# STOCKHOLM 1.0
#=GF ID   DUF4134
#=GF AC   PF13572.1
#=GF DE   Domain of unknown function (DUF4134)
#=GF AU   Ellrott K, Bakolitsa C
#=GF SE   Bacteroides thetaiotaomicron: BT_0095
#=GF GA   22.30 22.30;
#=GF TC   22.40 22.40;
#=GF NC   21.60 21.80;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF WK   Domain_of_unknown_function
#=GF RN   [1]
#=GF RM   15790854
#=GF RT   Glycan foraging in vivo by an intestine-adapted bacterial
#=GF RT   symbiont.
#=GF RA   Sonnenburg JL, Xu J, Leip DD, Chen CH et al
#=GF RL   Science 2005 Mar 25;307(5717):1955-9.
#=GF RN   [2]
#=GF RM   16735464
#=GF RT   A hybrid two-component system protein of a prominent human  gut
#=GF RT   symbiont couples glycan sensing in vivo to carbohydrate
#=GF RT   metabolism.
#=GF RA   Sonnenburg ED, Sonnenburg JL, Manchester JK, Hansen EE et al.
#=GF RL   Proc Natl Acad Sci U S A 2006 Jun 6;103(23):8834-9. 
#=GF DR   INTERPRO; IPR025408;
#=GF CC   Based on Bacteroides thetaiotaomicron gene BT_0095, a putative
#=GF CC   uncharacterized protein As seen in gene expression experiments
#=GF CC   (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE2231), It
#=GF CC   appears to be upregulated in the presence of host or vs when in
#=GF CC   culture [1][2].
#=GF SQ   27
#=GS D4IJB0_9BACT/2-97    AC D4IJB0.1
#=GS C9LK21_9BACT/3-100   AC C9LK21.1
#=GS B5CY58_9BACE/34-129  AC B5CY58.1
#=GS Q8ABL5_BACTN/2-97    AC Q8ABL5.1
#=GS D7W824_9FLAO/5-100   AC D7W824.1
#=GS A5FBQ0_FLAJ1/16-110  AC A5FBQ0.1
#=GS C6W383_DYAFD/12-106  AC C6W383.1
#=GS C2MEI8_9PORP/13-111  AC C2MEI8.1
#=GS C2FTU1_9SPHI/2-98    AC C2FTU1.1
#=GS D2QV31_SPILD/12-109  AC D2QV31.1
#=GS D1QR47_9BACT/22-116  AC D1QR47.1
#=GS C6Z2E1_9BACE/22-119  AC C6Z2E1.1
#=GS D1Q0J6_9BACT/22-119  AC D1Q0J6.1
#=GS A7M3U1_BACOV/21-121  AC A7M3U1.1
#=GS C3QWH9_9BACE/21-121  AC C3QWH9.1
#=GS B6W2C7_9BACE/6-106   AC B6W2C7.1
#=GS C3QWI0_9BACE/4-103   AC C3QWI0.1
#=GS C9KSF2_9BACE/4-104   AC C9KSF2.1
#=GS B3JIJ6_9BACE/4-104   AC B3JIJ6.1
#=GS C6INL3_9BACE/4-104   AC C6INL3.1
#=GS D2ET45_9BACE/6-106   AC D2ET45.1
#=GS D7W906_9FLAO/29-123  AC D7W906.1
#=GS D7W5H4_9FLAO/14-109  AC D7W5H4.1
#=GS C2FTU0_9SPHI/6-100   AC C2FTU0.1
#=GS B3C655_9BACE/9-102   AC B3C655.1
#=GS B0NMQ1_BACSE/3-98    AC B0NMQ1.1
#=GS A7UXQ2_BACUN/29-124  AC A7UXQ2.1
D4IJB0_9BACT/2-97               KKRAIFMIFSLCSALA..CFAQGNGMAGISE...ATNMVTSYFDPLTKLIFAVAAILGLVGGVRVYSKFSSGDPDASKSATALFLSCVFLVIVGTVLRSFF
C9LK21_9BACT/3-100              NKKKIMMLLSLLTATAVGAYAQGNGMAGINE...ATKMVTSYFDPGTKLIYAIGAVVGLIGGIKVYNKFSSGDPDTSKTAASWFGACIFLIVAATILRSFF
B5CY58_9BACE/34-129             KRRILFSVLCVLAAAG..AFAQGQGLAGINE...ATSLMTSYFDPATKLCYAIGAVLGLVGGIKTYGKFSSGDPDTSKTAASWFFACIFLIVAATILRSFF
Q8ABL5_BACTN/2-97               KKKVLFSAVALLAASA..TFAQGNGMAGITE...ATNMVTSYFDPATKLIYAIGAVVGLIGGVKVYGKFSSGDPDTSKTAASWFGACIFLIVAATILRSFF
D7W824_9FLAO/5-100              RKKLLYAILTFVTINL..VFGQGNGSAGINE...ATQMVTSYFEPATQLIYAIGAVVGLIGGVKVYNKFSSGDPDTSKTAASWFGACIFLIVAATILRSFF
A5FBQ0_FLAJ1/16-110             FRVMGSSLLMILVSNV..IYSQ.DGVAGINE...ANQKVRSYFDAGTELMYAVGAILGLIGAVKVYQKWNAGDPDTGKVAAAWFGSCVFLVVVATVIKSFF
C6W383_DYAFD/12-106             AKQVWASALLAVVASV..VKAQ.DGAAGISE...ADSQVRSYFEPGTQLMYAIGAVLGLVGAVKVFQKWNAGDNDTGKVAAAWFGSCIFLVVVATVLQSFF
C2MEI8_9PORP/13-111             VKLFFAPILYLLTTTT..LSAEKSATSGVGAFEGAARSLTAYFDPLVNLIYIIGAVVGLIGAIKVYQKFSQGDPDTGKTAASWFGACIFLVISASVLKAFF
C2FTU1_9SPHI/2-98               QSIRFLTVFLTVIFFALYATAQ....PGLAEFREVRREVNTWYYNFSDLAFVIGAVCGLLGGLRVYSNWQSGKHHIDAQVMGWFFSCLFLSLVGAALKALF
D2QV31_SPILD/12-109             NAAQLIALIVAGVLVAHIAPAQGLSTQGLST...AATQVRGAFTIVTNLMYAVCAIIGIVGAISVYSKWTNGEADTKKAAASWFGALIFAGLVVVTLSAVF
D1QR47_9BACT/22-116             VRRYCALFVLGFVYG...MQAFAQGAGGFSK...ATQEISTYSGPVQKLMYAIAAVIALVGAFNVYFKMQNGDQDVKKTIMMTIGGCVAMVAMSTALPLFF
C6Z2E1_9BACE/22-119             FGRRVAIALGTFTFAVSEAMAGSKGAAGFTK...ATQEISSYETPVSNLMKAIAAVIVLVGAFNVYFKMQNGDQDVKKTIMLTIGGCVAFIALSEALPLFF
D1Q0J6_9BACT/22-119             QSLKLAVSVGMFAMSTGTMLANSKGAGGFSK...ATTEISSYQTPVSNLMKAIAAVIVLVGAFNVYFKMQNGDQDVKKTIMLTIGGCVAFIAMSEALPLFF
A7M3U1_BACOV/21-121             TKVMMFSFMLLSGMVAKAQNSAGDYSAGTSALSTVADEIAKYVPIMVKLCYAIAGVVAIVGAISVYIAMNNEEQDVKKKIMMVVGACIFLIAAAKALPLFF
C3QWH9_9BACE/21-121             TKVRMLIIALLGGIPAMAQSTAGDYSAGTTALSTVAEEIVKYVPVMVKLCYAIAGVVAIIGAISVYIAMNNEEQDVKKKIMMVVGACLFLIAAAQALPLFF
B6W2C7_9BACE/6-106              RSAFLSLYAALTPALASAKCGNVDYSWGADALASAHDYAVTMMLYIVYLCYAVAGIVVIVSALQIYIKMNTGEEGVKKNIMMLVGACLFLIGATIVFPAFF
C3QWI0_9BACE/4-103              AKKILCALC.FVPYAAFAKSGSVNYSWGADALATMHDFVVTMMLYVLYICYAVASVFVVVAALQIYIKMNTGEDGVVKSIVSLVGACLFIIGASIVFPAFF
C9KSF2_9BACE/4-104              TKYILCALCSILSCPAFAKSGSVNYSWGADALASMHDFVVTMMLYVLYFCYAVATILAIVSALQIYIKMNTGEDGITKSIVALFGACLFIIGASIVFPAFF
B3JIJ6_9BACE/4-104              TKKILCALCSIIPCSALAKSGSVNYSWGADALATMHDYVVTMMFYVQALCCAIAGICVIVSGFQIYVKMNTGEDGITKSVVTLVGACLFLIGAFLVFPAFF
C6INL3_9BACE/4-104              AKKILCALCLPFPYTTFAKSGSVNYSWGADALATMHDFVVTMMLYVQYICCAIAGVYVIVSVCQIYIKMNTGEDGITKSIMTLVGACLFLIGAFYVFPVFF
D2ET45_9BACE/6-106              SKRITSILCMLLPYSAFAKSGSVNYSWGADALASMHDYVVTMMLYVQYIIYAVAGVFVIISVFQIYIKMTAGDEGITKQILTLVGACLFIVGATFVFPAFF
D7W906_9FLAO/29-123             FKKLLTACVILLAVTP..AFAQ.GGATAISN...AANDIKDYWDPIKLILKAVGGLVGFIGGLRVYNKWTNGDQDVNKEILGYGGAMIFLLVVPEFVTAFF
D7W5H4_9FLAO/14-109             IKKALFSAILVLCTNL..LFAQTGGAGAISS...ATSDIEEYVEPVSNLVQMIGAIVGIVGGVRIYNKWNNGDQDVNKELIGWGGACIFLLLVPTVIQAFF
C2FTU0_9SPHI/6-100              KKLFAVAALSLSAVQS..TFAQ.GGTVGIDA...ATSSLTSYVDPISTLILAIGAVVGLIGGIRVYIKWNSGDQDINKELMSWGGSCLFLVLVSVVIKAFF
B3C655_9BACE/9-102              AQRAFALAISIMVVTN..TFAQ..GAAGIDA...ASSELATYMDPLGNMMMILGGLVGLVGAVRVYLKWNSGDQDVQKAVMGWMGSCIFLVVSGVVVKAFF
B0NMQ1_BACSE/3-98               TKQLVLVAVMLIATGS..LHAQGNGSAGIAE...ATKMVTSYFDPGTKLCYAIGAVIGLVGGIKVYNKFSSGDPDVSKVASSWFGACIFLIVAATILRSFF
A7UXQ2_BACUN/29-124             KKFLLAAAALFVAVGA..TYAQGNGQAGITE...ATNLITGYFDPGTKLVYAIGAVCGLIGGVKVYNKFSSGDPDTSKVAASWFGACIFLIVAATILRSFF
#=GC seq_cons                   pKthlhshhhlhshss..thApssuuuGhst...Ass.lsoYhsssspLhYAIuAVlullGulpVY.KhssGDpDlsKshhuhhGAClFLlssupll.uFF
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