240 3.23977 4.62077 4.78683 4.42882 4.25856 4.03076 3.83446 2.65344 5.28423 4.08005 24 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 25 3.71523 5.02261 4.69863 4.48759 0.59277 4.30223 4.07181 3.21224 4.38996 2.51008 3.89936 4.41179 4.76177 4.46839 4.42668 3.95949 4.02079 3.22548 4.24368 2.57784 25 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 26 3.08099 4.54674 4.57662 4.26248 3.81835 4.05818 5.01524 2.09670 4.13627 2.45476 3.74410 4.39609 4.60936 4.47776 4.31541 3.59272 3.44010 0.68815 5.65478 4.40223 26 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 27 3.71523 5.02261 4.69863 4.48759 0.59277 4.30223 4.07181 3.21224 4.38996 2.51008 3.89936 4.41179 4.76177 4.46839 4.42668 3.95949 4.02079 3.22548 4.24368 2.57784 27 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 28 3.30018 4.64387 4.78375 4.42270 3.62161 4.40813 5.10188 0.74048 4.25809 2.15280 3.51887 4.62400 4.81927 4.58013 4.41877 3.94738 3.59813 1.91402 5.57217 4.33125 28 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 29 0.62414 4.39414 3.83570 3.65844 4.41853 3.20699 4.63588 3.59667 3.68435 3.46158 4.46673 3.71258 3.97885 3.99630 3.90188 2.74678 3.04796 3.19104 5.81068 4.65377 29 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 30 3.55103 4.92213 4.72263 4.37676 3.29831 4.40060 4.93020 2.53224 4.14219 0.55240 3.23977 4.62077 4.78683 4.42882 4.25856 4.03076 3.83446 2.65344 5.28423 4.08005 30 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 31 3.30018 4.64387 4.78375 4.42270 3.62161 4.40813 5.10188 0.74048 4.25809 2.15280 3.51887 4.62400 4.81927 4.58013 4.41877 3.94738 3.59813 1.91402 5.57217 4.33125 31 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 32 0.62414 4.39414 3.83570 3.65844 4.41853 3.20699 4.63588 3.59667 3.68435 3.46158 4.46673 3.71258 3.97885 3.99630 3.90188 2.74678 3.04796 3.19104 5.81068 4.65377 32 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 33 3.76283 5.11540 4.34708 4.15006 2.38900 4.23157 3.82733 3.73077 3.99946 3.09544 4.37245 4.15764 4.70271 4.22211 4.10937 3.86109 4.05398 3.61840 4.04145 0.55290 33 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 34 2.63085 4.47218 3.76711 3.55170 4.30623 3.29636 4.53797 3.47660 3.50152 3.32765 4.36664 3.69462 4.03104 3.88183 3.73451 2.83717 0.71226 3.13312 5.71245 4.52693 34 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 35 3.55103 4.92213 4.72263 4.37676 3.29831 4.40060 4.93020 2.53224 4.14219 0.55240 3.23977 4.62077 4.78683 4.42882 4.25856 4.03076 3.83446 2.65344 5.28423 4.08005 35 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 36 0.62414 4.39414 3.83570 3.65844 4.41853 3.20699 4.63588 3.59667 3.68435 3.46158 4.46673 3.71258 3.97885 3.99630 3.90188 2.74678 3.04796 3.19104 5.81068 4.65377 36 - H 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 37 2.63085 4.47218 3.76711 3.55170 4.30623 3.29636 4.53797 3.47660 3.50152 3.32765 4.36664 3.69462 4.03104 3.88183 3.73451 2.83717 0.71226 3.13312 5.71245 4.52693 37 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02242 4.20466 4.92701 0.61958 0.77255 0.48576 0.95510 38 3.43254 5.16651 3.52066 3.32641 3.57608 3.77789 0.60127 4.18883 3.16323 3.63404 4.71346 3.71704 4.35458 3.70072 3.40220 3.50418 3.75267 3.91791 5.03280 3.52020 38 - G 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01515 4.19739 * 0.61958 0.77255 0.00000 * //