# STOCKHOLM 1.0
#=GF ID   DUF4133
#=GF AC   PF13571.1
#=GF DE   Domain of unknown function (DUF4133)
#=GF AU   Ellrott K, Bakolitsa C
#=GF SE   Bacteroides thetaiotaomicron: BT_0094
#=GF GA   25.20 25.20;
#=GF TC   25.30 26.00;
#=GF NC   25.00 25.10;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF WK   Domain_of_unknown_function
#=GF RN   [1]
#=GF RM   15790854
#=GF RT   Glycan foraging in vivo by an intestine-adapted bacterial
#=GF RT   symbiont.
#=GF RA   Sonnenburg JL, Xu J, Leip DD, Chen CH et al
#=GF RL   Science 2005 Mar 25;307(5717):1955-9.
#=GF RN   [2]
#=GF RM   16735464
#=GF RT   A hybrid two-component system protein of a prominent human  gut
#=GF RT   symbiont couples glycan sensing in vivo to carbohydrate
#=GF RT   metabolism.
#=GF RA   Sonnenburg ED, Sonnenburg JL, Manchester JK, Hansen EE et al.
#=GF RL   Proc Natl Acad Sci U S A 2006 Jun 6;103(23):8834-9. 
#=GF DR   INTERPRO; IPR025407;
#=GF CC   Based on Bacteroides thetaiotaomicron gene BT_0094, a putative
#=GF CC   uncharacterized protein as seen in gene expression experiments
#=GF CC   (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE2231), It
#=GF CC   appears to be upregulated in the presence of host or vs when in
#=GF CC   culture [1][2].
#=GF SQ   26
#=GS C3R998_9BACE/6-101  AC C3R998.1
#=GS C7X7V9_9PORP/5-100  AC C7X7V9.1
#=GS C3R3U2_9BACE/5-100  AC C3R3U2.1
#=GS C9LIJ6_9BACT/6-101  AC C9LIJ6.1
#=GS B2RGU0_PORG3/6-101  AC B2RGU0.1
#=GS Q8ABL6_BACTN/6-101  AC Q8ABL6.1
#=GS A7V6I3_BACUN/5-100  AC A7V6I3.1
#=GS Q64WL9_BACFR/6-101  AC Q64WL9.1
#=GS B5CY57_9BACE/5-100  AC B5CY57.1
#=GS A7LRP2_BACOV/5-100  AC A7LRP2.1
#=GS A6KY62_BACV8/5-100  AC A6KY62.1
#=GS D4IKH4_9BACT/6-101  AC D4IKH4.1
#=GS D4IL88_9BACT/6-101  AC D4IL88.1
#=GS Q7MUM6_PORGI/4-99   AC Q7MUM6.1
#=GS D1XZT0_9BACT/6-101  AC D1XZT0.1
#=GS D7W823_9FLAO/9-104  AC D7W823.1
#=GS D7W0T5_9FLAO/6-101  AC D7W0T5.1
#=GS C2MEI7_9PORP/5-100  AC C2MEI7.1
#=GS C6W384_DYAFD/9-102  AC C6W384.1
#=GS A5FBP9_FLAJ1/8-101  AC A5FBP9.1
#=GS A5FE13_FLAJ1/8-101  AC A5FE13.1
#=GS B6W538_9BACE/6-101  AC B6W538.1
#=GS B6VX64_9BACE/6-101  AC B6VX64.1
#=GS B3JGC6_9BACE/5-100  AC B3JGC6.1
#=GS A7UXQ3_BACUN/5-100  AC A7UXQ3.1
#=GS B3CHN7_9BACE/7-102  AC B3CHN7.1
C3R998_9BACE/6-101             INKGIGRPVEFKGLKAQYLFLFAGGLLAAFILFIILYMAGAGQWLCIGFGAVSASSLVWLTFRLNAKYGEHGLMKLGAARMRPRHVLHRRRVSNLL
C7X7V9_9PORP/5-100             VNKGVDRGVEFSGLQAQYLYILAGGLLSVFLVFVILYMAGVNRWFCILFGTVSASVLVLAVFRLGRKYGPHGLMKLAAAKYRPFHIINRKRIISLF
C3R3U2_9BACE/5-100             INKGIGRSVEFNGLQAQYLYFFVGGLLAIFLLFVIFYMIGIDRWFCIGFGVLSAFGLVFGMFHLNKKYGPNGLMKLAAVKYHPFYIINRKRISSLF
C9LIJ6_9BACT/6-101             VNKGIGRPVEFKGLKAQYLFIFCGGLLALFVLFVILYMVGIDQWICIGFGAASSSLLVWQTFALNARYGEHGLMKLGASRSHPRYLINRRRITRLF
B2RGU0_PORG3/6-101             INKGIGRSVEFQGLKSQYLFIFAGGLLALFVLFVILYMVGVNQWICIGFGGTSASILVWQTFSLNKKYGEHGLMKRSALHSHPRYLINRRRIPCLL
Q8ABL6_BACTN/6-101             INKGIGKPVEFKGLKSQYLFIFAGGLLALFVLFIIMYMVGINQWVCIIFGVTSATLLVWLTFRLNEKYGTHGLMKLSARKSHPFHIINRKAISRLF
A7V6I3_BACUN/5-100             INKGIGRNVEFKGLESQYLFIFCGGLLAVFVVFVILYMAGVNQWVCIGFGVAAATLLVWLTFRLNARYGTHGLMKAAARRRHPRYVVNRLKIPRLF
Q64WL9_BACFR/6-101             VNRGIGKPVEFKGLKSQYLFIFCGGLLAVFVVFIVLFMAGVNQWLCIGFIVSASLLLVWQTFRLNAKYGTHGLMKAAARKRHPRFIISRKAIPRLF
B5CY57_9BACE/5-100             INKGAGRPIEFKGLKSQYLFFFAGGLVSVFLAVVVLYMAGVSQLVCLSFGAVSGTLAVWLTFRMNARYGEHGLMKMLAEKRHPRYLSARRRIFRAL
A7LRP2_BACOV/5-100             INKGAGNPLEFKGLKSQYLFIFAGGLVAVLLVVVILYIAGVNQWICIPFGLLSGSLLVWLTFRLNARYGEHGLMKLLSGKRHPRYLIHRRRLFRLL
A6KY62_BACV8/5-100             VNKGAGNPVEFKGLKSQYLFVFAGGLAMMLLMVVFLYLTGVDQWICLSFGILSGSLLVWVIFRLNARYGEHGLMKLLAEKRHPRYLIHRKRVFRLF
D4IKH4_9BACT/6-101             IHKGVDAPVEFKGLKSQYLFICAGGLIGSFLLLVILYMSGVGQLTCLFVGGALCGGTVMLTYRLNEKYGTYGLMKALAVKLHPRRITNRRRVQRLI
D4IL88_9BACT/6-101             INKGVGRQVEFKGLRAQYLFLFAGGLLAVFILVVVLYMGGVDQVACLVAGVGLGGALVALTFRLNRKYGAYGLMKLLAARRHPRRIVSRKSVARIL
Q7MUM6_PORGI/4-99              INRGIGRTVEFKGLKSQYLFIFAGGLLATFILVVICYMCGMNQYLCLGMGVSGATLVVWQTFAMNRKYGEHGLMKRGAARRHPRYLLSRRPVRRIL
D1XZT0_9BACT/6-101             INKGVGRTVEFKGLKAQYLFLFAGGLLAVFFLVVVLYLCGIDQIVCLGLGLVGATLVVWQTFAMNRKYGRYGLMKQGAIKMHPRYLLNRRTVFHLI
D7W823_9FLAO/9-104             INKGIGRTVEFKGLKAQYLFIFSGGLLGILICIMVMYMAGVNTYLCLILGGFSSGLLTWQTFALNRKYGEHGLMKLGAHKKHPKYIISRKSIYRYL
D7W0T5_9FLAO/6-101             INKGIGCTVEFKGLKAQYLFGFAGGLLLVLILVMVLYMADVNMYICLSVGCISASLIVWKTFSLNNKYGEHGLMKLGAKRKHPQFIITRKPVQSYL
C2MEI7_9PORP/5-100             VNKGIGATIEFKGLKSQYLVIFACGLGGVFLVAVVLNLVGVPSVLMVGISALLATVLVYTVFKMNKKYGTHGLMKLRAVAKHPDYLIHRRTVRSML
C6W384_DYAFD/9-102             INKGINTSIEFKGLKAQYIWYMGGAAIVLFAIYTLLYICGIRSYICVGIVVCLGIPMIMGIYHLSSAYGEHGVTKMLARRNIPRYVKSNS..RRIF
A5FBP9_FLAJ1/8-101             INKGINQSIEFKGLKAQYIWYLGGGVVGLMILFAALYIIGVPSLLCIGFIGTAGVFLVFKIYRMSNTYGEYGMMKALAKKQIPKWIKVYS..RSVF
A5FE13_FLAJ1/8-101             INKAINKSIEFKGLKAQYIWYLGGGAVSLMIVFAVLYIIGIPSLICVGLIGISGVILVVKIYRMSNTYGEYGMMKALASRQIPKSVKVRS..RSVF
B6W538_9BACE/6-101             INKGIGRSPEFKGLKSQYLFIFAGGLLALFVVFVIMYMAGIGQWVCIGFGVVSALVLVWATFRMNTKYGEWGLMKLQALRSHPRYIINRRKFLRLI
B6VX64_9BACE/6-101             INKGIGRSPEFKGLRSQYLFIFAGGLLAILIAFMVLYMAGVNQWICIALGVISASVLVWATFHLNAKYGEWGLMKMQAAKNHPRYIINRKRFLRLI
B3JGC6_9BACE/5-100             INKGIGKSVEFRGLKAQYLFIFAGGLLAVFVVFVILYMAGVDQWVCIAFGVAAASVLVWLTFRLNTRYGEHGLMKLLAARRHPRYLLNRKSLRRLL
A7UXQ3_BACUN/5-100             LNKGIGKSAEFKGLKAQYLFLFAAGLLAVFVVFIILYMVGINQWICIGFGVVTASVLVWATFALNEKYGEHGLMKLLSSRQHPRFLINRITPRKLF
B3CHN7_9BACE/7-102             LNKGIGESAEFKGLKAQYLFIFVGGLLALFVLFVILYMAGVNQWFCIAFGVISASVLVRLTFHLNGKFGEHGLMKLLARKQHPRYLINRISPRKLF
#=GC seq_cons                  INKGIG+sVEFKGLKuQYLFlFAGGLLAlFllaVlLYMsGVsQalCluFGssouolLVWtTF+LNpKYGEHGLMKhhAt+pHPRYllsR+plh+Lh
//