# STOCKHOLM 1.0 #=GF ID DUF4056 #=GF AC PF13265.1 #=GF DE Protein of unknown function (DUF4056) #=GF AU Aldam G, Mistry J #=GF SE Pfam-B_2502 (release 24.0) #=GF GA 21.10 21.10; #=GF TC 22.10 71.80; #=GF NC 20.70 19.50; #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq #=GF TP Family #=GF WK Domain_of_unknown_function #=GF DR INTERPRO; IPR025130; #=GF CC This family of proteins is functionally uncharacterised. This #=GF CC family of proteins is found in bacteria. Proteins in this family #=GF CC are typically between 355 and 380 amino acids in length. #=GF SQ 27 #=GS Q7MB90_PHOLL/42-312 AC Q7MB90.1 #=GS C0AR18_9ENTR/45-315 AC C0AR18.1 #=GS D3VAY5_XENNA/38-308 AC D3VAY5.1 #=GS D3V5F1_XENBS/42-312 AC D3V5F1.1 #=GS B6XD58_9ENTR/44-314 AC B6XD58.1 #=GS D1P721_9ENTR/44-314 AC D1P721.1 #=GS B2Q590_PROST/44-314 AC B2Q590.1 #=GS D4BZP2_PRORE/44-314 AC D4BZP2.1 #=GS A6AYW1_VIBPA/16-291 AC A6AYW1.1 #=GS A8GZB0_SHEPA/57-329 AC A8GZB0.1 #=GS A6D0P4_9VIBR/16-284 AC A6D0P4.1 #=GS D0I8S2_VIBHO/1-268 AC D0I8S2.1 #=GS A7N703_VIBHB/15-285 AC A7N703.1 #=GS B8K4K2_VIBPA/8-278 AC B8K4K2.1 #=GS Q7MFU8_VIBVY/18-290 AC Q7MFU8.1 #=GS D7H9M2_VIBCL/16-286 AC D7H9M2.1 #=GS Q2C9E6_9GAMM/19-289 AC Q2C9E6.1 #=GS Q5E0J9_VIBF1/17-286 AC Q5E0J9.1 #=GS D0Z3M1_LISDA/18-288 AC D0Z3M1.1 #=GS C4UAY8_YERAL/10-280 AC C4UAY8.1 #=GS D0Z9B3_EDWTE/41-311 AC D0Z9B3.1 #=GS B4TMZ6_SALSV/41-311 AC B4TMZ6.1 #=GS D4BJ26_9ENTR/40-310 AC D4BJ26.1 #=GS A8G876_SERP5/37-307 AC A8G876.1 #=GS A8GES2_SERP5/35-305 AC A8GES2.1 #=GS C1M4I8_9ENTR/31-301 AC C1M4I8.1 #=GS A6T9F8_KLEP7/37-307 AC A6T9F8.1 Q7MB90_PHOLL/42-312 WPVLAPIP.SPEGLRACCAFGYNLKTELLTIPVPFYHISNVLDADNLGAHNYNNSFFGT...VASLTG..LSNEKVGMIYTRRGGFIDISHVRDTADNAVFLFSQIWPRLGEEWQIELSSELALRRIQF.YQ..FTPPASIEQRYTLTAYLAAKLAFELAAWHEIAQWYGYQSVPGFSEKVSAFSPEDLYSNLLGARLSLSLILAGQVPSMKQYRLSMQAILPPALRELEALSPDETRKMFEQVDGIWWDSKRRVPDKRLILQRDFHTHSDRTPNMVPTE C0AR18_9ENTR/45-315 WQTPTPLT.APNGLRPCCAFGYNLKVKAFEIPIPFYRIDNVVEASALGNHRYNDSFWLG...TVAVLG..IGSEKSGLIYSHKGGFLDIAHIRDTADYTYYLFSHIFPKLGQEWTLALSDELAQRKIHF.NA..FTPPKNELERYTLSAYLAAHLGYRLAVWHEIAQWYGFRSVPGFSEGISAFSPEDLYSNLIGARLSLTLILKGHATSLEQYNQSMQGIIPSALYQLEAQPRQLTQQWFDVIDGQWWDSQQRVPDKFLVLMRDYHISDQRYPVLPFEE D3VAY5_XENNA/38-308 WTALSPIS.PPEGLRACCVFGYNIKAKLGGIPVPFYNIDNIVEAGKLGEHHYNDSVLGA...SAALLG..VSDEKIGLLYTHKGGFVDISHVRDTADYTLFLFSQIYARLGQKWELTLDNELAARKIHF.FA..FTPPEDPAERYTLSVYLATKLAFKLAVWHEIAQWYGYQSVPGFPESVSAFSPEDLYSNLLGARLALTLILEGHASSVSQFSAAIAKILPTALSELGDYSRSGTKEMFDSVDGLWWNSYQRIPEKFLVLHRNYDIQDNRYPLMPSGK D3V5F1_XENBS/42-312 WPVLTPIE.PPEGLRACCAFGYDLKTEVVGIPVPFYDIDNIVEAEKLGEHHYNDSALGA...SAALLG..ISNEKIGLLYTQKGGFIDISHVRDTADYTLYLFSQIYAHLGQERKLSLSNELAARKIHF.FA..FTPPVDPVERYTLSAYLAAKLAFQLAAWHEIAQWYGYQSVPGFPEGISAFSPEDLYSNLLGARLALTLILQGHASSVTQFTTSMAAILPSALHKLEPYSKSDTKKMFNQVDGLWWNSHERIPQKFLVLRRNYEIQDNRYPLMPSGK B6XD58_9ENTR/44-314 WPVLQNLD.APQGLRACCAFGYDLQAEVAGIPVPFYTIDNVVEADNLGQHHYNDSYFSA...AADLLG..ISKEKVGLIYTTEGGFIDIAHVRDTADYTLYLFSQIYPKLGEEWTLTLNHELASRQIHF.SA..FTPPASPAERYTLSTYLAAKLAFQLAAWHEIAQWYGYQSVPGFSEGISAFSPEDLYSNLVGARLASSLILQGRAESLAIFSQSLESLIPIALKQLGAQERSQTRHAFDKVDGLWWNSAKRVPDKFLVLTRNYDVTDSRYPFLPTQA D1P721_9ENTR/44-314 WPVLSSLG.APQGLRACCAFGYNIRAEISGVPVPFYLIDNIVEANKLGEHHYNDSYLAA...TADIVG..LNSEKVGLVYTTDGGFIDIAHVRDTADYTLYLFSQIYPNLGKEWTLKLSDELASRQIHF.NS..FTPPESAVERYTLSTYLAAKLAFQLAAWHEIAQWYGYQSVPGFSEGVSAFSPEDLYSNLLGARLASSLILQGRAESLAIFSHSLETILPVALNELGAFNKEKTREVFDRVDGIWWDSSKRVPNKFLLLTRDYDVADSRYPFLPTQT B2Q590_PROST/44-314 WPVLSPLA.PPQGLRACCAFGYDLHAQLWGIPVPFYTIDNIVEADKLGEHHYNDSFFGA...TAALMG..VSKEKVGLLYSEKGGFIDISHVRDTADYTLFLFSQIYPKLGEGWTLKLSDELASRQIVF.HS..FAPPTSAQERYTLSAYLAAKLAFQLAAWHEIAQWYGYQSVPGFSEGISAFSPEDLYSNLLGARLAMTLILQGRAQSLPMFSQSLENTLPIALEQLGANSKSQTRKMFDRVDGLWWNSYQRVPEKFLVLTRDYDTSDNRYPLIPLQM D4BZP2_PRORE/44-314 WPVIASLA.PPQGLRACCAFGYNLQAELWGLPVPFYTIDNIVEANSLGEHHYNDSFLGA...SAALMG..LSNEKIGLLYTDKSGFIDISHVRDTADYTFYLFSQIYPRLGQQWSLSLSEELADRQIHF.SA..FEPPQSAKQRYTLSAYLAAKLAFQLAVWHEIAQWYGYQSVPGFSEGVSAFSPEDLYSNLLGSRLALTLILQGRAGSLATYSQSMENILPLALHQLGSKDRKTTRKIFDSVDGLWWNSYRRVPEKFLVLTRDYQTSDQRYPLMPPQI A6AYW1_VIBPA/16-291 ESRYPQLT.VPQNVRPCCAFGDMQKVKIGAVPVPFFRLSNVVELEEIGPHKFASGIYHYTPSSSSALG.HGGSENNGILYTQKGGFIDLAHVRDTADDTMGLFFEILANLGQAHRIDLPAELGPRYIEMASF..DASSLTGEQRWSVAAHLSARLAYFKAESHEIAQWHGYASFSGWPETISAYSLEDLYSNMLGSKIVLNLIQQHKMLSEREYNQNVSLLLNASLQELGVVDKSQSKLVLAAVDGKWWNSHESIPNKYMVLQRHYDLGDVQTPHRLTPE A8GZB0_SHEPA/57-329 QE.LPLVQ.IPKAVRPCCAFGNAQKVTIGPVPVPFFRYANTLAVDSVGPHAYEAGTFSY...QKDAPNGRRGTENNGQMYTLQGGFIDLAHVRDTADNAIALFYRIYPKLGESQSIKLPDEIGPRVIELSEF..DVSNLSPRQHWEVAAAISVRLAYFMAEAHEIAQWHGYRSWAPWSETVSAYSPEDLYSNMLGAKIALALINNNLAMNKELYNQHMTQWLAATLNWLEPVSIGHTNALFDVIDGHWWDSNQPLPSKFMLLKRHYQLGDKQSPYLVPKT A6D0P4_9VIBR/16-284 QPSFADVNTVPVGIRPCCAFGTGLKAELGSVPVPFYSIKNVLNVEDVDAHVFNDGSSSV...IGSLIG..TSDEVNGLIFSNKGGFIDTAHVRDTADFTLYLYHSIKNRDSDEFELALTPELRARRIVF.NNLDQLDSANNEQ.....AKLAGLLAFRLAQWHEIAQWYGLVSVGGFKEYPSAFSPEDLYSNMLGALIAMEIIKINPDITQDAFVVLFPQYFRKHLKMLDAQDEDTTIAQLKKLDGIWWDSSKRLPNKWVVKTRDYHYSLDLVPNGVTKG D0I8S2_VIBHO/1-268 MSLAE....APVGVRPCCAFGKDLKAQVGGVPVPFFSVGNVLDVDGVGHHRYNDGSEGV...SSSLLG..MGKEHNGLIYTELGGFIDTAHVRDTADYTYYLFSEIRRHIGTDAEIRLPAELRERVIVL.KA..QPGGLPQKTQRQLSVEIAGVMAFRLAQWHEIAQWFGLMSVAGFKELASAFSPEDLYSNMLGAQLAMGILRDSPDLDLQGFGKAMDIALAEKLKALKAVSSQETASRIEALDGIWWDSSKRLPDKWVLLHRDYALSLSLLPNGVAGG A7N703_VIBHB/15-285 FVQAQELK.APVGVRPCCAFGVDLKAQLGSVPVPFFSLENVLSSNEVGTHHYNDGSESV...SGSLLG..LNEEANGIIFTELGGFIDTAHVRDTADYTYYLFTLNQHYLGRAAHLDLPKELRVRRIRW.YE..QKEKLSEEEKLDRSAQAAALTAFRLAQWHEIAQWFGMVSVSGFKELASAFSSEDLYSNMLGAKLAKQVLLDNPELDQKGFSKAMDSAFKQALKDLKAQSKAITKEKIQQLDGDWWDSSRRLPDKWVVRFRDYHMALNLTPNYPTAS B8K4K2_VIBPA/8-278 NVHASELN.APVGVRPCCAFGVDLKAQLGSVPVPFFSLENVVDKGSVGDHHYNDGSASI...SGSLLG..LADETNGLVFTKLGGFIDTAHVRDTADYTYYIFQLNKRYLSTSHHIDLPAELRLRRVTW.HP..QTQPLSKEQKITYSAEAAALTAFRLAQWHEIAQWFGMVSVGGFDELASAFSSEDLYSNMLGAHLAKQILIAAPTLNTKQFSAAMDHALETALSELNAVTKSVTKERIQQLDGIWWDSSKRLPNKWALIYRDYHLSLSLMPHYPTAT Q7MFU8_VIBVY/18-290 SLAFAEVE.APVGVRPCCAFGYDLKAQLGGIPVPFFSVGNVVDADKIGQHRYNDGSQSV...SGNLLG..LGDESNGLIFTQQAGFIDTAHVRDTADYTFYLYQENLAHLGQEYQVELKQELRVRQIHW.QPQFQAESLSQAEKVQRSAEAAAFIAFQLAQWHEIAQWFGLMSVGGFDELASAFSPEDLYSNMLGAQLAKQVILTNPTLDKKTFSKNVDRALQERLSELKAQSKKITQQKIEALDGQWWDSARRLPDKWLLLKRDYHLGYTLQPNYPGSE D7H9M2_VIBCL/16-286 QPVQAIPT.PPIGLRPCCAFGYNLHAQVAGIPVPFFSVDNVIDVDALGGHHYNQGDQSL...STSLLG..LSEEHNGLIFTKRAGFIDTAHVRDTADFTYYLFKLNLAQLGHEAQITLPTELRSRQIHW.KN..QSVSLDPKERVIRSAQAAAFIAFQLAQWHEIAQWFGLTYVSGFHEQASAFSPEDLYSNMLGAKLARDVLLANPDTNKQEFEKIFAHLFEDELRKLKAQPSSVTQQKIQQLEGIWWDSQRRLPDKWLLLKRDYHLAYALLPNEPTAD Q2C9E6_9GAMM/19-289 SSPTKALT.APVGVRPCCAFGQDLKTELFGVPIPFFSLENIVDASKLGKHIYNDGSQNV...IASLLG..LGNESNGLIFTVKGGFIDTAHVRDTADFTYYLYQQIHQHLGSDYRITLPTELRKRDIIL.KR..SKRTLTDREKQTISIELAALLAFRLAQWHEIAQWFGYESVVGFPEYVSAFSPEDLYSNMLGAITAKQVLEQQPALSSSDFSQAMTDAFNDQLRHLGSVSSEETKRNIQQLNGQWWDHNTRLPQKWVVLKRDYQLGLTRIPNGVKNG Q5E0J9_VIBF1/17-286 SSFSVYAD.APVGVRPCCAFGTNLQTEVGGIPVPFVSVENVLNIDDLGDHIYNDGSQSV...ASSLMG..LGDESNGIFYSEKGGFLDSAHVRDTADFTYYLYTEFKAHLGTDYSITLSPELKDRVIQL.TE..SKSNFTFEEKQNISVELAALTAYRLAQWHEIAQWFGMESVGGFKELASAFSPEDLYSNMLGAKIASSVIAKNPNLSKDDFSKAMTKAIEAKFIELGVVSKEESKAQIKSMDGVWWDSDKRLPNKWVVIHREYHLGTDLRPNGFKN. D0Z3M1_LISDA/18-288 GSVNA.MD.APVGVRPCCAFGKDLKAEVGGVPVPFFSIGNILGIEDLGSHVYNDGSQGV...SSSLLG..MGKETNGIVYTQKGGFIDIAHVRDTADFTFYLYQEIHSKLGSGTSIVLTPELRSRHVYLPKK..DTHSLTAQERQQISVELAGLMAFRLAQWHEIAQWFGLESVGGFSELASAFSPEDLYSNMLGAKVAMNILQQQPSISKQTFSQIFTQNLKAKLIALDIVSADKAKQKMASLDGQWWDSSKRLPQKWVVLKRDYRLRLDLQPNGVANG C4UAY8_YERAL/10-280 WPVTKKLS.SPDGLRPCCAFGYNLSVQVLGVPVPFYHLDNVVEADSLGEHHYNDTLLGA...TKNLLG..VSSEHDGIIYSAHGGFIDIAHVRDSADMTFFLFSHIVPHLGQAQNIALSEELAQRRIAL.FA..FIPPQNEAEHYSLSAYLAGYLAYQVAAWHEIAQWYGFESVVGFSEGISAFSPEDLYSNLLGTRLAISLILTGHAGSVMQFNVAMDEILPQALHQLGAVSADETRFQFDMLDGNWWDSHRAVPEKFLLLKRNYQTESDRVPTPVPGE D0Z9B3_EDWTE/41-311 WPVSAPLP.PPDGLRPCCAFGYDLNAEALGVPIPFYRLNNVVEADALGGHRYNDSLFGA...LASLAG..LGSERNGLVYTRRGGFLDLAHVRDSADMTVYIFSHLYPRLGQPFHLALGDELAQRQLVF.SA..FTPPSAARERYTLAAYLAARLAFEVAAWHEIAQWYGYESIPGFSEGVSAFSPEDLYSNLLGTRLALTLILNGHAASLGQYSAALTTLLPQALCQLQAQPAVLTRFQFDMLDGKWWDSRQAVPQKFLVLKRNYDTRDDRLPTPVSGE B4TMZ6_SALSV/41-311 WPTMPPQP.LPKGLRPCCAFGYDLHAELLGLPVPLYQLNNVVTVDSLGHHQYNDHLYSG...VANLIG..LSGENNGIVYTLRGGFIDTAHVRDTADMTVYIFSQLLPKLGQAFTLNLGEELAERRLVF.TA..FTPPVDARERYTLAAWLSAHLAFQVAEWHEIAQWYGFESVRGFSEGVSAFSPEDLYSNLAGARLAASLIVGGQTKTQEMYNTAMETALRQALTQLAAQPAQITRFQFDMLDGRWWNSQRRVPEKYLVLHRNYQMGDDRLPTAIPGE D4BJ26_9ENTR/40-310 WPVVSPLP.APQGLRPCCAFGYDLHAQVLDMPVPFYELDNVVAADGIGEHRYNDSLLLG...LVNLAG..IGHEHNGIVYTSHGGFIDIAHVRDTADMTVWLFSHLLPQLGQPFTLRLDDELAERHIVF.NA..FTPPATAGDRYALAAWLAAHLAFQLAAWHEIAQWYGFESVPGFSEEVSAFSPEDLYSNLLGARIAVSLILDGQLATSGMYDAAMNNALRQALTQLGARPEPLTRFQFDMLDGKWWNSQRRVPEKYLVLHRNYDVSDSRLPTPVPGE A8G876_SERP5/37-307 WPVAAPLP.PPGGLRPCCAFGYNLKAQAWGIPVPFYQLGNLVDADRLGTHHYNDSAFNA...ISNLLG..IGSEQLGLIYTHRGGFIDIAHVRDTADNTLFLFSQLLPRLGQQWHIDLSPELATRRIQF.NA..FSPPQDAAQRYTLAAYLAGEIAFQMAAWHEIAQWYGYRSVPGFSEEVSAFSPEDLYSNLLGARLAIDAILQGQAVSLTAYNSAMERLLPQALHQLGAVSIAATQRQFDGIDGDWWDSHRRVPEKFLVLKRDYATGSNRLPALPPFE A8GES2_SERP5/35-305 WPVAQNLS.PPESLRPCCAFGYNLQVRAAGIPIPVYQIGNLLSLSTLGHHHYNDSALGA...VKNIVG..LSDEANGLIYTRRGGFIDIAHVRDTADNTFYLFTRLYPKLGREWRLFYSEELGLRRAQF.YA..FTPPASMTDRYNLAAWLAGHVAFQLAQWHEIAQWYGFQSVAGFSEEISAFSPEDLYANLLGARLAVNVILQGHAGSVENYNLAMDKALSEALIGLEAVNEAETERQFREVDGDWWNSKRRVPDKFLVLKRNYSLGENRIPTAVPFE C1M4I8_9ENTR/31-301 YPVVSHLA.PPESLRPCCAFGYDLHVRAIGVPIPVYQIGNVLTLDSLGRHHYNDSALGA...VKNIVG..LSEEKNGLLYTHRGGFIDIAHVRDTADNTFYLFSRIYPKLGQQWRFFYSEELGVRRIQL.HG..FTPPAAMAQRYTLAAWLAGNLAFELAQWHEIAQWYGFESVPGFSEQISAFSPEDLYSNLLGARIAINVILQGRVESIAAYNAAVDRELQRVLLQLGVATRTETERKFRELDGDWWNSKRRVPDKFLVLKRNYNLEHNRLPTPVSYE A6T9F8_KLEP7/37-307 APTLGELP.PPESLRPCCAFGYDLHVRAAGIPIPMYQIGNVLTLGTLGKHHYNDSAFGA...VKNLLG..LSEEQNGLIYTRRGGFIDIAHVRDTADNTFYLFNRIAPTLGQAGRIFYSEELGVRRVQL.NA..FTPPAGVRQRYQLAAWLAGHLAFEIAQWHEIAQWYGFQSVPGFSEEISAFSPEDLYSNLLGARLAINVILSGHGGSLEDYNQAMDAALKQVLTRLLVATRGETEAMFQQIDGDWWNSHRRVPDKFLVLKRNYDLQENRLPTPVPFE #=GC seq_cons hsshs.ls.sPpGLRPCCAFGYsL+sclhGlPVPFYplsNVl-s-sLGpH+YNDuhhus...susLlG..lusEpNGLlYTp+GGFIDlAHVRDTADhThYLFopIhs+LGppaplsLssELusRpIpa.ps...ssPhssp-RasLoAaLAApLAFpLAtWHEIAQWYGapSVsGFsEtlSAFSPEDLYSNhLGA+LAhslILpupshShptaspuhsphL.puLppLtAhscspT+ptFcplDGhWWsSp+RlP-KaLVL+RcYclupsRhPshsstp //