# STOCKHOLM 1.0 #=GF ID PepSY_TM_3 #=GF AC PF13706.1 #=GF DE PepSY-associated TM helix #=GF AU Coggill P #=GF SE Jackhmmer:D2BX46 #=GF GA 29.10 29.10; #=GF TC 29.10 29.10; #=GF NC 29.00 29.00; #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq #=GF TP Domain #=GF CC This family represents a conserved TM helix found in bacteria #=GF CC and archaea. #=GF SQ 99 #=GS D0TCC2_9BACE/5-43 AC D0TCC2.1 #=GS A7V5Q6_BACUN/5-40 AC A7V5Q6.1 #=GS A1K811_AZOSB/4-40 AC A1K811.1 #=GS Q2J3Z7_RHOP2/9-47 AC Q2J3Z7.1 #=GS Q6NCR3_RHOPA/9-50 AC Q6NCR3.1 #=GS B8IM61_METNO/8-46 AC B8IM61.1 #=GS C7CF18_METED/9-47 AC C7CF18.1 #=GS B1ZH11_METPB/9-47 AC B1ZH11.1 #=GS A1WS27_VEREI/4-42 AC A1WS27.1 #=GS A9C026_DELAS/6-44 AC A9C026.1 #=GS Q7WMU5_BORBR/9-47 AC Q7WMU5.1 #=GS A6SU08_JANMA/8-46 AC A6SU08.1 #=GS D0IXV7_COMT2/8-43 AC D0IXV7.1 #=GS B4SMD6_STRM5/8-46 AC B4SMD6.1 #=GS A6UYP6_PSEA7/2-40 AC A6UYP6.1 #=GS B1LYP3_METRJ/12-47 AC B1LYP3.1 #=GS B0SYH8_CAUSK/5-40 AC B0SYH8.1 #=GS Q13J71_BURXL/18-54 AC Q13J71.1 #=GS A5P6Z6_9SPHN/7-42 AC A5P6Z6.1 #=GS A6H0H8_FLAPJ/19-56 AC A6H0H8.1 #=GS B8E5S1_SHEB2/17-55 AC B8E5S1.1 #=GS Q0HZS7_SHESR/19-57 AC Q0HZS7.1 #=GS B1KF73_SHEWM/4-39 AC B1KF73.1 #=GS A3XMS3_LEEBM/7-42 AC A3XMS3.1 #=GS D2QVD5_SPILD/6-41 AC D2QVD5.1 #=GS A4A7U0_9GAMM/18-53 AC A4A7U0.1 #=GS A4CGV0_ROBBH/7-42 AC A4CGV0.1 #=GS A3UKQ2_9RHOB/4-39 AC A3UKQ2.1 #=GS B4RHK7_PHEZH/2-37 AC B4RHK7.1 #=GS Q0AT87_MARMM/5-40 AC Q0AT87.1 #=GS C6XP23_HIRBI/2-38 AC C6XP23.1 #=GS B0RF08_CLAMS/30-66 AC B0RF08.1 #=GS A1WTG9_HALHL/6-42 AC A1WTG9.1 #=GS B6IR18_RHOCS/7-43 AC B6IR18.1 #=GS Q21GV2_SACD2/2-38 AC Q21GV2.1 #=GS E6VIB8_RHOPX/14-50 AC E6VIB8.1 #=GS A3WDP4_9SPHN/4-40 AC A3WDP4.1 #=GS B2J111_NOSP7/7-43 AC B2J111.1 #=GS Q7NNR8_GLOVI/4-40 AC Q7NNR8.1 #=GS Q60A44_METCA/9-45 AC Q60A44.1 #=GS D0J2X7_COMT2/5-41 AC D0J2X7.1 #=GS C5CR94_VARPS/7-43 AC C5CR94.1 #=GS A6G0Z1_9DELT/13-49 AC A6G0Z1.1 #=GS D3P0X5_AZOS1/7-43 AC D3P0X5.1 #=GS A8EWA5_ARCB4/10-46 AC A8EWA5.1 #=GS A8EX48_ARCB4/15-51 AC A8EX48.1 #=GS A8EVX2_ARCB4/15-51 AC A8EVX2.1 #=GS Q7MSB9_WOLSU/11-47 AC Q7MSB9.1 #=GS A4LIE3_BURPE/6-42 AC A4LIE3.1 #=GS Q2RW47_RHORT/6-42 AC Q2RW47.1 #=GS C7R700_KANKD/22-58 AC C7R700.1 #=GS B8CT22_SHEPW/14-50 AC B8CT22.1 #=GS B1KKF5_SHEWM/6-42 AC B1KKF5.1 #=GS A9FNL4_SORC5/10-46 AC A9FNL4.1 #=GS C8N9S3_9GAMM/8-44 AC C8N9S3.1 #=GS D0RXW9_ACICA/8-44 AC D0RXW9.1 #=GS B8LBC8_9GAMM/8-44 AC B8LBC8.1 #=GS C7JI01_ACEP3/8-44 AC C7JI01.1 #=GS Q5FT79_GLUOX/8-44 AC Q5FT79.1 #=GS Q12RL8_SHEDO/8-44 AC Q12RL8.1 #=GS B8CH09_SHEPW/8-44 AC B8CH09.1 #=GS Q0HN36_SHESM/8-44 AC Q0HN36.1 #=GS A4C3B5_9GAMM/8-44 AC A4C3B5.1 #=GS A3XL45_LEEBM/6-42 AC A3XL45.1 #=GS C6VZF2_DYAFD/6-42 AC C6VZF2.1 #=GS C6M2E2_NEISI/8-44 AC C6M2E2.1 #=GS D0C7J5_ACIBA/4-40 AC D0C7J5.1 #=GS C6RPP4_ACIRA/4-40 AC C6RPP4.1 #=GS A0Y2T0_9GAMM/6-42 AC A0Y2T0.1 #=GS B4X345_9GAMM/6-42 AC B4X345.1 #=GS D0S9L6_ACIJO/6-42 AC D0S9L6.1 #=GS D0C488_9GAMM/6-42 AC D0C488.1 #=GS C6RJJ5_ACIRA/6-42 AC C6RJJ5.1 #=GS B1M776_METRJ/8-44 AC B1M776.1 #=GS B9KVQ3_RHOSK/6-42 AC B9KVQ3.1 #=GS B5JSN4_9GAMM/6-42 AC B5JSN4.1 #=GS Q15P87_PSEA6/6-42 AC Q15P87.1 #=GS Q0BS45_GRABC/6-42 AC Q0BS45.1 #=GS B1J5Z5_PSEPW/6-42 AC B1J5Z5.1 #=GS A9KV28_SHEB9/6-42 AC A9KV28.1 #=GS Q0K0L2_CUPNH/23-59 AC Q0K0L2.1 #=GS F0Q8R5_ACIAP/12-48 AC F0Q8R5.1 #=GS A6GSF3_9BURK/10-46 AC A6GSF3.1 #=GS Q1NHY2_9SPHN/14-50 AC Q1NHY2.1 #=GS C1DRW8_AZOVD/8-44 AC C1DRW8.1 #=GS A9BZL0_DELAS/20-56 AC A9BZL0.1 #=GS Q4UZ83_XANC8/6-42 AC Q4UZ83.1 #=GS Q2KXM1_BORA1/6-42 AC Q2KXM1.1 #=GS B7WWN8_COMTE/12-48 AC B7WWN8.1 #=GS A9IIV4_BORPD/14-50 AC A9IIV4.1 #=GS B1J398_PSEPW/6-42 AC B1J398.1 #=GS D0SWS0_ACILW/11-47 AC D0SWS0.1 #=GS Q213N2_RHOPB/13-49 AC Q213N2.1 #=GS A6V581_PSEA7/7-43 AC A6V581.1 #=GS Q2RRQ1_RHORT/11-47 AC Q2RRQ1.1 #=GS D5VK26_CAUST/29-65 AC D5VK26.1 #=GS B0T0F6_CAUSK/33-69 AC B0T0F6.1 #=GS A3UDT1_9RHOB/18-54 AC A3UDT1.1 #=GS Q15Z43_PSEA6/19-55 AC Q15Z43.1 D0TCC2_9BACE/5-43 TKIMQFIHRILGTALSILFLVWFLSGLVMIY.....HTFPR..ADR A7V5Q6_BACUN/5-40 TKLMYSIHRILGTLLCILFLMWFLSAFVMMY.....HR.....FPR A1K811_AZOSB/4-40 KRLLFFTHRWLGVALALLMLLWFVSGLVIVY.....AP..N..TVQ Q2J3Z7_RHOP2/9-47 KRWLYLGHRWLGIACCLLFAIWFISGVVMMYV...AFP..Q..FDA Q6NCR3_RHOPA/9-50 KRWLYLGHRWLGIAGCLLFAMWFISGVVMMYVAFPHYD..K..EER B8IM61_METNO/8-46 KRWLHLGHRWLGIAAGLFFAVWFVSGLVMLFV...GFP..A..LTE C7CF18_METED/9-47 KRWLYLGHRWLGIVTCLLFAIWFVSGVVMMYV...GFP..A..LSD B1ZH11_METPB/9-47 KRWLYLTHRWLGIVTCLLFMTWFASGLVMMYV...GFP..S..LTE A1WS27_VEREI/4-42 KRWLFLIHRWLGVVLCAFFAMWFVSGVVMMYV...GYP..K..LTE A9C026_DELAS/6-44 KRWLFLLHRWLGIAVCLFFALWFVSGMVMIYV...GYP..K..LTE Q7WMU5_BORBR/9-47 KRWLYLLHRWMGVGLCLLFVLWFASGVVMMYV...GYP..K..LTP A6SU08_JANMA/8-46 KRLTYLFHRWTGVAACVLMALWFISGIVMLFV...GYP..K..LTP D0IXV7_COMT2/8-43 KRLVFLVHRWTGVGACVLMALWLFSGVVMLF.....VG.....YPK B4SMD6_STRM5/8-46 KRWTYLVHRWLGIGGCLLMLLWFVSGLVMLFI...GYP..K..LTP A6UYP6_PSEA7/2-40 KRYLYLWHRWLGIGCCLLMVLWFVSGMVMLYV...GYP..K..LTP B1LYP3_METRJ/12-47 RRWLLLFHRWAGIVAGLFFALWIGSGLVMLY.....VP.....FPA B0SYH8_CAUSK/5-40 LRWLSWFHRWTGVGLCLLFFLWFASGAVLLF.....VP.....FPS Q13J71_BURXL/18-54 LRALVIGHRWVGILLCLFFAMWFASGAVMMF.....VP..Y..PFL A5P6Z6_9SPHN/7-42 MQRFAKWHIWLGWLVGVPILMWTVTGLVMVI.....KP.....IEE A6H0H8_FLAPJ/19-56 KQNMYRWHRILGLITLVPVIFWTLSGIMHPF....MAH..F..FKR B8E5S1_SHEB2/17-55 KRWVKIAHYWLGAIVSIQLLLWLVTGVYFNLT...PHD..E..LKG Q0HZS7_SHESR/19-57 GLILQTLHKWLGLIVGLQLLIWIVTGLAFNL.....ID..EQFLDA B1KF73_SHEWM/4-39 LKISRKYHRYLMLFLGVQFVIWTVSGAYMVI.....ID.....IDY A3XMS3_LEEBM/7-42 RKQLRKAHRYLGLFIGIQFILWTVSGLYFSW.....TD.....IDE D2QVD5_SPILD/6-41 HLRIRKTHRYLGLFIGVQFLLWTVGGLYFSW.....SN.....LND A4A7U0_9GAMM/18-53 HFYVRKAHRWISIFVGVQLLMWTASGLYFSW.....TD.....IDE A4CGV0_ROBBH/7-42 AKWIRKTHRYLGLFLGIQFLIWTISGMYFSW.....TD.....IDE A3UKQ2_9RHOB/4-39 LRTAVRVHKWLALIIGVQVLLWILGGLVMSV.....LP.....IER B4RHK7_PHEZH/2-37 LRWSTQIHKWLALVVGLQVLGWVLGGLVMTA.....IP.....IET Q0AT87_MARMM/5-40 LRWTIRVHKWIALIVGIQIILWVAGGVVMTV.....L...S..IES C6XP23_HIRBI/2-38 LKWVMKAHRWMSLIFAGFWLLQAVTGTLISF.....RG..N..IDD B0RF08_CLAMS/30-66 LPLLLRLHFLAGILVGPFILTAALSGAAYAL.....AP..T..AEQ A1WTG9_HALHL/6-42 RRLLLCLHRWITLALAPLFLVIILSGGLLAL.....EP..V..VRD B6IR18_RHOCS/7-43 KSILLIAHRWVALILTPLFVLIILSGAVLAV.....KP..I..LEA Q21GV2_SACD2/2-38 KKFLITLHRWLGVPLGLLFIVTFGTGCLTAV.....DE..L..LHR E6VIB8_RHOPX/14-50 RRIWRMLHLSLALTVGAAFALIGASGAMLVL.....KE..P..LLT A3WDP4_9SPHN/4-40 KRLFRQVHYWLSLAVFVPAAIMFGAGGFLML.....KK..E..IEW B2J111_NOSP7/7-43 RHLTFILHRILGFAIGLIAIPLSLTGSLIVF.....QH..E..INE Q7NNR8_GLOVI/4-40 HRLLFHLHRVTGLLAGILIAILGLTGSSIVF.....WK..E..LDH Q60A44_METCA/9-45 RKRWLRIHSTLALSVGFLFVLTGLTGSLNLV.....GP..E..LDR D0J2X7_COMT2/5-41 RSLWLRLHRWFALGLGWILILAGLTGTLLII.....GQ..P..LDR C5CR94_VARPS/7-43 RRLWLKIHRWIGLSLGPVLALTALLGAVLVV.....AL..P..IDR A6G0Z1_9DELT/13-49 RPRLYRLHRWIGLVVAVVGTLVFFSGVLATF.....AS..E..IDA D3P0X5_AZOS1/7-43 SARLLSIHRLISLVFCLLISWSLWTGILAFY.....AD..F..LRP A8EWA5_ARCB4/10-46 KQRLFALHIAAGITFSIIMYLAIFFGIFAIF.....LP..Y..IQN A8EX48_ARCB4/15-51 NQRLQRVHIALGISFSFLMYTALFFGIFAIM.....LP..Y..IEN A8EVX2_ARCB4/15-51 NQRLQRVHVTTGISFSLLMYVAVFFGIFAIL.....LP..Y..IQV Q7MSB9_WOLSU/11-47 RQRLQRVHVTTGIAVSLFMYVAVFFGIWAIW.....LP..Y..VQT A4LIE3_BURPE/6-42 RSRWRAVHRGAGALFGIVLFVILFTGTWSLA.....QE..S..MQG Q2RW47_RHORT/6-42 RRLLAEVHGGAGAVLGVLLFVVLFSGCWSLG.....AE..A..LQT C7R700_KANKD/22-58 IQNFTRVHRQVGILFMPLLLIIVITGGWSLF.....RA..E..LME B8CT22_SHEPW/14-50 IKNLTESHSWIGVIISPLLFLIFWAGAVTLF.....YE..E..VKQ B1KKF5_SHEWM/6-42 LKRITEAHSWLGLIISGLLFIVFFTGSISLF.....RN..E..IAF A9FNL4_SORC5/10-46 FTTFWSVHAWAGVIGGLLLYVMFLSGGITLF.....RR..Q..LAV C8N9S3_9GAMM/8-44 LKTHLPLHTWCGVVSALFLIVCFLAGALTLF.....LD..D..LNR D0RXW9_ACICA/8-44 MKLAKSMHTWVGVCAGILLFICFFAGGLSMF.....QH..H..ISK B8LBC8_9GAMM/8-44 IKVYKDVHIWVGIFAGLMLFVAFYAGSITMF.....EK..P..LER C7JI01_ACEP3/8-44 VQMYRDIHSWVGILAGLFLFVAFYAGGISVF.....EV..P..LQN Q5FT79_GLUOX/8-44 VRLYRNVHSWVGIMAGLFLFVAFYAGGMTMF.....EG..V..LES Q12RL8_SHEDO/8-44 LRTYQSIHTWTGILSGLVLFIGFYAGALSLF.....KP..Q..ITQ B8CH09_SHEPW/8-44 LRTYQSIHTWTGITTGLLLFIAFFAGAITMF.....KP..Q..IEQ Q0HN36_SHESM/8-44 LRVYQSIHIWTGIIAGIVLFIGFYAGSLTMF.....KG..A..IDA A4C3B5_9GAMM/8-44 LRTYQNLHSWTGIIAGLFLFIGFFAGALTMF.....KE..P..IDS A3XL45_LEEBM/6-42 YNILFNLHTVSGIVISVALYVIFFAGSFSFF.....RD..E..IVA C6VZF2_DYAFD/6-42 YNIYFHTHTISGIIIAALLYVIFFAGSFSFF.....KD..D..IAA C6M2E2_NEISI/8-44 RKVMAEIHTWTGLVCSWVLFVIFLAGSIAFF.....RA..E..LDV D0C7J5_ACIBA/4-40 RQIQAILHSWFGIIVLWVIFFIFFTGSIAYF.....RT..E..INV C6RPP4_ACIRA/4-40 RQVQATLHSWLGIVVLWSGFLIFFTGSIAYF.....RT..E..INL A0Y2T0_9GAMM/6-42 FRSMTWLHTWVGLLTCWIIYVIFFAGTASFF.....RD..E..INL B4X345_9GAMM/6-42 RQSMAWLHTWTGLLLGWLLVAIFITGTSAYF.....RE..E..ITL D0S9L6_ACIJO/6-42 RQSMAWLHSWLGLTLGWLLFAIFLTGAATYY.....RH..E..INL D0C488_9GAMM/6-42 RQSMAWLHSWTGLIFGWLVFTIFLMGSLSYY.....RH..E..INL C6RJJ5_ACIRA/6-42 RQSMASLHSWTGLLLGWLLFAIFLMGSTAYY.....RH..N..LNL B1M776_METRJ/8-44 RQAMAWLHTWSGLVVGWVLFAIFVTGTASYY.....RT..D..ISD B9KVQ3_RHOSK/6-42 RQSMAWLHTWTGLVVGWVLFLVFVTGTAGYV.....QY..E..ISR B5JSN4_9GAMM/6-42 RKSMTWLHTWSGLVLGWFLVLVFLCGTASYF.....RP..E..ISQ Q15P87_PSEA6/6-42 RKSMIWLHTYSGLVLGWLLFTIFLTGTLSYF.....NP..E..ITQ Q0BS45_GRABC/6-42 VQSMTWLHSWSGLVFGWLLFAVFLCGTLTIF.....DK..E..ISQ B1J5Z5_PSEPW/6-42 TQSMAWLHTWGGLIFGWLLFAIFVTGTLAVF.....DK..E..LNH A9KV28_SHEB9/6-42 RTRMSLLHTWAGLMLSGLLFAIFWTGTLSVF.....DK..E..IDR Q0K0L2_CUPNH/23-59 RQAMTWAHTWIGVLLGGVLMVAFFMGSVAVF.....DR..E..VDR F0Q8R5_ACIAP/12-48 RKRMAGVHTWCGIVLGVLLLVVFWMGTLSVF.....DR..E..LDR A6GSF3_9BURK/10-46 RQHMAWFHTWFGLFIGFLLFAVFWMGTLTVF.....DK..E..FDR Q1NHY2_9SPHN/14-50 RQCMTWLHGWTGLLLGHVLFLMCLTGTLTVF.....KA..E..IGR C1DRW8_AZOVD/8-44 RQSMTWLHRWAGLLLGWLLFAIFLTGTLTVF.....DK..E..INW A9BZL0_DELAS/20-56 RQAQAWLHTWCGLWFSWLLFAVFLTGSLAVF.....QE..A..ITH Q4UZ83_XANC8/6-42 RQSMAWLHTWCGLTCGWLLCAIFLTGTLSVF.....RD..P..ITS Q2KXM1_BORA1/6-42 RQRMSWLHTCCGLLCAWLLCLIFLAGSLSVF.....RE..P..ISH B7WWN8_COMTE/12-48 RQTMSWLHTWCGLVCGWLLCAIFLTGSISVF.....RE..P..VTL A9IIV4_BORPD/14-50 RQAMSWLHTWAGLVFGWLLFAMFLTGTLAFF.....RP..E..ITH B1J398_PSEPW/6-42 RQAMAWLHTWAGLIFGWLLFAIFLTGTLSYF.....KE..E..ISH D0SWS0_ACILW/11-47 RQSMSWLHTWASLILGWLLYAIFLTGTLSFF.....QN..E..ITV Q213N2_RHOPB/13-49 RQSMSSLHTWTGLLLGWILYAMFLTGTVSYF.....KD..E..LSQ A6V581_PSEA7/7-43 SRLWFLVHSWLALPIWFFVLIVCVTGTLAVV.....SQ..E..IVW Q2RRQ1_RHORT/11-47 ARLWFLVHSWMGLPLWAYVFFLCFTGTLASV.....SH..E..IMW D5VK26_CAUST/29-65 VRAMLAGHSALGLAFAALIYLVCFSGSVAVF.....TQ..E..FGR B0T0F6_CAUSK/33-69 VRTVLSGHSGLGLVAAALIYIVCLSGTVAVF.....LN..E..LKL A3UDT1_9RHOB/18-54 VARMLSAHAGLGVILGALLYIVSLSGVLVVF.....HA..E..FAR Q15Z43_PSEA6/19-55 SKRSLSAHAWLGLFVSAFMYIICLSGTLAVF.....HQ..E..LER #=GC seq_cons pphhhhlHpWhGlhhuhllhlhFhoGslhha.....ps..p..lsp //