# STOCKHOLM 1.0
#=GF ID   DUF3888
#=GF AC   PF13027.1
#=GF DE   Protein of unknown function (DUF3888)
#=GF AU   Mistry J, Aldam G
#=GF SE   Pfam-B_1080 (release 24.0)
#=GF GA   22.20 21.80;
#=GF TC   22.20 21.80;
#=GF NC   21.80 21.10;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF DR   INTERPRO; IPR024984;
#=GF CC   This family of proteins is functionally uncharacterised. This
#=GF CC   family of proteins is found in bacteria. Proteins in this family
#=GF CC   are typically between 111 and 149 amino acids in length.
#=GF SQ   23
#=GS C3BBH2_BACMY/10-96    AC C3BBH2.1
#=GS C3IWU5_BACTU/35-121   AC C3IWU5.1
#=GS C2U6W3_BACCE/35-121   AC C2U6W3.1
#=GS C2UKB6_BACCE/32-113   AC C2UKB6.1
#=GS C3FHM1_BACTB/11-98    AC C3FHM1.1
#=GS C3B0U8_BACMY/57-144   AC C3B0U8.1
#=GS A7GMV7_BACCN/31-119   AC A7GMV7.1
#=GS Q0SPX1_CLOPS/175-262  AC Q0SPX1.1
#=GS E6TVR7_BACCJ/33-124   AC E6TVR7.1
#=GS D9SVN9_CLOC7/42-122   AC D9SVN9.1
#=GS C5D8E7_GEOSW/48-135   AC C5D8E7.1
#=GS B1BCP4_CLOBO/34-120   AC B1BCP4.1
#=GS C5VNF8_CLOBO/34-119   AC C5VNF8.1
#=GS C2NKE7_BACCE/134-219  AC C2NKE7.1
#=GS C2XZE2_BACCE/138-219  AC C2XZE2.1
#=GS Q8ETK7_OCEIH/37-126   AC Q8ETK7.1
#=GS Q8ETH7_OCEIH/36-124   AC Q8ETH7.1
#=GS A9KJA0_CLOPH/16-107   AC A9KJA0.1
#=GS C5UQT1_CLOBO/48-136   AC C5UQT1.1
#=GS D3FXS4_BACPE/38-128   AC D3FXS4.1
#=GS D3E9A3_GEOS4/41-135   AC D3E9A3.1
#=GS B3ZXK4_BACCE/39-132   AC B3ZXK4.1
#=GS A3I9T0_9BACI/51-145   AC A3I9T0.1
C3BBH2_BACMY/10-96               NKDSYNTLLAPYASQVIRKQLGTY.......HQYSLTETKVIKVERYPK.GTFN..FLVTTEYHTYV....NAHNPPNYKVTITFNID....PSGVKVKKVKQQK
C3IWU5_BACTU/35-121              FYDSYNTLLAPYASEAIRSKLGPD.......YQYSLTDAKIIKIERSKK.YTFT..FIVVAKYKTYT....NAHNPPNHVVTITYNVS....PNGVKVIDFKQKK
C2U6W3_BACCE/35-121              FYDSYNTLLAPYASKAIRNKLGPN.......HQYSLTDAKILKVERFPK.ENFS..FIVTVQYKTYT....GAHNPPNGIETVTFNID....PSGVKVINFVHKD
C2UKB6_BACCE/32-113              LESALSNRYYSVIRRVTEDQY...............ECASVINIKRLGKKDEFVPRYEVKLQFLTFQ....GAHNPPNDKVTLTLEDH....LDHVKIKKVEREK
C3FHM1_BACTB/11-98               MEDALYSVLFPKINKAIEKQYGSL.......KPY..QCPKIISLKKVYS.GTYL..FQASIEVTKYER.VAGKIAPPFEKVTITFNNE....EGEWEVRKISVKR
C3B0U8_BACMY/57-144              LEDALYSVLFPQINVAIEKHYGKQ.......KPY..ECPKIVSLKKMYS.GTYL..FQAVIEVTKYEA.IGGKVLPPFEKIRITFNND....EGEWTVKKIDIKR
A7GMV7_BACCN/31-119              LEDALYSVLFPQINAAMEKHYGKL.......KPY..DCPKIVSLKKLYS.GTYV..FQAVIEVTKYEPGTGGEKVPPFEKVNVTFNNE....EGEWNVTKVEVKR
Q0SPX1_CLOPS/175-262             VNNFILTLLNPYIKAEITKLYESD.......MYYCLKDVEVLEVFKAQADNECEFNYKIYVGVKV......GTMPTSYNNLIIEFLVT....PNAVSTLSVKNPR
E6TVR7_BACCJ/33-124              PEEVLVDMLHPYITEAVKKECGDN.......VTWSFERVKNIHLMVEHMKNKSRRWYEVSLTIRTMNE...DNEADAWQIDTVTFNID...PKTYFGSSDVKRKS
D9SVN9_CLOC7/42-122              YQNLYEELLTPEITKEIGNYYGQY.......YNYDINKIDILNVYRSYDN......FKVRITTT.......DKEKKIIHIDEMTVEIN....EGKVTIKDFKHIS
C5D8E7_GEOSW/48-135              LEDLSIYFLTPYITKAVQDYYGKP.......SGIQWWKPKILEIKNLEPGSRYK..FLLKIRVETFK....GAHNPPYGIDIITLEID....FDKIRIIDYKHIE
B1BCP4_CLOBO/34-120              YDDFLITLLGTSIVSTLNEYYGEP.......RVFNLKGAKILEVKKVEEEGLY...FVVTVTVRNSD....RKTNSKNAIDTIILANT....SDGVHVVDFRHID
C5VNF8_CLOBO/34-119              YNDFLITLLGSNIINTLDDYYGKP.......RSFEMKNAEVLEVRKIEE.GMY...FIVTIRVRNFD....KRTNNDYGIDTMTLANT....SEGAQLLDFQHIK
C2NKE7_BACCE/134-219             LKEVVMNLLLEPISKEVENYYKEP.......KLWYRGSEKILEIKT....DKTNNIFYVTVQIQTFE....GAHNPPYGEDTITFCIK....GNDVKTIRYKHRD
C2XZE2_BACCE/138-219             LEQAFLRAIGLEILKATRTYYPHG.......RLY..TSPRIVDIVR....DEFNDKYKITVQIVTFE....GAHNPPYGFDTITLEIP......GFKVIRYEHVD
Q8ETK7_OCEIH/37-126              LKYAFINSLKEPIDEAIKEIYKDDTFATNEGLSWAPFQTEITEINQIYGVGGE...YEITLKIYPYY....RAHN.TYGEDLVVVNTD.......GELISYEHVK
Q8ETH7_OCEIH/36-124              LEYALIISLREPIDEAITTIYKDDKKAPED.LEWSADEAEILKIKQIGDVGEA...YEITLKVFPYY....GDKQ.IYGEDLLVVQAG.......GELVEFHHLD
A9KJA0_CLOPH/16-107              YQDVIITALAPTIDTAVADYYKNILSET...PFYDSTSIKILKIERPNGNRTSH..FIIDIEVKPFI....GPHI.TVGKDRISIELT...YPESPKLLKFKHIK
C5UQT1_CLOBO/48-136              YQDVVISLLIPYIQKEINNYYKEYLTEL...PIVFPYSVDVINVKREGGYL.....IELELIVHPFV....GPIN.IVGDDRIILKTG...AFGTVEIKKFEHVK
D3FXS4_BACPE/38-128              VQDIMMLQLTDPVSDAVKKYYAKSLKEV...PVVYPYEMSVLHIERMDGFRSFR..FKVVLDVVPVI....GPHI.RVGRDRVTLLVT....AGETKVISFEHIE
D3E9A3_GEOS4/41-135              YQDLLMLFLLPHIDEVVNRHYSHTLKEL...PVVYPYFVDVIQVKRVNGFRGFH..FVITLEARPVV....GPHI.PVGKDRLVFEVAPTIPGGMVKLVEYKHLN
B3ZXK4_BACCE/39-132              FQDMFLVFFNDILEKDVNKYYSKYTDKR...VSIYPYQVSFLKVSRINGFRGYD..FIVEVEVTPVI....GPHN.IVGIERLKYQIS.FNLEKKAKLIEYRHLK
A3I9T0_9BACI/51-145              LQDMLMNMLAPYIEKDLTNFYYPKISKEFS.PHVTPWKIDVIETRRVNGFRGFI..LEITFEIEPTD....GGHNIPIGKDRMTYEIS...SGPEIKLIHHTHLK
#=GC seq_cons                    hpDslhshLtP.IscslpcaYuc........h.a..ppscllclc+hts.spa...Fhlslclpsa.....Gs+ssshupDplThpls.....stscllcacHhc
//