HMMER3/b [3.0 | March 2010] NAME HSV_VP16_C ACC PF12149.3 DESC Herpes simplex virus virion protein 16 C terminal LENG 30 ALPH amino RF no CS no MAP yes DATE Thu Oct 4 04:27:12 2012 NSEQ 2 EFFN 1.511719 CKSUM 1683879150 GA 20.10 20.10; TC 20.60 61.80; NC 17.70 18.90; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -7.0504 0.71985 STATS LOCAL VITERBI -7.3757 0.71985 STATS LOCAL FORWARD -4.2674 0.71985 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.25124 5.05655 1.91894 2.57517 2.30903 2.22615 4.58593 3.14680 3.85602 2.56584 3.36202 3.84209 3.58801 3.32803 4.16653 3.21439 3.12672 3.09231 5.43833 3.26892 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.00000 * 1 3.71538 5.81794 0.36366 2.87462 5.29912 3.74978 4.57504 5.04231 3.78446 4.55528 5.58000 3.44771 4.44147 3.83783 4.35130 3.63643 4.07598 4.63016 6.33852 5.12312 1 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 2 3.17772 5.50803 1.20026 2.53436 5.01293 3.50174 4.15864 4.56368 3.19036 4.09387 4.96454 3.09603 1.42056 3.34614 3.75094 3.12308 3.51122 4.11724 6.18267 4.77748 2 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 3 1.34943 4.41762 4.38409 3.99214 4.01200 3.66509 4.77026 2.49085 3.90932 2.81481 3.91029 4.05251 4.31232 4.18404 4.12568 3.10070 3.16600 1.21017 5.65947 4.45657 3 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 4 1.14981 4.46882 3.78525 3.52925 4.62152 3.24880 4.58622 3.97856 3.58181 3.70647 4.57059 3.65321 1.36227 3.87487 3.87053 2.72669 3.03979 3.45237 5.96794 4.77871 4 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 5 4.15643 5.41238 4.72009 4.58298 2.54641 4.52553 4.03152 4.10523 4.43127 3.40495 4.72205 4.48459 4.99873 4.58885 4.48391 4.22210 4.45260 4.00509 4.20081 0.37935 5 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 6 1.09392 4.41804 3.88501 3.69760 4.79620 1.22688 4.73997 4.20448 3.81453 3.92406 4.74484 3.71378 3.98892 4.05183 4.06941 2.68190 3.02122 3.56167 6.12383 4.97134 6 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 7 1.12935 4.37960 3.91000 3.64523 4.69393 3.16490 4.65162 4.09655 3.68604 3.81434 4.63183 3.66928 3.95372 3.94723 3.95752 1.17741 2.96466 3.48084 6.04257 4.85878 7 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 8 3.85937 5.17391 5.09702 4.77316 3.45957 4.69560 5.26166 2.72120 4.54214 0.40074 3.36406 5.00014 5.05544 4.76592 4.61175 4.39116 4.13845 2.89794 5.50348 4.34640 8 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 9 3.71538 5.81794 0.36366 2.87462 5.29912 3.74978 4.57504 5.04231 3.78446 4.55528 5.58000 3.44771 4.44147 3.83783 4.35130 3.63643 4.07598 4.63016 6.33852 5.12312 9 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 10 3.25011 4.61074 4.94161 4.42164 3.52378 4.47991 4.98518 2.14941 4.26050 2.03095 1.55966 4.59790 4.80882 4.47355 4.40230 3.85509 3.51344 1.19863 5.44972 4.29603 10 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 11 0.43689 4.58352 4.14785 4.00943 4.72634 3.38616 4.94642 3.94827 4.04392 3.79867 4.79157 3.98070 4.18028 4.33341 4.22557 2.94192 3.25987 3.49319 6.08719 4.97088 11 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 12 3.71538 5.81794 0.36366 2.87462 5.29912 3.74978 4.57504 5.04231 3.78446 4.55528 5.58000 3.44771 4.44147 3.83783 4.35130 3.63643 4.07598 4.63016 6.33852 5.12312 12 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 13 4.07634 5.31820 5.02870 4.87868 0.40690 4.56407 4.26418 3.57458 4.78368 2.82445 4.23451 4.70997 5.03157 4.80146 4.76196 4.29280 4.38849 3.60132 4.40321 2.72345 13 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 14 3.59099 5.70425 2.90143 0.43118 5.14625 3.75313 4.43988 4.72982 3.40823 4.26581 5.25631 3.43137 4.39575 3.66943 3.84966 3.53554 3.91247 4.36772 6.19992 4.98007 14 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 15 4.07634 5.31820 5.02870 4.87868 0.40690 4.56407 4.26418 3.57458 4.78368 2.82445 4.23451 4.70997 5.03157 4.80146 4.76196 4.29280 4.38849 3.60132 4.40321 2.72345 15 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 16 3.59099 5.70425 2.90143 0.43118 5.14625 3.75313 4.43988 4.72982 3.40823 4.26581 5.25631 3.43137 4.39575 3.66943 3.84966 3.53554 3.91247 4.36772 6.19992 4.98007 16 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 17 3.50283 5.41944 3.44568 3.24942 4.66722 3.85997 4.39729 4.43310 3.03795 3.87037 4.92031 3.69990 4.44477 0.49320 3.29341 3.54456 3.81757 4.13600 5.84402 4.60182 17 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 18 3.53260 5.00750 4.72936 4.40398 3.60929 4.30540 5.00896 2.85089 4.13656 2.14649 0.59931 4.60083 4.79879 4.49441 4.26735 3.92276 3.86521 2.91753 5.49992 4.30131 18 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 19 4.07634 5.31820 5.02870 4.87868 0.40690 4.56407 4.26418 3.57458 4.78368 2.82445 4.23451 4.70997 5.03157 4.80146 4.76196 4.29280 4.38849 3.60132 4.40321 2.72345 19 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 20 2.83957 4.67419 4.06851 3.89373 4.60803 3.48408 4.84933 3.81702 3.85000 3.65657 4.69461 3.97299 4.24298 4.21963 4.05316 3.05024 0.48961 3.43941 5.98341 4.83475 20 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 21 3.71538 5.81794 0.36366 2.87462 5.29912 3.74978 4.57504 5.04231 3.78446 4.55528 5.58000 3.44771 4.44147 3.83783 4.35130 3.63643 4.07598 4.63016 6.33852 5.12312 21 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 22 0.43689 4.58352 4.14785 4.00943 4.72634 3.38616 4.94642 3.94827 4.04392 3.79867 4.79157 3.98070 4.18028 4.33341 4.22557 2.94192 3.25987 3.49319 6.08719 4.97088 22 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 23 3.85937 5.17391 5.09702 4.77316 3.45957 4.69560 5.26166 2.72120 4.54214 0.40074 3.36406 5.00014 5.05544 4.76592 4.61175 4.39116 4.13845 2.89794 5.50348 4.34640 23 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 24 3.51246 5.19502 4.29612 4.28034 5.34286 0.22313 5.32649 5.11767 4.53453 4.68196 5.68749 4.46343 4.59802 4.81500 4.67332 3.70549 4.03455 4.53672 6.25229 5.47588 24 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 25 3.50968 4.81716 5.07864 4.74392 3.82749 4.63820 5.40532 0.56681 4.58842 2.33129 3.70935 4.91972 5.04714 4.89931 4.72737 4.22186 3.81064 2.02594 5.80979 4.57835 25 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 26 3.71538 5.81794 0.36366 2.87462 5.29912 3.74978 4.57504 5.04231 3.78446 4.55528 5.58000 3.44771 4.44147 3.83783 4.35130 3.63643 4.07598 4.63016 6.33852 5.12312 26 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 27 3.29251 5.97505 1.18724 1.18837 5.25189 3.45441 4.05813 4.81688 3.15395 4.27561 5.15033 2.90447 4.11345 3.23195 3.80859 3.13867 3.59476 4.35528 6.41072 4.84898 27 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 28 4.07634 5.31820 5.02870 4.87868 0.40690 4.56407 4.26418 3.57458 4.78368 2.82445 4.23451 4.70997 5.03157 4.80146 4.76196 4.29280 4.38849 3.60132 4.40321 2.72345 28 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 29 3.51246 5.19502 4.29612 4.28034 5.34286 0.22313 5.32649 5.11767 4.53453 4.68196 5.68749 4.46343 4.59802 4.81500 4.67332 3.70549 4.03455 4.53672 6.25229 5.47588 29 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01775 4.43582 5.15817 0.61958 0.77255 0.48576 0.95510 30 3.51246 5.19502 4.29612 4.28034 5.34286 0.22313 5.32649 5.11767 4.53453 4.68196 5.68749 4.46343 4.59802 4.81500 4.67332 3.70549 4.03455 4.53672 6.25229 5.47588 30 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.01199 4.43005 * 0.61958 0.77255 0.00000 * //