HMMER3/b [3.0 | March 2010] NAME RRN7 ACC PF11781.3 DESC RNA polymerase I-specific transcription initiation factor Rrn7 LENG 36 ALPH amino RF no CS no MAP yes DATE Sun Oct 7 04:16:08 2012 NSEQ 25 EFFN 18.020630 CKSUM 3132998488 GA 23.30 23.30; TC 23.30 23.30; NC 23.20 23.20; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -7.4192 0.71963 STATS LOCAL VITERBI -8.0169 0.71963 STATS LOCAL FORWARD -4.4498 0.71963 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.76858 2.27065 2.95708 2.46335 3.13497 2.40158 3.63282 3.34454 3.11120 3.24152 3.95519 3.37088 3.79728 2.96178 2.67875 2.90927 2.91747 2.89528 4.30676 3.12883 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00219 6.51954 7.24189 0.61958 0.77255 0.00000 * 1 2.66320 5.97562 4.24020 2.58431 5.20294 3.09926 3.09726 4.61345 3.67355 2.76740 1.28683 4.19656 5.04422 2.52990 4.13239 1.82357 3.08832 3.31440 6.48622 5.16018 1 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.19355 6.51954 1.74582 0.61958 0.77255 0.48576 0.95510 2 3.64357 6.14153 3.89662 1.26995 5.48140 4.41898 3.00586 4.96359 2.30357 2.45938 5.18361 2.44239 4.81242 2.92634 3.83443 2.94631 2.26124 2.62112 6.57722 5.16961 2 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.05495 6.32864 2.96269 0.61958 0.77255 1.66119 0.21061 3 3.68125 5.39502 2.61781 2.65472 2.48210 2.56242 2.76216 2.95480 3.95588 3.60575 4.49857 4.40499 5.04279 4.25612 4.30686 2.76083 2.87956 2.43367 1.88505 2.42627 3 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00280 6.27649 6.99884 0.61958 0.77255 0.96599 0.47901 4 1.77477 5.33742 4.92699 2.25810 2.52310 3.25633 5.08808 2.14401 4.27367 3.53870 2.53318 4.66822 5.18270 4.53828 2.90247 2.58098 2.06128 2.91236 5.93755 4.72915 4 - - 2.68629 4.42236 2.77530 2.73134 3.46365 2.40523 3.72505 3.29365 2.67751 2.69366 4.24700 2.90357 2.73750 3.18157 2.89811 2.37897 2.77357 2.98529 4.58488 3.61514 0.07273 2.66919 7.07719 0.10230 2.33060 0.60433 0.79063 5 1.92506 6.24702 3.98279 1.87609 5.59452 2.75471 4.69265 5.08031 1.98408 4.55231 5.28772 3.97465 4.90089 2.93533 1.51697 2.50299 3.03843 4.63911 6.67746 5.26766 6 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00237 6.44243 7.16478 0.61958 0.77255 1.15684 0.37757 6 3.04165 6.24207 3.10845 1.65820 5.58578 1.07313 4.69438 5.07093 2.71080 3.19190 5.28336 2.89671 4.90022 3.79145 2.70526 3.69653 3.96540 3.24117 6.67530 5.26487 7 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00237 6.44243 7.16478 0.61958 0.77255 1.15684 0.37757 7 3.77491 5.79487 2.38751 2.02284 2.54747 4.64993 4.86887 3.04753 2.49601 4.03221 4.87965 4.23588 1.56642 4.06745 4.16678 3.86617 4.00648 2.14210 6.33008 2.46597 8 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.06643 6.44243 2.76976 0.61958 0.77255 1.15684 0.37757 8 2.46601 6.19026 2.60358 2.48175 5.53617 4.45113 4.63810 3.00898 2.37231 4.49590 5.23070 1.78427 2.67964 2.82102 2.65967 2.91556 2.79663 2.48856 6.62245 5.21099 9 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.42866 6.37853 1.05866 0.61958 0.77255 0.93198 0.50050 9 3.51585 5.07288 2.05940 1.85798 2.31383 4.57302 4.85651 1.74546 4.06665 2.50921 2.81333 4.45167 4.94584 4.32478 2.76115 3.84272 3.74777 2.58523 5.67611 4.47112 10 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00364 6.01288 6.73523 0.61958 0.77255 1.69361 0.20316 10 1.44744 2.95947 4.36254 3.79497 4.43226 4.49996 2.98521 2.24092 3.74371 2.65323 4.39103 4.21415 2.51214 2.34795 2.18743 3.74108 3.76672 3.56641 5.86615 4.62612 11 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00342 6.07655 6.79890 0.61958 0.77255 0.07103 2.68001 11 7.17362 0.00740 7.82864 7.91660 8.31929 6.77714 8.40330 8.61154 8.06220 7.80150 9.07937 8.06353 7.45203 8.34648 7.81834 7.48632 7.67332 8.10919 8.74009 8.55046 12 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00219 6.51954 7.24189 0.61958 0.77255 0.48576 0.95510 12 1.80461 6.42691 2.57305 2.13929 5.77985 1.56261 4.86309 5.27063 3.62009 4.74283 5.48354 2.95557 2.42661 3.96450 4.12098 2.12964 2.70626 4.82564 6.87042 5.45058 13 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00219 6.51954 7.24189 0.61958 0.77255 0.48576 0.95510 13 2.87338 5.88780 4.35214 2.39240 5.09093 4.71807 4.94222 2.89876 3.79564 4.12896 4.97616 2.67588 5.10946 1.59493 4.23543 3.93765 2.47783 1.16985 6.42896 5.12987 14 - - 2.68736 4.42343 2.76977 2.73102 3.46472 2.40410 3.72612 3.29472 2.67859 2.69473 4.24808 2.89753 2.73857 3.18264 2.89762 2.38005 2.77637 2.98636 4.58595 3.61621 0.37874 1.15658 7.24189 0.69133 0.69497 0.48576 0.95510 14 7.17362 0.00740 7.82864 7.91660 8.31929 6.77714 8.40330 8.61154 8.06220 7.80150 9.07937 8.06353 7.45203 8.34648 7.81834 7.48632 7.67332 8.10919 8.74009 8.55046 17 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00219 6.51954 7.24189 0.61958 0.77255 0.48576 0.95510 15 2.41897 6.31568 4.05006 2.41217 5.66434 1.84007 4.75979 5.14931 2.72019 4.62059 5.35684 4.04278 2.98268 2.58861 1.29378 2.35567 4.03594 4.70856 6.74480 5.33649 18 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00219 6.51954 7.24189 0.61958 0.77255 0.48576 0.95510 16 1.42273 6.29994 4.03509 1.88349 5.64479 2.61060 4.75190 5.13016 3.48699 3.28856 5.34167 2.52274 4.95784 3.04055 2.62435 1.70163 4.02280 4.69068 6.73343 5.32297 19 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00219 6.51954 7.24189 0.61958 0.77255 0.48576 0.95510 17 3.84160 5.76505 2.71840 3.89948 4.93752 3.30398 4.97444 3.23519 3.87667 2.52644 4.85625 3.22235 5.13182 3.36482 1.46174 3.96979 2.05796 2.01727 6.31727 2.33331 20 - - 2.68343 4.42379 2.77296 2.73278 3.46508 2.40413 3.72649 3.29508 2.67703 2.69509 4.24844 2.90278 2.73894 3.18301 2.89955 2.37728 2.77674 2.98196 4.58631 3.61657 0.60887 0.78676 7.24189 0.59135 0.80649 0.48576 0.95510 18 3.86559 5.63163 3.27822 3.12437 1.77036 4.82621 5.07182 4.14085 2.47333 1.89696 4.73227 4.53267 5.20681 4.37751 2.37421 4.06541 3.06869 2.57807 1.70493 4.96406 25 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00219 6.51954 7.24189 0.61958 0.77255 0.48576 0.95510 19 2.37503 5.80011 2.57333 2.64791 1.63627 2.07927 4.98608 4.35773 3.89144 4.02941 4.89217 4.37744 5.14767 4.21899 4.31202 3.98649 2.62807 4.09722 2.70506 1.89015 26 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00219 6.51954 7.24189 0.61958 0.77255 0.48576 0.95510 20 3.79362 6.17760 3.01841 2.82279 3.23440 4.58849 4.78155 2.81282 2.48918 2.30982 5.23154 4.07822 2.29803 2.56495 1.95098 2.86149 3.11353 3.32705 6.64094 2.45068 27 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00219 6.51954 7.24189 0.61958 0.77255 0.48576 0.95510 21 3.81953 5.94196 4.27170 2.18405 5.15932 3.16898 4.87851 2.42004 2.80774 2.43642 5.01904 4.22194 5.05780 4.04734 2.65433 1.37127 2.26119 2.57855 6.45969 5.14259 28 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00219 6.51954 7.24189 0.61958 0.77255 0.48576 0.95510 22 3.10287 6.32522 1.12386 1.73826 5.67049 3.15461 4.76744 3.07253 3.50616 4.63061 5.36649 2.43740 4.97173 3.20029 2.58938 2.74096 4.04172 4.71609 6.75715 5.34375 29 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00219 6.51954 7.24189 0.61958 0.77255 0.48576 0.95510 23 1.64944 8.11705 0.89081 1.34337 7.35179 3.33185 5.91526 6.99136 5.19276 6.39307 7.34963 2.74881 5.92573 5.11068 6.00079 5.01961 5.57201 6.47421 8.54327 6.84192 30 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00219 6.51954 7.24189 0.61958 0.77255 0.48576 0.95510 24 7.14921 8.15172 7.71244 7.80275 8.40760 0.00665 8.39078 8.72046 8.02398 7.86249 9.12068 7.98958 7.44052 8.29198 7.80658 7.44783 7.64961 8.16422 8.76176 8.64953 31 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00219 6.51954 7.24189 0.61958 0.77255 0.48576 0.95510 25 3.91602 5.81122 4.57027 3.99514 1.34629 3.48170 5.02607 4.36022 2.27694 2.06183 4.90385 4.45333 5.20091 2.56327 2.02427 4.05251 2.62986 4.10710 6.35264 2.70555 32 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00219 6.51954 7.24189 0.61958 0.77255 0.48576 0.95510 26 4.19568 5.67150 5.57539 4.99724 2.05393 5.25872 3.37370 4.13476 2.21644 2.57864 4.78970 5.18215 5.62133 5.06646 2.95964 4.54929 2.09641 3.94243 2.96352 1.13267 33 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00219 6.51954 7.24189 0.61958 0.77255 0.48576 0.95510 27 4.56289 5.87053 6.50156 5.96093 1.60364 5.77945 5.84659 2.01441 5.76664 3.89111 4.96856 5.88277 6.10822 5.85888 5.76751 5.11615 2.89933 1.85194 6.15944 0.96621 34 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00219 6.51954 7.24189 0.61958 0.77255 0.48576 0.95510 28 7.17362 0.00740 7.82864 7.91660 8.31929 6.77714 8.40330 8.61154 8.06220 7.80150 9.07937 8.06353 7.45203 8.34648 7.81834 7.48632 7.67332 8.10919 8.74009 8.55046 35 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.37874 6.51954 1.15900 0.61958 0.77255 0.48576 0.95510 29 2.36191 5.91888 2.69772 3.25581 5.22098 4.30935 4.50148 3.08251 2.63438 4.20563 3.21044 2.37073 4.70169 2.70364 2.46970 3.50223 1.85449 1.92985 6.37816 4.99477 36 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00319 6.14400 6.86634 0.61958 0.77255 0.07950 2.57144 30 3.97819 6.46161 4.20451 1.95710 5.83022 4.72215 2.75042 5.29877 3.52779 4.75621 5.50660 4.19021 5.11588 1.95602 1.06006 2.15747 2.76064 4.86719 6.86230 5.48376 37 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00219 6.51954 7.24189 0.61958 0.77255 0.48576 0.95510 31 6.31915 0.47171 7.29085 7.17390 3.06437 6.80260 5.56757 6.06762 6.58091 5.22189 6.58183 6.42738 7.11108 6.54996 1.90823 6.23743 6.55174 5.99584 5.65576 1.90287 38 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00219 6.51954 7.24189 0.61958 0.77255 0.48576 0.95510 32 5.03178 7.12668 4.70223 4.78803 6.99088 0.36354 1.72622 7.09305 5.64662 6.55513 7.47575 2.60440 6.14467 5.74404 6.11179 5.07469 5.52813 6.34104 8.27219 6.83452 39 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00219 6.51954 7.24189 0.61958 0.77255 0.48576 0.95510 33 2.86960 5.67869 4.83656 4.28532 2.72786 4.86023 1.33503 4.25709 4.24573 3.96654 4.85361 2.23377 5.29193 4.54737 4.60161 2.60459 1.34196 2.98260 6.32592 5.08864 40 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00219 6.51954 7.24189 0.61958 0.77255 0.48576 0.95510 34 2.86743 5.67889 4.70136 2.90615 4.83345 4.86419 5.10467 2.31317 2.27803 2.87477 4.78083 4.56197 5.24377 1.29025 4.43288 4.10509 4.13788 1.40973 6.26346 5.01936 41 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00219 6.51954 7.24189 0.61958 0.77255 0.48576 0.95510 35 2.01140 5.45129 5.11238 4.53484 3.06650 4.95311 5.23684 2.31336 2.64256 2.90507 2.33919 4.83424 5.32635 1.88430 3.41477 1.95924 2.81813 2.87469 6.05371 4.84874 42 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00219 6.51954 7.24189 0.61958 0.77255 0.48576 0.95510 36 2.83695 6.38079 1.91813 0.99542 5.71752 4.61578 3.12450 5.20237 3.58079 3.29025 5.42603 4.08306 5.02669 1.79786 4.07805 3.83436 4.10894 3.18312 6.81617 5.40226 43 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00148 6.51883 * 0.61958 0.77255 0.00000 * //