# STOCKHOLM 1.0 #=GF ID HTH_27 #=GF AC PF13463.1 #=GF DE Winged helix DNA-binding domain #=GF AU Coggill P #=GF SE Jackhmmer:D2BJI8 #=GF GA 22.20 22.20; #=GF TC 22.20 22.20; #=GF NC 22.10 22.10; #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq #=GF TP Domain #=GF SQ 61 #=GS D2BJI8_DEHSV/52-119 AC D2BJI8.1 #=GS C8RUZ7_CORJE/36-102 AC C8RUZ7.1 #=GS C6XNX1_HIRBI/84-160 AC C6XNX1.1 #=GS A8YU25_LACH4/29-95 AC A8YU25.1 #=GS C2KDC6_9LACO/29-95 AC C2KDC6.1 #=GS C0WMI9_LACBU/38-102 AC C0WMI9.1 #=GS A8YVI3_LACH4/23-90 AC A8YVI3.1 #=GS B6B1J6_9RHOB/53-118 AC B6B1J6.1 #=GS A4U4U9_9PROT/35-100 AC A4U4U9.1 #=GS C3Q182_9BACE/30-95 AC C3Q182.1 #=GS C2LX20_STAHO/30-95 AC C2LX20.1 #=GS D4JB08_9FIRM/31-98 AC D4JB08.1 #=GS B1BYR8_9FIRM/32-99 AC B1BYR8.1 #=GS D2EIY5_PEDAC/29-93 AC D2EIY5.1 #=GS Q9RHM7_CORGT/53-119 AC Q9RHM7.1 #=GS A5VHA7_SPHWW/40-105 AC A5VHA7.1 #=GS E6VPX9_RHOPX/35-99 AC E6VPX9.1 #=GS A5VH13_SPHWW/115-182 AC A5VH13.1 #=GS A9H2E4_GLUDA/72-137 AC A9H2E4.1 #=GS B7QZE3_9RHOB/55-120 AC B7QZE3.1 #=GS C4LFV1_TOLAT/52-117 AC C4LFV1.1 #=GS B9YY57_9NEIS/51-116 AC B9YY57.1 #=GS D2ZCF0_9ENTR/64-129 AC D2ZCF0.1 #=GS C4ZLB2_THASP/51-116 AC C4ZLB2.1 #=GS B9MHD7_ACIET/72-137 AC B9MHD7.1 #=GS Q7VXA9_BORPE/51-116 AC Q7VXA9.1 #=GS C6BIH6_RALP1/71-136 AC C6BIH6.1 #=GS Q16DH9_ROSDO/53-118 AC Q16DH9.1 #=GS A6X5K8_OCHA4/84-149 AC A6X5K8.1 #=GS A9DDY4_9RHIZ/59-124 AC A9DDY4.1 #=GS A4YLN8_BRASO/90-157 AC A4YLN8.1 #=GS Q47GF0_DECAR/52-119 AC Q47GF0.1 #=GS Q0A5S7_ALHEH/71-138 AC Q0A5S7.1 #=GS Q46Q08_CUPPJ/61-127 AC Q46Q08.1 #=GS Q98G84_RHILO/95-161 AC Q98G84.1 #=GS A8LHD5_FRASN/33-98 AC A8LHD5.1 #=GS B4V765_9ACTO/35-94 AC B4V765.1 #=GS B5HZC3_9ACTO/33-102 AC B5HZC3.1 #=GS B5GIQ6_9ACTO/33-97 AC B5GIQ6.2 #=GS Q9K3W8_STRCO/54-118 AC Q9K3W8.1 #=GS B4UX24_9ACTO/52-116 AC B4UX24.1 #=GS C3JVH6_RHOER/33-95 AC C3JVH6.1 #=GS B1W3J2_STRGG/39-105 AC B1W3J2.1 #=GS E8VZ45_STRFA/39-104 AC E8VZ45.1 #=GS C7PMQ8_CHIPD/31-93 AC C7PMQ8.1 #=GS D2BB48_STRRD/37-98 AC D2BB48.1 #=GS D7B7D5_NOCDD/30-91 AC D7B7D5.1 #=GS D2PQP2_KRIFD/34-88 AC D2PQP2.1 #=GS D1A4C1_THECD/33-96 AC D1A4C1.1 #=GS A1R7Q1_ARTAT/29-91 AC A1R7Q1.1 #=GS C5C8F6_MICLC/43-102 AC C5C8F6.1 #=GS A4AEG5_9ACTN/31-103 AC A4AEG5.1 #=GS C6RKH7_ACIRA/45-111 AC C6RKH7.1 #=GS D3HFZ9_STRG3/28-94 AC D3HFZ9.1 #=GS E3IXY4_FRASU/29-95 AC E3IXY4.1 #=GS C8KZF2_9PAST/27-95 AC C8KZF2.1 #=GS D2QNJ1_SPILD/106-173 AC D2QNJ1.1 #=GS D2QDP4_SPILD/76-143 AC D2QDP4.1 #=GS Q11RR9_CYTH3/79-146 AC Q11RR9.1 #=GS C6X6B3_FLAB3/87-153 AC C6X6B3.1 #=GS D7W532_9FLAO/90-157 AC D7W532.1 D2BJI8_DEHSV/52-119 VTPEQAII.MVEIH.......NSSVSMTP.TRLGKIIRRD.AAAVS......RILGRMQKN..GTI..NLIKDLEYKNL....IRIELTPKG C8RUZ7_CORJE/36-102 LTNSQAEA.IEIIG........TYGPMST.REVGDYLICE.SGSPS......RLLATLAEK..RLT..MTSQSAEDKRI....TLHALTPAG C6XNX1_HIRBI/84-160 LTRQQACI.LWTIRAEGENGVRMRRKDIE.AALCKWYDVT.SSAIS......KSLRAMTRPPFDLL..QMTEDPMNGRE....KFVSLTPKG A8YU25_LACH4/29-95 LSDYLSVI.LYELL........LRKKLTQ.KQLVGLTDLP.KQSIN......KGIKILHDS..GYL..AMSVDPHDKRV....RFCELTAAG C2KDC6_9LACO/29-95 LPDYLVVI.MYELL........IRGKLTQ.RELVNLSDLP.KQSIN......KGIKILRDH..DHI..TMTVDPSDKRV....RFCQLTEAG C0WMI9_LACBU/38-102 LNPTAACI.LLTIK........DNQYINQ.NQVAKSLVID.KGLAA......REIKKMQNL..GYL..TKTAGV..GKS....IILNLTDTG A8YVI3_LACH4/23-90 LNISQTRI.LLFFD......DTNNKALAM.GKLAKALNIS.LSTLS......RQLQQKKTK..SLI..EITRSEKDSS.....KIVNLSAEG B6B1J6_9RHOB/53-118 INAVQALL.LFNIG.........DNEVTA.GELKSRGYYQ.GSNVS......YNLKKLVEM..DFM..HHQRCEIDRRS....VRVKLTPKG A4U4U9_9PROT/35-100 INAVQALL.LYNIG.........ENEVVI.RDLKDRGYYQ.GSNVS......YNIKALTEY..GYL..TQERSAHDRRS....VRLKLTDKG C3Q182_9BACE/30-95 VSLNEAMA.LCCIG.........GDTLTA.SVISENTGLS.ASHTS......KVIRSIEEK..ELI..VRNLGDKDKRQ....MHFTLSDKG C2LX20_STAHO/30-95 LHTGQWLV.LKDIA........TYDQTTL.VQISKRRFIE.KPTAR......KIIKVLFEK..DLLLVTQG...TDKRE....KLLSLSEKG D4JB08_9FIRM/31-98 VKRVEIEI.LRFLA.......MSGERNTA.ADIHRYLDLN.KGQIS......KTLEHLCTM..HYL..ESMPDKKDRRY....MHYILSEEA B1BYR8_9FIRM/32-99 LTANEMEI.ISHIY.......LSKEHQTP.LSISQATNMK.KEAVS......RSLKNLFNK..KLL..NKIKCPFDERS....YYLIITPRG D2EIY5_PEDAC/29-93 .TVADWKM.VNYVN.........DARLTT.LNLVELSGLD.KSTVS......RQLKHAIQH..NFL..QKQSNEIDQRK....STFTITDKG Q9RHM7_CORGT/53-119 SSGVPYRI.LFSLW........TDGPMSP.LQVADKTGMK.KFAIS......NLLKPLLAE..SLI..VQVTAENDRRS....KVLSLSEKG A5VHA7_SPHWW/40-105 VRTSHIGL.TRNLD.........LDGTAI.TELARRAAMT.KQAMG......ELVVQCEAI..GLV..FRETSAEDARV....RIVRFTAEG E6VPX9_RHOPX/35-99 YRPRYTPV.LRAMS.........AGAETV.TDITARSTLT.QGAIS......QTVSLMLKD..GILAHHQL...DDGRK....TGLHLTRKG A5VH13_SPHWW/115-182 DRPPARQV.LEAIY.......ALGDGSEQ.STVRERTGQS.QSHFS......NMLSLLKGY..GLV..HSSTSRTSGRN....RCLALTDDG A9H2E4_GLUDA/72-137 LSPLDALI.LHSVN.......HRHRQKSI.SDLMFTLNLS.ERHYL.....NYAMKKLDRL..GLITRRRDGKE.........VFVGATEKG B7QZE3_9RHOB/55-120 LSPLDILI.LHNVN.......HRGKDKRL.TDICFLLNIE.DTHTV.....NYGLRKLLKA..GLLDSEKRGKE.........VFYRTSQTG C4LFV1_TOLAT/52-117 MTSLEVQL.IHHVT.......HRKTAKKL.ADICFVLNIE.DTHIA.....SYALKKLVKM..GYLASEKIGKE.........VYFSATESG B9YY57_9NEIS/51-116 MTALEVSL.IHHVN.......HRGRKKKL.ADICFVLNIE.DTHVV.....SYALKKLVRM..GYVESEKSGKE.........VFFSTTEAG D2ZCF0_9ENTR/64-129 MGAFDVSL.LHHVN.......HRDRKKKL.ADICFVLNVE.DTHVV.....TYALKKLVKA..GYVTSEKAGKE.........LYFSTTEEG C4ZLB2_THASP/51-116 MTPIDVLV.LHHVS.......HRDSEKRL.ADICFVLNVE.DTHVV.....SYSLRKLAGL..GLVQSVKKGKE.........AFFSVTERG B9MHD7_ACIET/72-137 LTPLDVVV.LHHVT.......HRARDKRL.ADICFIMNVE.DTHVV.....NYSLKKLLAL..GVVASSKNGKD.........VTYAATEAG Q7VXA9_BORPE/51-116 LTANDVMV.MHHVY.......HRQRPKKL.ADICFTLNVE.DTHIV.....SYSLKKLERH..DVVRGDRSGKE.........VFYSVTPKG C6BIH6_RALP1/71-136 LTFLDVLV.VHHVN.......HRGRAKRL.ADICFVLNVE.DTHLV.....TYSLKKLQGM..DLVEGTRNGKE.........VTYTTTEAG Q16DH9_ROSDO/53-118 LGALDVLV.LHSVY.......HRERPKKL.ADICLVLNVE.DTHTV.....NYAIKKLIKA..GLVKDGRQGKE.........KTVVATKKG A6X5K8_OCHA4/84-149 LSPIEVLI.LHSIR.......HRDREKKL.ADICLVLDIE.DTHIA.....TYAIRKLENA..GLLTTGKAAKE.........KTVKITAKG A9DDY4_9RHIZ/59-124 LSSMEVQI.LHAVN.......HRERDKTQ.ADLCMMFNIE.DTHVV.....AYALKKLQTL..GLVAPGRRGKE.........KTARITREG A4YLN8_BRASO/90-157 LTGDDVAV.LNVVR.......MGDEPKRL.AEVGQLLNRV.DVPNL.....QYATRKLVRA..GLI..ETEGR.SSRKE....TRYRATARG Q47GF0_DECAR/52-119 IKYQEYII.LHVVR.......MLDRPKNS.TMIARIVNRD.DIPNI.....QYSLRKLESA..GLI..EKQKD.RNSKT....FSYIATEKG Q0A5S7_ALHEH/71-138 LNYSELII.LHVIN.......MQSHPQPS.ALIARQLNRD.DLPNI.....QYSLRKLIKQ..GLV..EKVKD.TGGKT....YCFDATDKG Q46Q08_CUPPJ/61-127 LSGQENTL.LHIIR.......MHDRPKTI.RDLAQMTNRQ.DIPNI.....QYDLRKLLKA..GLI..DKYGTA..RTG....IYYVTTEQG Q98G84_RHILO/95-161 ASGPENAL.LHIIR.......MNDRPKSV.RDLAQMTNRD.DIPNI.....QYSLRKLLKG..GLI..TRTGSG..RAG....VTYEVTPLG A8LHD5_FRASN/33-98 ITEPQWVT.LTLTVV....SGGTIDRAELIRRVSGATQFS.QASAA......ERITELTAA..GFL........RDGGD....GRVQVTDEG B4V765_9ACTO/35-94 LTFHQSVA.LKAVA.......DGLDRAGAVDRVSATLKID.GPRAH......ALLDELAAA..GLL........DGAG.......TALTDEG B5HZC3_9ACTO/33-102 VTFQQSVT.LRLAAV....AEGPVARDHIVEDVVGALKID.LAQAH......SVVDELVAK..GLV........APQGPFQGSSQLRITDAG B5GIQ6_9ACTO/33-97 VTFARQIA.LRAAAT....AEAPHTPDGLVAEVRGFLKTD.PAAVR......ADLDALLAA..GLL........ATDG.....AHLRPTGAG Q9K3W8_STRCO/54-118 VTFQQQVV.LRAAAT....AQTPPTRDGLVAEVRGALKAD.PAGIR......TVVDGLLDK..GLL........VADG.....AHLPATDAG B4UX24_9ACTO/52-116 VTQPQYWV.LNRVNG....GSAAPSREEVVAQLTHLADGP..REID......WVVDQLLHR..EWL........RIDDG....QRLHLTDAG C3JVH6_RHOER/33-95 VTQPGWWV.LHQLSL....HPEGVERAVLLRTIGPNESTD...VID......DAVDSALEL..GWA........REDG.....SVLRPTDAG B1W3J2_STRGG/39-105 LTQPPWWV.LNQLEGA...GEEGRGRAELVTMLSGYLDTG.ADGME......EAVEGLLER..GLV........TEDSG....ARLRSTPEG E8VZ45_STRFA/39-104 LTQPPWWV.LNQLTEA...DEHGRPRGEVVATLRGYLNVG..DSLE......PEIDALVAK..GLV........TQDPT....ARLRLTPEG C7PMQ8_CHIPD/31-93 ISRHHWLI.MQRIAE.....QESIITWEFFQEIKSTVNAQ...QFG......EIIQSMLDR..GWV........TVSAE....DKCAFTAEG D2BB48_STRRD/37-98 LTRRHWQV.MNVVA......REPSTVESIDAELSPFLTAE.QPSLR......PLARELRER..GWL..........DGD....GELSLTEAG D7B7D5_NOCDD/30-91 LGRRHWQV.LHSLH......TDPGTIADLDRRLAAFLDED.EYSVT......PVVEELRRR..GWV..........EGL....VSLNLSTAG D2PQP2_KRIFD/34-88 LSRRQWQA.LNAAS..........EEQPIAVALAPFLAGD.PAELA......AVTDPLAGR..GWL.................DGEQLTPAG D1A4C1_THECD/33-96 VGRRHWQL.LNTLQ......AGPLEEGALAERLRPFWREG.AITLA......EVIGDLTER..GWL........EPDGA....GRHRLTAGG A1R7Q1_ARTAT/29-91 LTRRQWHT.LGTLS......EGAMRPDRLEDILQPLWGGD.ARLRE......RELAALVGR..GMI........TMID.....DRLALSERG C5C8F6_MICLC/43-102 LTRAQWQL.LNTLT..........VAPQSRAELEAGFEEEQRGAVS......GQIEELVES..HWV........TVEG.....DLYTLTATG A4AEG5_9ACTN/31-103 ITRRQWQL.LNVLSKG..AAGVDRLDIEIAPYLSPVTGAS.PPTQGTHTSSLESLTELVES..DWL........TTDG.....TLYELTDRG C6RKH7_ACIRA/45-111 IDNTRRKI.ILSVN........AVSEASI.TEIANLSTIK.LTTAT......KAVYRLVED..DIV..EVFSSQLDERV....SMVKLTEKG D3HFZ9_STRG3/28-94 LNNNLFIY.IIRVC........EKPGMFL.GELADNVQID.RTTAF......RTIKKLATL..GYF..ELKKDAVNQKI....KRVYPTEKA E3IXY4_FRASU/29-95 LSGPTRAI.VFDVF........ENPGSSI.SEITARVEFP.QSQVS......ACVARLREA..EVF..ETVSDPADRRR....TLVRPTASA C8KZF2_9PAST/27-95 LGYNHFAV.LYSLA......AAESGQCTQ.KQICDEWLXX.XXXXF......NVCKEYKEK..GWI..EFSESAVDKRE....KMMRLTADG D2QNJ1_SPILD/106-173 VKGMDDPVYLLVVL........QMGTPKK.SEVIYEMMAE.FASGT......DIINRHIRM..EYL..EEFPDEQDRRS....KRLRLTPKG D2QDP4_SPILD/76-143 LPTAESFYYLNGLR........YLGEVRK.TELIQYLFAE.YTTGM......EAISRLHEE..DYI..VERADPADKRA....KLISLTEKG Q11RR9_CYTH3/79-146 FKTLEDFVYLNNLK........ELGIVTK.KQLIDKHVTE.YTTGI......EIIKRLINL..GLV..KEKHYPDDKRS....TAIEITAKG C6X6B3_FLAB3/87-153 LVNEDFTY.LFRMM........DYDSLTK.MQLIEKNAHE.KQTGI......EIIKRLVKN..GLL..KESRDEKDRRS....TRIAVTAKG D7W532_9FLAO/90-157 FSTQEDFIYLINLK........AFGEMTK.MALIKKNIHD.KPVGM......LIIARLLRQ..GLI..EQTDSDLDKRS....KLIRISERG #=GC seq_cons lot.phhl.Lppls........ttpptph.sclsthhshc.psshs......tslccLhct..Ghl..t..tp..spt.....thhplTscG //