HMMER3/b [3.0 | March 2010] NAME Shal-type ACC PF11601.3 DESC Shal-type voltage-gated potassium channels LENG 28 ALPH amino RF no CS no MAP yes DATE Thu Oct 4 07:14:54 2012 NSEQ 4 EFFN 1.824219 CKSUM 1873896741 GA 20.50 20.50; TC 22.60 22.10; NC 20.10 19.10; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -7.1535 0.72001 STATS LOCAL VITERBI -7.4327 0.72001 STATS LOCAL FORWARD -4.4311 0.72001 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 1.55369 4.60977 4.14907 3.70927 3.25333 2.78594 4.56683 3.02606 3.86734 2.50972 3.90917 3.96129 1.93588 3.94731 3.20135 3.09390 3.22879 2.58048 2.79341 4.45678 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01565 4.56083 5.28317 0.61958 0.77255 0.00000 * 1 1.14469 4.45676 4.01265 3.63570 4.63893 3.27037 4.61629 4.03522 3.62264 3.73596 4.55147 3.71146 4.02543 3.89553 3.92532 1.68887 1.71173 3.47742 5.98913 4.79861 1 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01565 4.56083 5.28317 0.61958 0.77255 0.48576 0.95510 2 1.57114 4.46645 3.98635 3.72477 4.89618 1.16930 4.76039 4.35478 3.80540 4.02009 4.80269 3.74581 4.02760 4.04119 4.09150 1.64788 3.04223 3.65781 6.21593 5.04437 2 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01565 4.56083 5.28317 0.61958 0.77255 0.48576 0.95510 3 3.41493 4.82719 5.05297 4.78315 4.17493 4.41599 5.50826 2.27672 4.67160 2.76734 4.07392 4.85742 4.97278 5.00240 4.81598 4.00261 3.77998 0.44632 6.05528 4.81688 3 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01565 4.56083 5.28317 0.61958 0.77255 0.48576 0.95510 4 0.35849 4.70131 4.33215 4.21802 4.90846 3.49831 5.12957 4.15807 4.25761 3.99868 4.98509 4.14023 4.30323 4.53337 4.41622 3.06341 3.38990 3.67281 6.24859 5.15849 4 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01565 4.56083 5.28317 0.61958 0.77255 0.48576 0.95510 5 0.75712 4.44747 4.17349 3.89396 4.67390 3.28851 4.80495 3.88845 3.86753 3.73230 4.60849 3.84582 4.07648 4.13507 4.09921 2.75985 1.73930 3.38537 6.07457 4.91216 5 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01565 4.56083 5.28317 0.61958 0.77255 0.48576 0.95510 6 4.68925 5.77036 5.25938 5.16307 3.69260 4.61629 4.98919 4.82635 4.92846 4.07830 5.41232 5.20853 5.19371 5.27073 4.91631 4.88925 5.03444 4.72674 0.19042 3.66833 6 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01565 4.56083 5.28317 0.61958 0.77255 0.48576 0.95510 7 4.03527 5.32072 5.29854 4.98888 3.56194 4.85593 5.44612 2.83870 4.76311 0.33644 3.45036 5.20964 5.20385 4.95073 4.80662 4.59375 4.31236 3.04422 5.63199 4.50000 7 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01565 4.56083 5.28317 0.61958 0.77255 0.48576 0.95510 8 3.90841 5.49171 4.58867 4.55396 5.41447 4.14391 5.52085 5.20809 4.68349 4.72241 5.83198 4.77391 0.17636 5.04348 4.80183 4.10724 4.40598 4.76009 6.34881 5.55852 8 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01565 4.56083 5.28317 0.61958 0.77255 0.48576 0.95510 9 4.28181 5.48772 5.20855 5.09151 0.33151 4.70942 4.38454 3.78837 5.00019 3.01281 4.43337 4.87744 5.18249 4.98691 4.94777 4.48104 4.59792 3.82131 4.51067 2.82566 9 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01565 4.56083 5.28317 0.61958 0.77255 0.48576 0.95510 10 0.35849 4.70131 4.33215 4.21802 4.90846 3.49831 5.12957 4.15807 4.25761 3.99868 4.98509 4.14023 4.30323 4.53337 4.41622 3.06341 3.38990 3.67281 6.24859 5.15849 10 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01565 4.56083 5.28317 0.61958 0.77255 0.48576 0.95510 11 3.98153 5.66342 4.55505 3.98003 5.20988 4.26233 4.58269 4.85390 2.85040 4.24125 5.26309 4.26584 4.76854 3.80569 0.30428 4.06025 4.22407 4.55545 6.03111 5.03936 11 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01565 4.56083 5.28317 0.61958 0.77255 0.48576 0.95510 12 0.35849 4.70131 4.33215 4.21802 4.90846 3.49831 5.12957 4.15807 4.25761 3.99868 4.98509 4.14023 4.30323 4.53337 4.41622 3.06341 3.38990 3.67281 6.24859 5.15849 12 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01565 4.56083 5.28317 0.61958 0.77255 0.48576 0.95510 13 0.35849 4.70131 4.33215 4.21802 4.90846 3.49831 5.12957 4.15807 4.25761 3.99868 4.98509 4.14023 4.30323 4.53337 4.41622 3.06341 3.38990 3.67281 6.24859 5.15849 13 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01565 4.56083 5.28317 0.61958 0.77255 0.48576 0.95510 14 0.35849 4.70131 4.33215 4.21802 4.90846 3.49831 5.12957 4.15807 4.25761 3.99868 4.98509 4.14023 4.30323 4.53337 4.41622 3.06341 3.38990 3.67281 6.24859 5.15849 14 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01565 4.56083 5.28317 0.61958 0.77255 0.48576 0.95510 15 3.51015 4.72822 5.52506 5.06924 4.02614 5.06496 5.81512 0.77245 4.99373 2.44219 3.76999 5.23428 5.31251 5.24737 5.16156 4.50483 3.77719 1.27076 6.14485 4.93182 15 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01565 4.56083 5.28317 0.61958 0.77255 0.48576 0.95510 16 3.72869 5.38279 4.53286 4.53551 5.56655 0.17273 5.55467 5.38845 4.80288 4.92593 5.94331 4.70058 4.78527 5.07382 4.91257 3.92707 4.25753 4.78477 6.42800 5.70862 16 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01565 4.56083 5.28317 0.61958 0.77255 0.48576 0.95510 17 4.68925 5.77036 5.25938 5.16307 3.69260 4.61629 4.98919 4.82635 4.92846 4.07830 5.41232 5.20853 5.19371 5.27073 4.91631 4.88925 5.03444 4.72674 0.19042 3.66833 17 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01565 4.56083 5.28317 0.61958 0.77255 0.48576 0.95510 18 2.04406 4.39820 4.64890 4.07021 3.40091 4.17692 4.53534 2.37231 3.93176 1.62580 2.08052 4.23164 4.51466 4.11633 4.06389 3.49126 3.23572 1.69769 5.09123 3.93045 18 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01565 4.56083 5.28317 0.61958 0.77255 0.48576 0.95510 19 3.90841 5.49171 4.58867 4.55396 5.41447 4.14391 5.52085 5.20809 4.68349 4.72241 5.83198 4.77391 0.17636 5.04348 4.80183 4.10724 4.40598 4.76009 6.34881 5.55852 19 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01565 4.56083 5.28317 0.61958 0.77255 0.48576 0.95510 20 3.49629 4.71905 5.50042 4.99206 3.80967 5.01399 5.57908 1.43537 4.89952 1.57477 3.57263 5.14907 5.22090 5.06406 5.01234 4.41449 3.74382 1.00759 5.87462 4.72747 20 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01565 4.56083 5.28317 0.61958 0.77255 0.48576 0.95510 21 0.35849 4.70131 4.33215 4.21802 4.90846 3.49831 5.12957 4.15807 4.25761 3.99868 4.98509 4.14023 4.30323 4.53337 4.41622 3.06341 3.38990 3.67281 6.24859 5.15849 21 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01565 4.56083 5.28317 0.61958 0.77255 0.48576 0.95510 22 2.77062 5.11450 2.98320 2.52177 4.50821 3.50316 3.79736 3.96372 2.56148 3.49900 4.27724 2.11613 3.95186 2.11065 3.02991 2.05105 2.17746 3.56063 5.67270 4.29803 22 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01565 4.56083 5.28317 0.61958 0.77255 0.48576 0.95510 23 2.74323 2.50906 3.54182 2.98175 3.67304 3.68037 2.50049 3.04596 2.88367 2.75317 3.64432 3.39999 4.07587 2.26202 3.23630 2.93493 2.98200 2.09141 5.09887 3.84509 23 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01565 4.56083 5.28317 0.61958 0.77255 0.48576 0.95510 24 3.25587 5.47745 2.84041 1.67946 4.99412 3.64283 4.25498 4.48984 3.15583 4.04188 4.92552 3.28152 0.92705 3.44514 3.60805 3.23488 3.58089 4.08373 6.14750 4.81528 24 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01565 4.56083 5.28317 0.61958 0.77255 0.48576 0.95510 25 3.91770 5.15874 5.63747 5.07735 3.28231 5.22520 5.48967 2.52112 4.88388 0.62367 1.79251 5.32959 5.26636 4.84515 4.88813 4.62854 4.12294 2.79569 5.52339 4.54480 25 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01565 4.56083 5.28317 0.61958 0.77255 0.48576 0.95510 26 3.90841 5.49171 4.58867 4.55396 5.41447 4.14391 5.52085 5.20809 4.68349 4.72241 5.83198 4.77391 0.17636 5.04348 4.80183 4.10724 4.40598 4.76009 6.34881 5.55852 26 - - 2.68623 4.42230 2.77524 2.73128 3.46359 2.40517 3.72499 3.29359 2.67746 2.69360 4.24694 2.90351 2.73744 3.18151 2.89805 2.37892 2.77524 2.98426 4.58482 3.61508 0.77048 1.63225 1.07376 0.18703 1.76856 0.48576 0.95510 27 1.31802 4.31876 3.47475 3.18323 4.31833 3.10067 4.27071 3.64955 3.22673 3.38325 4.26089 3.39057 1.72768 3.54049 3.54403 2.56066 2.85367 3.18593 5.67317 4.45634 28 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.02369 4.15038 4.87273 0.61958 0.77255 0.27275 1.43249 28 3.90841 5.49171 4.58867 4.55396 5.41447 4.14391 5.52085 5.20809 4.68349 4.72241 5.83198 4.77391 0.17636 5.04348 4.80183 4.10724 4.40598 4.76009 6.34881 5.55852 29 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01056 4.55574 * 0.61958 0.77255 0.00000 * //