HMMER3/b [3.0 | March 2010] NAME Msg2_C ACC PF12373.3 DESC Major surface glycoprotein 2 C terminal LENG 30 ALPH amino RF no CS no MAP yes DATE Thu Oct 4 18:18:20 2012 NSEQ 17 EFFN 8.852783 CKSUM 1120424792 GA 25.00 25.00; TC 29.60 28.60; NC 21.50 20.00; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -6.9436 0.71989 STATS LOCAL VITERBI -7.1697 0.71989 STATS LOCAL FORWARD -4.7332 0.71989 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.08665 5.76210 3.17901 2.22360 2.73606 3.37755 4.56642 3.19692 2.46805 2.33661 4.59673 3.66231 4.22384 3.59426 2.61948 2.98560 2.81927 2.18460 6.38242 4.12473 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00427 5.85361 6.57595 0.61958 0.77255 0.00000 * 1 3.32412 5.81000 3.58200 3.02624 5.14538 3.00352 2.33166 4.62399 1.63620 2.18063 4.85339 2.66236 3.35022 2.07706 3.51483 2.75733 3.55513 4.19548 6.24810 3.27394 1 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00427 5.85361 6.57595 0.61958 0.77255 0.48576 0.95510 2 2.75619 5.01794 5.60518 5.00661 0.99034 4.83131 5.19148 3.22314 4.80503 1.84891 4.02788 5.00386 3.29852 4.92731 4.82033 4.15496 3.88894 1.60319 5.65472 4.47579 2 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00427 5.85361 6.57595 0.61958 0.77255 0.48576 0.95510 3 4.46044 6.52354 5.09666 4.22172 6.11887 1.58889 4.84494 2.79724 0.70190 4.75194 5.63252 4.55781 5.36487 3.97081 2.15300 4.44546 4.58461 5.06846 6.73080 5.64196 3 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00427 5.85361 6.57595 0.61958 0.77255 0.48576 0.95510 4 5.35742 6.43544 7.36029 6.81498 4.33341 6.95057 7.20627 1.83477 6.73121 0.27264 4.03498 7.19404 6.65884 6.30962 6.53932 6.49306 5.53627 3.78381 6.77668 5.95148 4 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00427 5.85361 6.57595 0.61958 0.77255 0.48576 0.95510 5 4.64931 5.79066 6.83683 6.41110 5.02515 6.44090 7.35739 2.23999 6.41792 1.82575 4.69851 6.62108 6.54309 6.61739 6.58596 5.93951 4.90719 0.38646 7.38842 6.23265 5 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00427 5.85361 6.57595 0.61958 0.77255 0.48576 0.95510 6 5.04822 6.89287 6.15626 4.75260 6.71259 5.42088 5.00231 5.83631 1.11675 5.05745 5.99692 4.93396 5.68705 4.12827 0.53928 5.00395 5.04890 5.57239 6.91168 5.96960 6 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00427 5.85361 6.57595 0.61958 0.77255 0.48576 0.95510 7 6.32112 7.43719 6.80358 6.39088 7.34532 6.01865 6.80664 7.37614 5.19269 6.55322 7.68677 6.61759 6.59591 6.17797 0.02745 6.48769 6.59563 7.03058 7.81188 7.26796 7 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00427 5.85361 6.57595 0.61958 0.77255 0.48576 0.95510 8 1.65503 5.86103 3.64209 1.96561 5.31105 2.52889 4.44953 4.79583 3.21068 4.28453 5.02948 1.93774 4.60307 3.55600 3.70408 1.74181 2.64785 4.34110 6.42057 5.01591 8 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.26228 5.85361 1.47912 0.61958 0.77255 0.48576 0.95510 9 3.45522 4.80839 5.41195 4.81635 2.50446 4.65289 4.94962 1.46241 4.61336 2.90814 3.90774 4.80236 5.00331 4.74241 4.62863 3.97239 2.71770 1.90984 5.39918 1.33861 9 - - 2.68692 4.42300 2.77594 2.73198 3.46428 2.40587 3.72569 3.29428 2.67815 2.69429 4.24764 2.90149 2.73584 3.18221 2.89875 2.37961 2.77116 2.98298 4.58551 3.61578 0.22910 1.59479 6.31919 1.54849 0.23898 0.16718 1.87112 10 2.04661 5.63408 3.77112 1.79543 4.91998 4.21726 4.44812 4.29105 1.98406 3.92317 4.73646 3.76011 4.62593 3.59277 3.67356 3.44383 2.85174 1.27699 6.16256 4.82433 15 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00427 5.85361 6.57595 0.61958 0.77255 0.48576 0.95510 11 1.63974 6.00923 2.11743 2.56285 5.34990 4.17526 4.41748 4.84295 1.29333 4.31316 5.05770 2.46725 4.60681 3.52156 3.69038 2.55449 3.71564 4.39882 6.44081 5.01516 16 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00427 5.85361 6.57595 0.61958 0.77255 0.48576 0.95510 12 3.49102 5.17203 4.42245 2.11694 4.37105 1.84521 4.82681 3.58078 3.90109 2.70212 4.33690 4.28949 4.88220 4.19017 4.22938 3.74825 2.00327 1.19611 5.84281 4.61720 17 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00427 5.85361 6.57595 0.61958 0.77255 0.48576 0.95510 13 3.32983 5.77139 3.59928 2.09654 5.08810 1.85669 3.06305 4.55524 3.05071 2.57635 4.81985 3.59102 3.18988 1.94893 3.53804 2.68424 3.56116 4.14701 6.22078 2.25303 18 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00427 5.85361 6.57595 0.61958 0.77255 0.48576 0.95510 14 4.60572 5.74480 6.81213 6.40595 5.19529 6.43682 7.48383 1.88755 6.43278 2.58061 4.85148 6.61398 6.56610 6.72942 6.65680 5.94610 4.86984 0.32579 7.57731 6.33783 19 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00427 5.85361 6.57595 0.61958 0.77255 0.48576 0.95510 15 3.63446 5.55775 5.76692 5.71466 6.41388 4.34459 6.44100 5.93005 5.73344 5.61395 6.34792 5.19515 2.31748 5.84533 5.78384 1.36569 0.57610 4.98453 7.74307 6.71330 20 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00427 5.85361 6.57595 0.61958 0.77255 0.48576 0.95510 16 4.83723 7.25207 3.83450 0.25985 6.75031 4.88936 5.39074 6.28934 2.12828 5.63584 6.58688 4.39371 5.53294 4.57257 4.39819 4.68321 5.11100 5.86232 7.56877 6.26357 21 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00427 5.85361 6.57595 0.61958 0.77255 0.48576 0.95510 17 1.71663 5.77153 3.59935 2.55719 5.09133 4.10832 4.29778 4.55937 1.83228 2.56264 4.81918 3.58647 2.93996 3.40305 2.07085 2.68253 2.74634 3.27032 6.21962 4.82515 22 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00427 5.85361 6.57595 0.61958 0.77255 0.48576 0.95510 18 6.14425 7.56700 5.22385 0.03047 7.43610 5.76393 6.86297 7.55953 6.18119 6.80329 8.00580 5.86848 6.44765 6.28439 6.51182 6.12799 6.52621 7.12861 8.01057 7.39643 23 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00427 5.85361 6.57595 0.61958 0.77255 0.48576 0.95510 19 1.88480 5.07737 5.64056 5.05095 4.20736 4.95875 5.33083 2.40034 2.84601 1.14965 4.16616 5.09542 5.30090 5.02697 4.91600 4.28240 3.96518 1.37081 5.82762 4.65011 24 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00427 5.85361 6.57595 0.61958 0.77255 0.48576 0.95510 20 2.72023 5.97988 3.67927 1.99589 5.33074 4.24876 4.43949 3.04609 0.74847 4.27404 5.03770 2.86455 4.66067 3.54797 3.55407 3.49175 3.75668 4.37501 6.40180 5.02246 25 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00427 5.85361 6.57595 0.61958 0.77255 0.48576 0.95510 21 0.04840 6.27942 6.37519 6.43499 6.90014 5.03541 7.05513 6.55041 6.49767 6.19199 7.10481 5.98862 5.87195 6.63841 6.42147 4.70908 5.07326 5.73670 7.90692 7.18242 26 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00427 5.85361 6.57595 0.61958 0.77255 0.48576 0.95510 22 6.40565 7.25954 6.93915 7.00217 0.04124 6.19448 6.04447 6.26210 7.00536 5.30648 6.76616 6.68719 6.73239 6.88668 6.76885 6.48795 6.74198 6.27028 6.13788 4.46798 27 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00427 5.85361 6.57595 0.61958 0.77255 0.48576 0.95510 23 4.52996 7.12164 0.33658 3.49943 6.57511 4.58850 5.36517 6.13051 4.63980 5.68321 6.64403 2.25300 5.32456 4.57312 5.39883 4.38164 4.90281 2.74836 7.82761 6.19091 28 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00427 5.85361 6.57595 0.61958 0.77255 0.48576 0.95510 24 1.52630 6.08950 2.75594 2.17448 5.31470 4.45984 4.94996 4.69769 3.96528 0.81564 5.22926 4.00739 5.02347 4.15922 4.48175 3.95666 4.22266 4.41026 6.67294 5.31489 29 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00427 5.85361 6.57595 0.61958 0.77255 0.48576 0.95510 25 2.28415 5.49547 6.11564 5.91182 5.58077 4.58680 6.39659 3.88137 5.77325 4.39378 5.45162 5.39378 5.38315 5.90945 5.79146 4.07453 0.87676 0.96203 7.22960 6.09871 30 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00427 5.85361 6.57595 0.61958 0.77255 0.48576 0.95510 26 0.64638 5.46642 5.64584 5.33382 5.75474 4.34162 6.03365 5.15673 5.24047 4.87907 2.94546 5.05113 5.15344 5.43336 5.39581 1.38115 2.43328 4.56964 7.15898 6.03546 31 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00427 5.85361 6.57595 0.61958 0.77255 0.48576 0.95510 27 3.58045 5.94430 3.90334 1.97736 5.29305 4.33729 4.44879 1.60244 2.46320 3.23204 4.99750 3.82195 4.71644 1.45650 2.18868 3.56082 3.79426 4.33909 6.34112 5.01371 32 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00427 5.85361 6.57595 0.61958 0.77255 0.48576 0.95510 28 0.36136 5.50739 6.11522 5.99535 5.90054 4.44044 6.45488 4.53960 5.84683 4.83963 5.80367 5.32282 5.28625 5.94778 5.82913 3.93640 2.74879 1.88009 7.43443 6.35315 33 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00427 5.85361 6.57595 0.61958 0.77255 0.48576 0.95510 29 5.45152 6.51481 7.37807 6.81983 0.82899 6.96387 6.84154 3.61784 6.72203 0.83194 2.86003 7.10903 6.63781 6.23060 6.48248 6.46187 5.60695 4.08078 6.52368 5.45656 34 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00427 5.85361 6.57595 0.61958 0.77255 0.48576 0.95510 30 3.64639 6.18806 2.66564 1.25519 5.52658 2.11279 4.56838 5.02607 3.38479 4.49843 5.25789 2.76630 4.73252 3.68362 3.90816 1.47277 3.89408 2.96041 6.63225 5.18976 35 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00288 5.85221 * 0.61958 0.77255 0.00000 * //