# STOCKHOLM 1.0 #=GF ID DDE_Tnp_1_2 #=GF AC PF13586.1 #=GF DE Transposase DDE domain #=GF AU Coggill P #=GF SE Jackhmmer:C2M1K3 #=GF GA 27.00 27.00; #=GF TC 27.00 27.00; #=GF NC 26.90 26.90; #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq #=GF TP Domain #=GF CC Transposase proteins are necessary for efficient DNA #=GF CC transposition. This domain is a member of the DDE superfamily, #=GF CC which contain three carboxylate residues that are believed to be #=GF CC responsible for coordinating metal ions needed for catalysis. #=GF SQ 38 #=GS B8II47_METNO/36-120 AC B8II47.1 #=GS C2FHG9_LACPA/199-289 AC C2FHG9.1 #=GS B6FVQ2_9CLOT/389-478 AC B6FVQ2.1 #=GS C4G6V5_ABIDE/359-448 AC C4G6V5.1 #=GS C4GDJ6_9FIRM/358-447 AC C4GDJ6.1 #=GS C6J2Z6_9BACL/429-520 AC C6J2Z6.1 #=GS B8FTV1_DESHD/393-484 AC B8FTV1.1 #=GS A5D5B5_PELTS/375-464 AC A5D5B5.1 #=GS B4VW05_9CYAN/103-193 AC B4VW05.1 #=GS A0ZLG9_NODSP/90-180 AC A0ZLG9.1 #=GS B0JMQ8_MICAN/82-172 AC B0JMQ8.1 #=GS B0C0G8_ACAM1/371-463 AC B0C0G8.1 #=GS B3EJB1_CHLPB/365-457 AC B3EJB1.1 #=GS A3INL4_9CHRO/364-454 AC A3INL4.1 #=GS B0JVK3_MICAN/8-98 AC B0JVK3.1 #=GS B7JV89_CYAP8/364-454 AC B7JV89.1 #=GS A3IIX3_9CHRO/303-393 AC A3IIX3.1 #=GS A6DRS1_9BACT/139-231 AC A6DRS1.1 #=GS Q0RXP8_RHOSR/95-191 AC Q0RXP8.1 #=GS A9AV24_HERA2/20-109 AC A9AV24.1 #=GS A3TY87_9RHOB/6-91 AC A3TY87.1 #=GS Q983Q5_RHILO/16-101 AC Q983Q5.1 #=GS D1Y371_9BACT/68-154 AC D1Y371.1 #=GS C7LCN0_BRUMC/44-131 AC C7LCN0.1 #=GS Q3ST40_NITWN/8-75 AC Q3ST40.1 #=GS C2M1K3_CAPGI/42-129 AC C2M1K3.1 #=GS Q82T99_NITEU/1-86 AC Q82T99.1 #=GS Q72U81_LEPIC/6-90 AC Q72U81.1 #=GS D3D3K5_9ACTO/4-80 AC D3D3K5.1 #=GS B5RYR2_RALSL/42-122 AC B5RYR2.1 #=GS A4X8W7_SALTO/26-107 AC A4X8W7.1 #=GS D2AYF2_STRRD/179-258 AC D2AYF2.1 #=GS Q10VD5_TRIEI/82-176 AC Q10VD5.1 #=GS B4WK66_9SYNE/47-141 AC B4WK66.1 #=GS Q3BRS8_XANC5/4-85 AC Q3BRS8.1 #=GS D7DW69_NOSA0/62-142 AC D7DW69.1 #=GS B5HUX9_9ACTO/135-216 AC B5HUX9.1 #=GS A4BU62_9GAMM/4-83 AC A4BU62.1 B8II47_METNO/36-120 VAVDRGYTSYRFRLHLWRL..EA..RAAIPPQHHEA............PVACLRRIDINSSRVDRLWARLKER.RAMATRYEKTASSFLRV..ICLTATIDWLK C2FHG9_LACPA/199-289 ILADTLYRTRENRQLCQRL..GI..RLSGPRLGRKPK......KMDAKQRQVDRDAEKRRGKIERGFAFMKGP.LGLSLVRTKTVASIAVT..IDIAINLANLK B6FVQ2_9CLOT/389-478 VLADQIYRTRENRSYCKEH..GI..RLSGPKLGRPSA.......TAKVDKKQEYQDNTDRIEVERTFSLSKRC.YGMSCITTKLEETQLTS..IALSVFVTNLF C4G6V5_ABIDE/359-448 VLVDKIYRNRINRDFCKKK..EI..RMSGPALGRPKQ.......KDISDKKQEHRDNANRIAVERAFALAKHS.YGLGLLVTKLDKTTRNS..IALSFIAMNVD C4GDJ6_9FIRM/358-447 ALVDKIYRNRKNLSYCRLH..GI..KLSGPALGRPKK.......DPSIDRKQEYRDAVDRIEVERSFSLAKRC.FGLGLIRTKLDTTTRSS..IVLSIIAMNVD C6J2Z6_9BACL/429-520 VQADQIYRTRENRRFCKQH..GI..RLSGPALGRKPK.....NGPTSEDRQVAKQDTGERNAIEGKFGEGKRK.YGLGCIRARLAKTSESV..ITLQLLVMNLE B8FTV1_DESHD/393-484 VLADRIYRNRNNLAYCKKH..TI..RLSGPKLGRPSG.....EALKKIEKQLQRMDAKLRNAVEGKFGEGKRN.YGLNRIYAKLKETAECM..ISMQFFIMNLE A5D5B5_PELTS/375-464 VLADQLYRTRENLSFCRKH..GI..RLSGPPLGRPLL.......DGRQEKKIARQDMRERNAIEGGFGVCKRR.YGLARIMARLKETAESV..IALQFLVMNLE B4VW05_9CYAN/103-193 VHVDKIYRSRANRSFCKEK..GI..RISGPPLGRPKA......NVSQELKKQAQEDERIRNNIEGKFGISKRR.YSLSRVMAKLPHTSETA..IAITFLVMNLS A0ZLG9_NODSP/90-180 VHVDKIYRTRENRAWCKER..GI..RISGPPLGIPPK......NVSPEKKKQALEDERIRNSIEGKFGQGKRR.FSLGRVMAQLPHTSLTS..IALTFLVMNLS B0JMQ8_MICAN/82-172 VHVDKIYRTRENRAWCKER..GI..RISGPPLGRPAK......NVSKEQKKQATDDERIRNCIEGKFGQGKRR.FSLGKVMAKLPHTSFSA..IAITFLVMNLS B0C0G8_ACAM1/371-463 VHADQIYRTRANRRWCKAR..GI..RLSGPPLGRPQQ....DPQVQTQLKQQACEDEKVRVQIEGKFGQAKRR.FGLNRVMAKLADTAASA..IAITFLVMNLE B3EJB1_CHLPB/365-457 VHADKIYRTQANRRWCKER..EI..RLSGVPLGRPPK....DVEKNRARRRQIREDEGIRNAVEGKFGQAKRR.YSLNRVMARLAESSLSV..VSITFLVMNLD A3INL4_9CHRO/364-454 VHADRIYRSKANKDWCKQR..GI..RLSGIGLGRPPK......NISQEEKRQTKIDEGFRNRIEGKFGQAKRK.FSLDLVKTKLKETSETA..IAITFLVINLS B0JVK3_MICAN/8-98 VHVDKIYRTRENLAWCKER..GI..RLSGLPLGRPPK......NRRAEIKKQAQEDESFRNAIEGKFGQAKRR.FGLNLCMTKLPETSETS..IALTFLVVNLS B7JV89_CYAP8/364-454 VHVDRIYRTRENRAWCKAR..GI..RISGPQLGRPPK......NISKQEKKQALDDECFRNAIEGKFGQAKRR.FSLKLVMTKLPETSETS..IAITFLVVNLG A3IIX3_9CHRO/303-393 VHVDKIYRTRENRNWCKER..GI..RISGPKLGRPPK......NVSEEEKKQARSDESFRNAIEGKFGQAKSS.FSLNLVMTKLPETSETS..IAITFLVVNLS A6DRS1_9BACT/139-231 THADKIYRNKENRAHCKKH..GI..RISGPSLGRPPK....DEKLRKEQKDIQRQDEAIRNQVEGCFGVAKRR.YKLDRIFTKIKASSETL..IALIFMVMNLD Q0RXP8_RHOSR/95-191 SGARKAYSSRVHRDLLRRR..GI..GAVNAKPDDPAGHRRRRGSRGGRPPAFDRDDYRGRNVVERRFCYLKQS.RGLATRYDELAIVYRAA..VVLNAVIAWTQ A9AV24_HERA2/20-109 LSGDRSYDARRIVHWLQQY..GI..RSVIPPRRRCGM.......RKAGPVGYDAAAYRALNVVEGTIVCLKEC.RSVATWFEKLALNDRGF..VHLAMIQRVVR A3TY87_9RHOB/6-91 PSNHQGYNAARIRDWAEAR..DA..LPVFPMHPNCKA...........REGVDRTHYPLRNLAERCFGRLTKN.HRVATRYVKTAPSFLGF..VDMACIRSWIR Q983Q5_RHILO/16-101 VRADKGCHANALRNAATER..RA..WANIPPKANRKD...........PICFSAFLYKARNLVERFFNKAKQF.RRIATRYDKLAENYLAA..LKLVSVRIWLR D1Y371_9BACT/68-154 IISDKAYGSQAFRECITSQ..EA..GYTIPPKRNNPE...........PWYRDYHVYKVRYLVGCSFQTENQMVHRILSRYDKLDASFFAF..ILVVVIVILVK C7LCN0_BRUMC/44-131 VIADAAHDADHLRAFIASD......LMATAQIQGQSN.......TFQCPNNRLEAVQGTPSMIECFFNKLKRY.RRIALRCEKTLTAFMGF..VHLACAMIWLR Q3ST40_NITWN/8-75 MGAEAVIPSNRTRKIIIPH.................................DAGLYKHRNRIERCFNRLKHF.RRFATRYDRRTVHFTGF..VHLAAALIWLP C2M1K3_CAPGI/42-129 LNADAGFDSKSLREFLESK..EI..IANIKPNPRNGE.........QPDVYFDEELYKNRFKIEQANGWLDRY.KGLIMRYEYLDVTWIGM..LLLGFISKFLK Q82T99_NITEU/1-86 MCRCRLHWCSHTLESIEEH..GC..TAHVKGRGQQAK...........EKRRHPGAHARRWIIEVSHGWFNCL.RKLLMRYEKLARSFLGL..NHLAAAIIAFR Q72U81_LEPIC/6-90 LSLDKSYANNTIKNKLKKR..NIQYRTPNKKNVRNSK..............WIAPLNPFRWTIERIATWFNAF.RAIKTCWEFKFENYTAL..FQIAFTIILIR D3D3K5_9ACTO/4-80 LRADKAYDSDDLRRFLRDR..GVVPRIARKGIESSEK..................LGRHRWTI....AWLGGY.RRLTIRYERNGHNFLGF..LTLAATLACWK B5RYR2_RALSL/42-122 RHADKGYGFARYRQPLRKR..GIEPRIARRGIESPAR..................LGRHRWGIKRTHAWLAAF.GRLRMRFERRIDIHMAL..LGPACAVMCSR A4X8W7_SALTO/26-107 AHLDRGYDSHRTRELLNEI..NFDAQIARRSGPAPVQ...................VGKRWVVERTSSWMNGF.GKIRRCTDCNTKLIDFYLCLYLAAAIVTVR D2AYF2_STRRD/179-258 VNLDRGYDSDKTRSALGEL..GFTGEIARKGIPAPIQ...................AGKRWVVERSHAWMNGF.GKLRRCTEKRSRVVDFY..LYLSAAIVTLR Q10VD5_TRIEI/82-176 ILLDHGYHPDHLREELEKIYPQIMRKIKFELSTKPSK......QEKAAQGKSGFVPAIARWVIERSNSWMERC.KILVKNFERTLSNATTK..LNLCFVRLMIK B4WK66_9SYNE/47-141 LLLDNGYHLDKLKKILEAVYPGIMQKIRFELSPKPSK......AEKSAQGKSGFVPVATRWVIERSNAWMERC.KSLTKNFERTLLNAKAQ..MDFCFGRLMLK Q3BRS8_XANC5/4-85 AFVDQGHTGEGPAEAADAE..GI..ELHVGKLPEAKK...............GFMLLPRRWVVECSFGWVNRF.QRLAGNYEGLPETLAGL..HFGVFSILMLG D7DW69_NOSA0/62-142 LWVDSGYDGDKFALAVWFL...I..QAHVEVIGPTEQ...............EFKVLPQPWVVERTFGWFNQY.HRLSKDYERLTQIREGA..IYAVMTRIMLL B5HUX9_9ACTO/135-216 VRADRAYAGKLVSWAKQHL......NLTIKTVSRPKD.............TTGCVVLPRRWVVERSLAWIMHA.RRRARDYERLVQHSEML..STWAAITLMTR A4BU62_9GAMM/4-83 FSDDAGYRGTAVGFVENTL..GL..KRHIAQKIKDTF.................AVLPMRWIGERTFAWLGNY.RRLSKDYEILPLSAENR..VRIAMLRLMLA #=GC seq_cons lpsD+hYcsccsRphhcc+..GI..+lusssls+ssp............hp.tttstttR.slEtpFuhhK+t.hpLsphhs+Lspottsh..lslshhlhsLc //