Summary: Putative RRM domain
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Putative RRM domain Provide feedback
This is a putative RRM, RNA-binding, domain found only in fungi. It occurs in proteins annotated as Nrd1 yeast proteins, which are known to carry RRM domains. It is not homologous with any of the other RRM domains, eg RRM_1 PF00076.
External database links
This tab holds annotation information from the InterPro database.
InterPro entry IPR018835
This entry represents a putative RNA-binding domain found only in fungi. It occurs in proteins annotated as Nrd1, which are known to carry RNA recogntion motif (RRM) domains. It is not homologous with any of the other RRM domains, e.g. INTERPRO.
- the number of sequences which exhibit this architecture
a textual description of the architecture, e.g. Gla, EGF x 2, Trypsin.
This example describes an architecture with one
Gladomain, followed by two consecutive
EGFdomains, and finally a single
- the UniProt description of the protein sequence
- the number of residues in the sequence
- the Pfam graphic itself.
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We make a range of alignments for each Pfam-A family:
- the curated alignment from which the HMM for the family is built
- the alignment generated by searching the sequence database using the HMM
- Representative Proteomes (RPs) at 15%, 35%, 55% and 75% co-membership thresholds
- alignment generated by searching the NCBI sequence database using the family HMM
- alignment generated by searching the metagenomics sequence database using the family HMM
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1Cannot generate PP/Heatmap alignments for seeds; no PP data available
Key: available, not generated, — not available.
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Curation and family details
|Seed source:||Griffiths-Jones S,|
|Author:||Griffiths-Jones S, Coggill PC|
|Number in seed:||7|
|Number in full:||104|
|Average length of the domain:||54.50 aa|
|Average identity of full alignment:||47 %|
|Average coverage of the sequence by the domain:||6.11 %|
|HMM build commands:||
build method: hmmbuild -o /dev/null HMM SEED
search method: hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
|Family (HMM) version:||4|
|Download:||download the raw HMM for this family|
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