HMMER3/b [3.0 | March 2010] NAME RCC1_2 ACC PF13540.1 DESC Regulator of chromosome condensation (RCC1) repeat LENG 30 ALPH amino RF no CS yes MAP yes DATE Tue Oct 9 20:01:14 2012 NSEQ 320 EFFN 320.000000 CKSUM 2391518866 GA 21.70 21.70; TC 21.70 21.70; NC 21.60 21.60; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -7.2413 0.72282 STATS LOCAL VITERBI -7.2632 0.72282 STATS LOCAL FORWARD -4.2413 0.72282 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.35941 3.30775 2.98011 3.44700 3.71156 1.96886 3.37414 3.18605 3.55858 2.61578 4.28994 2.85475 5.07406 3.07292 3.43174 2.34734 3.02609 2.39605 3.62178 3.61265 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00013 9.35365 10.07599 0.61958 0.77255 0.00000 * 1 2.29834 4.68431 8.55442 5.81779 4.01241 4.46176 8.08231 1.58649 5.13234 4.20243 5.34464 4.19906 5.66732 4.12042 6.32356 5.11931 5.27399 0.61008 3.59050 4.77277 1 - E 2.68781 4.42388 2.77682 2.73286 3.46517 2.40676 3.71566 3.29517 2.67904 2.69518 4.24853 2.90510 2.73902 3.18309 2.89964 2.37315 2.77682 2.98681 4.58640 3.59158 0.03012 3.51912 10.07599 0.54410 0.86836 0.48576 0.95510 2 2.25777 5.35885 3.70112 2.53459 6.00138 3.90946 4.16041 2.10003 2.03864 3.02383 5.95541 4.63247 5.72170 4.75912 2.60726 3.15615 2.32045 1.57929 9.28484 6.04096 4 - E 2.68805 4.42412 2.77707 2.73311 3.46541 2.40700 3.72682 3.27044 2.67928 2.69542 4.24877 2.90534 2.73927 3.18334 2.89988 2.38074 2.77707 2.98706 4.58664 3.58263 0.03054 3.52938 7.19211 0.69199 0.69430 0.48576 0.95510 3 1.76123 5.44574 2.22153 3.99545 5.80240 4.66268 3.28220 5.47790 2.78230 4.94548 5.79509 4.70935 7.53243 1.67587 3.48117 1.23222 3.43350 5.52125 9.31074 4.17996 7 - E 2.69201 4.42808 2.75943 2.73707 3.46937 2.41096 3.73078 3.29937 2.68324 2.69938 4.25273 2.90226 2.72520 3.18730 2.90384 2.37207 2.76231 2.97981 4.59060 3.62086 0.06220 2.80899 10.07528 1.10586 0.40186 0.40484 1.09987 4 3.98904 7.98538 8.59904 7.98473 4.94472 5.80015 5.74494 1.11206 7.76798 1.84503 3.66229 7.96205 8.15614 7.89746 7.77199 5.75467 3.54360 0.86750 8.62037 7.44426 12 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00013 9.35365 10.07599 0.61958 0.77255 0.48576 0.95510 5 1.03668 4.04927 4.29959 3.79264 4.34973 4.34484 4.23710 5.41765 4.77912 7.16659 5.99675 3.47911 7.53759 3.44109 5.22442 0.95225 3.53892 3.07036 9.30040 5.25979 13 - E 2.69181 4.42788 2.77505 2.73687 3.44927 2.41076 3.73058 3.29917 2.68304 2.69385 4.25253 2.90045 2.73901 3.18710 2.90364 2.38450 2.76736 2.93846 4.59040 3.62066 0.11746 2.20017 10.07599 0.46450 0.99007 0.48576 0.95510 6 1.08170 2.41266 8.55687 7.94039 3.28540 2.76136 8.08277 2.62051 7.72166 3.60591 3.05928 5.43464 6.27543 5.33884 7.72422 1.81338 2.47242 2.84129 8.57199 5.27583 17 - E 2.68375 4.42427 2.77722 2.73326 3.46556 2.40370 3.72697 3.29556 2.67501 2.69557 4.24892 2.90549 2.73942 3.17627 2.90003 2.37558 2.77722 2.98105 4.58679 3.61705 0.03533 3.36172 10.07599 0.60251 0.79283 0.48576 0.95510 7 5.14479 9.52776 5.05821 7.22200 9.66379 0.20729 8.71825 9.17394 4.49743 8.67275 9.47909 2.36854 8.54590 7.89613 4.14816 3.36028 5.73263 4.57045 10.77987 5.47333 20 - E 2.68670 4.42277 2.77571 2.73175 3.46405 2.40564 3.72546 3.29406 2.67792 2.69406 4.24741 2.90398 2.73791 3.18198 2.89852 2.37381 2.77571 2.98570 4.58528 3.61555 0.01638 4.12248 10.07599 0.02468 3.71397 0.48576 0.95510 8 2.05958 6.49510 1.96705 3.05311 3.75768 1.94666 5.88078 4.83332 4.79159 2.76916 6.34762 2.35519 5.11339 4.08560 2.90916 2.23186 4.85088 2.65121 3.85887 2.89568 22 - S 2.68692 4.38917 2.77593 2.73197 3.46428 2.40587 3.72568 3.29428 2.67815 2.69429 4.24764 2.90420 2.73813 3.18220 2.89875 2.37961 2.77070 2.98592 4.58551 3.61577 0.02346 3.76594 10.07599 0.01747 4.05611 0.48576 0.95510 9 3.36598 4.31038 2.30991 3.29431 2.06627 2.72063 4.85274 7.71143 3.46476 3.42496 7.91938 2.41119 7.53326 3.33453 2.71800 1.92793 4.03970 5.34708 4.70557 1.70375 24 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00013 9.35365 10.07599 0.61958 0.77255 0.48576 0.95510 10 5.02677 8.32585 6.06830 6.58793 2.59659 5.43017 0.26159 5.50355 5.20491 5.68630 7.42097 3.91768 7.77363 5.25897 4.11400 4.38672 3.58943 5.14417 8.88755 3.23556 25 - E 2.69656 4.43263 2.78557 2.71008 3.47392 2.41550 3.73532 3.30392 2.68778 2.70393 4.25727 2.87650 2.74777 3.19184 2.90838 2.36698 2.78557 2.99556 4.59515 3.48127 0.06734 2.73212 10.07599 1.60479 0.22431 0.48576 0.95510 11 1.62244 4.42898 8.55675 7.94028 2.97148 2.86201 5.43819 4.43203 7.72158 4.14090 2.93951 3.75837 8.11197 7.84980 7.72418 1.50433 1.43715 3.44090 8.57200 2.52827 31 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00013 9.35365 10.07599 0.61958 0.77255 0.48576 0.95510 12 3.24124 1.02146 8.58237 7.96688 3.17709 5.68523 8.11182 2.78462 7.74912 1.37857 3.09272 7.94349 8.13804 7.87734 7.75215 7.08846 3.98266 1.85117 8.59942 4.06193 32 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00137 9.35365 6.66038 0.61958 0.77255 0.48576 0.95510 13 0.75315 4.98712 8.55587 7.93938 2.56586 2.53671 8.08167 2.77784 7.72063 2.59975 4.89351 7.91491 8.11086 7.84880 7.72314 2.68801 5.12619 2.06074 6.03836 4.14429 33 - E 2.68676 4.42283 2.77578 2.73181 3.46412 2.40571 3.72553 3.29412 2.67799 2.69413 4.24748 2.90405 2.73798 3.18204 2.89859 2.37945 2.76647 2.98576 4.58535 3.61561 0.01848 4.00277 10.07475 0.02201 3.82710 0.36039 1.19536 14 4.76212 5.48216 8.55711 7.94062 5.82350 7.74856 8.08292 1.87063 5.84448 0.44002 4.28311 7.91616 8.11211 4.83670 4.08695 5.06249 3.98690 2.16417 8.57209 5.81170 35 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00013 9.35365 10.07599 0.61958 0.77255 0.48576 0.95510 15 3.92127 4.67018 2.66116 3.86037 5.69573 4.91894 3.60423 7.68279 2.54816 1.76468 2.50809 3.36403 7.53786 5.03448 2.06745 2.85018 1.61868 2.50147 9.29975 5.41165 36 - E 2.68669 4.42276 2.77571 2.73175 3.46405 2.40564 3.72546 3.29405 2.67792 2.69406 4.24741 2.90398 2.73791 3.18198 2.89852 2.37938 2.77571 2.97555 4.58528 3.61554 0.02672 4.12650 4.58294 0.02478 3.71015 0.48576 0.95510 16 2.18364 3.83026 2.37540 1.92658 5.10133 3.93503 5.01233 4.82491 3.26607 3.88455 7.91025 2.40468 5.84611 2.39066 2.74845 1.54774 2.88334 5.30308 9.30182 5.27448 38 - . 2.69285 4.42892 2.78187 2.71371 3.47021 2.39648 3.73162 3.30021 2.68408 2.70022 4.25357 2.91014 2.73586 3.18813 2.89768 2.37061 2.78187 2.96465 4.59144 3.62170 0.06948 2.70195 10.06576 1.14300 0.38399 0.12672 2.12844 17 3.00879 6.22707 1.14539 2.62113 8.22660 2.32486 5.00007 5.74089 3.37597 6.06227 5.96946 2.20305 3.55621 4.29494 3.64273 1.71924 2.96466 7.27151 9.31196 7.90015 43 - T 2.68683 4.42290 2.77584 2.73188 3.46419 2.40271 3.72559 3.28417 2.67806 2.69420 4.24755 2.90412 2.73804 3.18211 2.89866 2.37952 2.77584 2.98583 4.58542 3.61568 0.02062 3.89408 10.07599 0.01979 3.93259 0.48576 0.95510 18 3.76462 8.93575 3.07006 4.51654 8.28138 0.33434 4.23072 7.76939 4.30394 7.24099 7.97731 2.55247 7.57750 3.02941 4.51733 3.80228 4.92957 7.32690 5.19913 7.95272 45 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00116 9.35365 6.84173 0.61958 0.77255 0.48576 0.95510 19 1.90110 5.71291 2.48377 2.07612 8.22506 3.57076 4.14683 3.14250 2.23576 4.96709 5.72644 3.60750 7.53202 2.98449 2.38168 2.62206 1.93211 3.22896 9.31069 5.09515 46 - E 2.68946 4.44015 2.77787 2.74913 3.48144 2.40036 3.72781 3.24085 2.67626 2.70859 4.26480 2.89249 2.73577 3.16719 2.91591 2.37283 2.79310 2.99053 4.47778 3.59801 0.12833 2.11698 10.07497 1.54130 0.24093 0.37702 1.15805 20 2.68343 4.60106 9.69678 9.18015 5.48132 9.09039 9.64754 2.62773 9.06862 1.20614 3.89280 9.26157 9.33871 9.24165 9.14651 4.10380 7.84349 0.67817 9.99536 8.81678 54 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00013 9.35365 10.07599 0.61958 0.77255 0.48576 0.95510 21 4.21642 6.25210 5.32000 4.95370 3.03157 7.72067 3.12086 3.38964 2.91716 1.51802 3.67559 5.51824 8.08599 4.30201 2.47220 4.00345 3.90102 1.76030 2.40041 1.94580 55 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00013 9.35365 10.07599 0.61958 0.77255 0.48576 0.95510 22 1.69812 1.18977 8.22038 5.23705 5.41605 2.03566 5.83888 4.72537 3.13727 5.52952 4.90257 4.18201 8.06088 7.65767 7.58557 1.88475 2.55001 2.84404 8.60766 7.42328 56 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00013 9.35365 10.07599 0.61958 0.77255 0.48576 0.95510 23 2.83340 3.31886 8.55611 7.93968 2.35503 7.74832 8.08263 4.85505 4.26148 4.53118 3.90878 5.77796 8.11188 5.80673 5.41140 4.53145 2.48132 3.79104 0.52320 3.33451 57 - E 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00013 9.35365 10.07599 0.61958 0.77255 0.48576 0.95510 24 5.47894 3.13736 5.21630 5.11419 10.12876 0.08833 9.32818 9.71465 5.80156 9.29099 10.10574 7.99901 8.72669 8.59684 9.22374 4.73041 7.95976 8.80241 4.41939 10.06969 58 - E 2.68821 4.37599 2.77723 2.72006 3.46557 2.40716 3.72698 3.29557 2.67944 2.69056 4.24893 2.90550 2.73943 3.18350 2.90004 2.38090 2.77344 2.98722 4.58680 3.61706 0.03729 3.30887 10.07599 0.55443 0.85426 0.48576 0.95510 25 3.03299 4.03738 1.72907 3.31099 6.18341 3.80386 4.32851 4.18198 3.54053 2.99801 5.10609 2.43662 7.53531 2.21590 2.64873 1.53476 3.72282 4.10241 3.31807 3.80348 61 - - 2.68909 4.42516 2.77811 2.72452 3.46645 2.40804 3.72786 3.25961 2.68032 2.69646 4.24981 2.90638 2.73062 3.18438 2.90092 2.38178 2.77811 2.98284 4.58768 3.61794 0.07414 2.63926 10.07599 0.24620 1.52220 0.48576 0.95510 26 3.88020 5.59069 2.41939 2.71607 5.38688 2.40061 5.71970 7.71485 6.06227 7.18741 5.33096 0.48563 4.96340 3.34492 5.62389 3.37482 4.07047 7.27290 9.31348 7.90166 64 - - 2.68826 4.42433 2.77067 2.73331 3.46562 2.40720 3.72702 3.29562 2.67948 2.69563 4.24897 2.90554 2.73298 3.18354 2.89247 2.37209 2.77727 2.98726 4.58685 3.61711 0.04106 3.24623 6.64095 0.51343 0.91239 0.48576 0.95510 27 2.77954 5.66988 2.58349 2.43391 4.11037 2.35196 4.60606 5.45237 3.03681 4.22182 7.91866 1.99196 4.73092 3.42299 3.40527 1.53829 2.21379 3.87265 5.12621 3.88427 67 - T 2.68812 4.42419 2.77714 2.72861 3.45609 2.40359 3.72689 3.29548 2.67935 2.69549 4.22824 2.90541 2.73934 3.18341 2.89460 2.37742 2.77503 2.98713 4.58671 3.61697 0.03310 3.42597 10.07473 0.62752 0.76339 0.35852 1.19969 28 2.87988 2.32211 2.07230 3.25560 2.95203 5.01846 3.30205 7.64584 3.66958 3.15249 3.76903 2.84554 7.54402 4.47582 2.95276 1.96886 5.32633 2.65629 3.54699 2.05423 70 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00013 9.35365 10.07599 0.61958 0.77255 0.48576 0.95510 29 4.28657 8.87679 5.12039 4.02933 5.61116 0.14527 5.18429 5.67672 5.02880 5.82560 7.91780 3.61421 7.53624 5.17690 4.28591 4.09129 5.50252 7.26680 9.31011 5.02830 71 - S 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00013 9.35365 10.07599 0.61958 0.77255 0.48576 0.95510 30 3.70439 2.69070 4.58739 3.30140 8.21950 5.34550 5.84340 5.21677 4.64842 4.07572 5.07240 2.93823 7.53431 0.41499 2.83061 4.28809 4.31099 4.27407 9.30852 7.89810 72 - T 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00009 9.35360 * 0.61958 0.77255 0.00000 * //