# STOCKHOLM 1.0 #=GF ID MRP-S25 #=GF AC PF13741.1 #=GF DE Mitochondrial ribosomal protein S25 #=GF AU Coggill P #=GF SE PfamB-B_2836 (release 25.0) #=GF GA 25.00 25.00; #=GF TC 25.10 25.90; #=GF NC 24.50 24.90; #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq #=GF TP Family #=GF RN [1] #=GF RM 17287295 #=GF RT Eukaryotic ribosomal protein RPS25 interacts with the conserved #=GF RT loop region in a dicistroviral intergenic internal ribosome #=GF RT entry site. #=GF RA Nishiyama T, Yamamoto H, Uchiumi T, Nakashima N; #=GF RL Nucleic Acids Res. 2007;35:1514-1521. #=GF RN [2] #=GF RM 11278769 #=GF RT Identification of 12 new yeast mitochondrial ribosomal proteins #=GF RT including 6 that have no prokaryotic homologues. #=GF RA Saveanu C, Fromont-Racine M, Harington A, Ricard F, Namane A, #=GF RA Jacquier A; #=GF RL J Biol Chem 2001;276:15861-15867. #=GF DR INTERPRO; IPR016939; #=GF CC This is the family of fungal 37S mitochondrial ribosomal S25 #=GF CC proteins. #=GF SQ 31 #=GS C5DMP0_LACTC/1-232 AC C5DMP0.1 #=GS RT25_KLULA/1-233 AC Q6CP16.1 #=GS RT25_VANPO/1-231 AC A7TLZ8.1 #=GS B5VKL4_YEAS6/1-234 AC B5VKL4.1 #=GS C5DPB5_ZYGRC/1-231 AC C5DPB5.1 #=GS RT25_CANGA/1-232 AC Q6FVZ7.1 #=GS C4R2M9_PICPG/1-220 AC C4R2M9.1 #=GS C4YBP9_CLAL4/65-297 AC C4YBP9.1 #=GS RT25_PICST/1-236 AC A3LYR9.2 #=GS RT25_PICGU/1-234 AC A5DKB1.2 #=GS RT25_DEBHA/1-236 AC Q6BUH8.1 #=GS RT25_LODEL/1-238 AC A5DT31.1 #=GS B9W8R8_CANDC/1-250 AC B9W8R8.1 #=GS C5MB12_CANTT/1-236 AC C5MB12.1 #=GS RT25_YARLI/1-229 AC Q6CAD1.1 #=GS RT25_SCHPO/1-207 AC O42911.1 #=GS B6K6P1_SCHJY/1-219 AC B6K6P1.1 #=GS Q4PFH1_USTMA/1-247 AC Q4PFH1.1 #=GS A8PWQ3_MALGO/1-72 AC A8PWQ3.1 #=GS Q5KIK7_CRYNJ/7-217 AC Q5KIK7.1 #=GS A8N2D4_COPC7/1-213 AC A8N2D4.1 #=GS B8LTW1_TALSN/1-232 AC B8LTW1.1 #=GS B6HUL7_PENCW/1-230 AC B6HUL7.1 #=GS B8N9W4_ASPFN/1-230 AC B8N9W4.1 #=GS RT25_EMENI/1-230 AC Q5B4U6.1 #=GS C5GE54_AJEDR/1-231 AC C5GE54.1 #=GS RT25_COCIM/1-231 AC Q1E036.1 #=GS C5FF01_ARTOC/1-231 AC C5FF01.1 #=GS RT25_CHAGB/1-211 AC Q2GVC2.1 #=GS C7YVY5_NECH7/1-212 AC C7YVY5.1 #=GS C9SJU4_VERA1/40-250 AC C9SJU4.1 C5DMP0_LACTC/1-232 M..KVQQNAVNVLERTSSYLKA....GLLKKTPAWYDVVAFVPPSK..RFVREPRLVNPSTNKETAKLSEFAEQ.YSVEN..........RSYKTRASRSE.RQVSGSKLFAAPKLKYAEDKLREVFYEQHPWELSRPKMLVENS....GTH...DYDWST.IQQLGKPLDGESVVQRTLYLLRTK....AHQELLAAYDQARFEFYRLRIQEEVQNQVAQEEAEMFGSVFGPSAIDFGLEKEQKIIDVWKQKAIDQTEVMSAR RT25_KLULA/1-233 M..KVQQEAVNVLERTSAYLKS....GILKKTPAWYNVIAKVPPTK..KFARTPQLTHPMNGKSRTALPDYSNW.KANSS..........GLYKTRPNSLE.KKDGASKLYQSPKLVYIEDKLRKLFFQQHPWELSRPKILVENT....LET..QEYDWSH.IQQLGKPLDGESVVQRTLFLLKSG....EKKELIDAYDQARFEFYRLRIQQEIQDQVAQEEAEMFGSVFHTTSIEYGIAKEQKVIDTWKRKALQQAELMAAR RT25_VANPO/1-231 M..KIQKNAVNVLERTSAYLRA....GLLTKQPAWYNVVASVPPLK..KFERVPKLTNPSNDRINGQLHSLDSSAGNN............GMFKTRYTAKD.RSNASKQLYSASKLTYIEDQLREIFYKQHPWELSRPKILIENN....GDE...KYDWSH.MQQIGKPLDGESVVQRTLYLMKNK....EAPSLVLAYDMARYEFYRLRMQQHIEEQVAQEEAEMFGSVFGPSAIEYGIQKEQKVIDTWKRKAIIQTEIMAAR B5VKL4_YEAS6/1-234 M..KIQTNAVNVLQRTSAYLKS....GLLKETPAWYNVVASIPPST..KFTREPRFKNPSNGHIIGKLVDVTEQPHANNK..........GLYKTRPNSSD.KRVGVKRLYRPPKLTYVEDRLRSLFYKQHPWELSRPKILVENEI...GDE...NYDWSH.MLQIGRPLDGESVIQRTMYLIKTK....QYGDMVEAYDHARYEFYALRMQEETEQQVALEEAEMFGSLFGVSAIEHGIQKEQEVLDVWEKKVVEETELMAAR C5DPB5_ZYGRC/1-231 M..KLQTNAVNVLERTSAYLRS....GLLRETPAWYQVVASVPPTT..KFTREARFINPSTGKKTVQWKEFDE..GINRK..........GFYKTRNSSFD.RKPMDSRLYKAPKLQFLEDQLREVFYQQHPWEFSRPKMLVENE....INE...NFDWSY.MSQLGKPLDGESVVQRTIYLLQKD....PELGIIDAYDRTRFEFYRLRMQEEIEQQVAQEEAEMFGSVFSSSAIDYGVEQEQRVIDVWKQKAIEETELLAAR RT25_CANGA/1-232 M..KIQTNAVNVLERTSAYLRT....GVIKETPAWYNVVASIPPVT..KFTREPHKINPSTDKKVSELKDPDLE.SVNRN..........GLYKTRFNALE.RKVANKQIYKPPKLVYLEDKIRTLFYKQHPWELARPKIVSENE....INT...NPDWKN.MLQLGQPLDGENVVQRTLYLLKTK....EQSNITDAYDQARLEFYRLRMQQELEEQVAAEEAEMFGSVFGPSTIEHGVTKEQQVIEKWKRDAELQSELLSAK C4R2M9_PICPG/1-220 M..KIQQNAINILERTSNFLKS....GVIKQQPAWYKVVGSIPPQV..DLTRKAAVNQQNTTNFVSQP......................STFKTRVN....PRTIKNKLYRSQKLEFVEDELRALFYDQHPWERANPKLVVENA....NDIELFKLDWSN.IRQLTKPFDGENVVQRTLYLVQN.....ENLSILEAYDKARFEYYQVKMQLEAEDSISKEEATMYGAQFKESALEYGFQKEQEVIDQWKEEAEQQTELLQNK C4YBP9_CLAL4/65-297 M..KIQTRAAGVLERTSHYLKA....GVIRNKPSWYNAVAAFPPAT..DLTKKPVNLQFN.QRQDPFSQMFEKKDGR...............FKTRANRAE.RQQQNNSVSRIPKLAFLEDQLRDVFYHQHPWEFARPKVLVEND....GAEQ.SKCDWSH.MLQFHKPLDGESVVQRTLWLLQDAKKSGEEKTLFDAYDQARFEFYQLRMAEEMESAVAKEESAMYGAVFASSNMSWGLEKEQEFIDVWAKVGEERTKIREAS RT25_PICST/1-236 M..KIQSKATTVLERTSHYLKV....GVLKQKPAWYDVVGAFPPHT..DLTKKPKVLELKTQKPDPFTSLFGTSRND.............GTVKTRASAFD.RLQKNNSISRIPQLEFLEDELRDVFYHQHPWEFSRPKTLIENK....GDEY.KDCDWSH.MLQFNKPLDGESVVQRTLWLLADSKKNGPKLSLFEAYDKARFEFYRLRMREEMNSSVSREESVMYGAVFPTTHLEWGVQKEQEYIDVWAKVASDKTKVASAN RT25_PICGU/1-234 M..KVQTGATGVLERTSHYLKA....GLLRTKPAWFDVVGAHPPST..NLTKKPKLFETGGQKSDPSESIFTKINGE...............YKTRTSVED.RKQKNNSVSRVPKLQFLEDQLRDVFYHQHPWEFSRPKVLVETS....GDDN.SKCDWSH.MLQFNKPLDGESVVQRTLWLLNRSKMDGKSITLFDAYDEARFEFYRLRMEEEMSSAVSREESTMYGAVFPSPHLEHGVNQEQEYIDIWTKVAGDATKVKTAS RT25_DEBHA/1-236 M..KIQTKATGVLERTSHYLKA....GILREKPAWFNVVGSHPPMM..DLTKKPKKFDTQAQENDPSRSLFQKKKGG.............DLFKTRSNIYD.RQQRHNSISRVPKLEFLEDQLRDVFYHQHPWEFSRPKTLIENE....GNES.SQCDWSH.MLQLYKPLDGESVVQRTLWLLQDSKKTGKTMSLFEAYDQARFEFYRLRMEEEMSSTVSKEESSMYGAIYPSTNLDWGIKKEQEYIDAWTKVAGEKTKVRDAN RT25_LODEL/1-238 M..RIQTDAVNVVSRASSYLLS....GLLKRKPLWFDVVAKYPPKQ..NLIKVPYIQSKENKDPRNDQFELKKRDRKRPLS.........ALYQTRASKME.NGNLNRKIHRIPKLKFLEDEIRDYFHLRHPWENARPKTLVENS....GDEVLRKCDWSR.MLQLYKPLDGESVVQRTMYILQNDP...EVKDVFEAYDIARFEYYKLRMAEEMESHVAKEESVMHGAVFESTHLDWNLTTEQKYIDDWVKIASEKTQVLEAN B9W8R8_CANDC/1-250 M..KIQTDAANVLQRASAQLKS....GLLKEKPLWYDIIAKYPPTSTNDLIKKSHVYEGKSDPRNNSIIYKYPNSSSSSTNKSGGGVSSTILFKTRPSNKE.LKSKNHNIHKLPKLKFIEDSLRKIFYQQHPWELSRPKNLIDNDN...GNNN.EKCDWSH.MLQLYKPLDGESVVQRTLWLLKNNNI..KKLSMMEAYDKARFEFYKLRMQEEMESHVSKEESSMYGSVFTSTTVNWNLFKEQEYINDWTIIAKERTQVIEAN C5MB12_CANTT/1-236 M..KIQTEASNVLQRASANLRA....GLLREKPVWFDVVSKYPPNH..NFIKVAHMNESNTKDLRKKAVSIQKNSSSSSSQ.........QVYKTRQSTLE.STSRNNQVHRVPKLRFVEDSLRKIFYKQHPWELARPKNLIENS....GEEN.NKCDWSH.MLQLYKPLDGESVVQRTLWLMKNE....SNLTPFEAYDKARFEFYKLRMSEEMESHVAKEESSMYGGVIGSTNVNWNLSKEQEYIDIWTQIAEERTQVMEAN RT25_YARLI/1-229 MSQRIKTAAVDIVHITSGRIAS....GMLSHEPIWYRAMAANMPTT..VYQHKPHFEKLARIAQRESEKLN...................EFIKTRSKP...VRVRTRHLYEPVHLKFMEDEIREIFYKQHPWELARPKLIVENS....GDDH.VTQDWSK.MYQANKKLDGESVVQRTIYLLGEKKTH.DQKALLEAYDKARFEFYKLRMAEDVQNVTAAEEADMFGACFSTSSVERNLFHEQKRIEDWKEKAVEMTLDMGAK RT25_SCHPO/1-207 M...PKFNANGLLRSFAAEMK.....KPWTAESLWYETVAKHPPTF..QYARRIVPLYDPNKVKSR....................................GKRLRKSMYQPQEIQWPEDKLRKRFYRDHPWELARPQIIAEND....GNDQ.QYCDWSH.MDQPRKALSGESVVQRTLWLIEN.....SNMPVENAYDQARKEFYHLRAEQEIQQRVAHDQAQALGAVFTKSDLELGYEMDQNALNSWFDNASQYAEANRTK B6K6P1_SCHJY/1-219 M.KVPNIQANAILKKFGSEMR.....KHWVKEPVWYQAVVQTPPTF..QFQKRIVPGYEKAVAKWQATGHKSQCGS..........................NGKVRANMFKLRKLRWPEDASRKRFYQEHPWELARPRILSEND....GQDF.VYCDWSR.MDQPRKGLDGESVVQRTLWLMEH.....KTMTQEDAYNKALQEFYNLRANEEIEQRVALDQAQALGALLTKDDLELGFELDQAAANDWKQKATERTRLLHDK Q4PFH1_USTMA/1-247 MPRRI...PSQVPQTVSRLLEA....GFLKRPPAWFEAVNNHPPVT..LPARHPVSRPDEDLPVRLRASSQTSLANAGPSSASADGAAPATHGRDTTNSKK.KSRTLTPKLTPKPIVYEEDRIRQQFFRDHPWEAYRPKTLVEMSEQVGGETR.VHGDPKR.LRSYGRNPSVEDFVACTLAAHRQ.....GGLSLSQAYHNTLSSYHGLKAEHEHATRYAILEAKYYGADLGKTETQRGFEKEEKALASWAAWAAGGTAGVDGA A8PWQ3_MALGO/1-72 M................................................................................................................................................................................................SLSQAYRRTIASFHAVQAEREQRLRFAILEARNYGADFSLSETERGFAKEAQELDKWAVTNAHVSVDEANK Q5KIK7_CRYNJ/7-217 T..................................VCIFHDLEPSY..LPPYQVKSRPRVSAKLPGGGSGDGGGQFIDTA..........PIPAGELERRDRLRGYKQRKGRPLKIAYEEDWVRRQFFKDFPFEALRPVSMVEGVEIDVREKV.GGEEWTS.LEQRGLYPTVEDCIEFVINVRNT.....RNVSISEAYALATEEFVSLRGRHQLATLAAEIEARHYGAEFKPDVFERAFNLEEKALESLRPFTASSSSSSGSS A8N2D4_COPC7/1-213 MVRRI...ASQVHQQVSRLMRG....GYIKKEPVWFKAVLDNPPLA..LPPKAPPARTAYDRKPQLA...................................PLQAYPKNPKPLPIYYIEDDLRRQFFRDHPFEAFRPRTLVEADRIHDAHPV.KGENWTR.LRQRGRNPTPEDAIQYALNLYQY.....HGVSLSEAYARSVAQFRALRSEHHVATVFAVMEAEALGGTFAPDEVDRTFQKEAEALETWQLKEKKDEGALAAR B8LTW1_TALSN/1-232 M.GKYNLTALRVRQTALRQRAN....GKIDKLPEWVDIVGDIPPAQ..VVVRHQPIQHEYLRQRVRTVPGTSKLE...............VYFESINQRRTNRNKKPSKLFQPLKIKYEEDQLRKEFFRDHPWELARPRIVLEKS....GKDF.ENYDWSR.IQQPGKRLDGESVVQRQLWLLNNV....PDMTKTAAYDIARREFYRLRLRQEIEQRVAAEEAEATGAVFGPRMLDISMELEGKVYEDWKVWAKTQAQIMDQK B6HUL7_PENCW/1-230 M.GKINLTALRVRQTALNQFAS....GKTSKLPQWVGVVGEIPPAE..TLIRTRPPQHELVQQRLKTVPGSSKPQ...............VVFQVQEKRR..KPKKPSRLFQPVELKYEEDQLRTQFFRDHPWELARPRVLLEST....GKDF.EHYDWSR.IQQPGKRLDGESVVQRQLWLLNNV....PDMTKSAAYDIARREFYRLRLKEDIQRRVAAEEAAAYGAEFGPSYLDIGMKMENEQYDKWVAWARETSLVQDQR B8N9W4_ASPFN/1-230 M.GKYNLTALRVRQTALRQKEA....GKTHQIPKWIDVVRDIPPAQ..VLVRNQQQQHQLVRQRLKTLPGASKPQ...............VVFEVQEKRV..KPKKASRMFLPTEIKYEEDLLRKEFFRDHPWELARPRVVLEST....GKDY.ENYDWSR.LQQPGKRLDGESVVQRQLWLLNNV....PDMTKSTAYDIARREFYRLRLQEDIERRVAAEEAEATGATFGPTRLELGMELENQEYERWKVWAKSEAQVQEQR RT25_EMENI/1-230 M.GKYNLTALQVRKTAIDSIAA....GKKGDLPRWVNVVGDIPPAQ..ILVRERPQQHPLVRQRMKTIPGNPTPQ...............PVFQVQTKRV..KPKKASRMFLPVEIKYEEDQLRKEFFRDHPWELARPRILVESS....GKDS.ERYNWSR.MQQPGKKLDGESVVQRQLWLLNNV....PDMTKSRAYDIARREFYRLRLQEDIERRVAVEEAEATGAVFGPSRLEIGMELENQQFEAWKSWAKTEAQIVDQA C5GE54_AJEDR/1-231 M.GRYNLTALRVRRTALATTQC....GKPGTRQPWLDVMADIPPAS..ILVRNQAPSHPIIKQRMRTVPGKSKPQ...............LEIRTSVGRKQ.TSKKPSRVFQPKEIRYEEDQLRKEFFRDHPWELARPRVVLEND....GNDH.RRYNWQN.IQQPGKKLDGESVVQRQLYLLNNV....PDMTKGAAYDIARREFYQLRLQEDVERRVAQEEALATGAYFGPDMHTVGMELENQEYEKWKVWAESENQAMEQR RT25_COCIM/1-231 M.GKFNLGALRVRQNALAQKSS....GKISQTPCWVDIVSEIPPAT..VLVRNLPQQHALVQQRVKTLPGKSRPQ...............TVIEEREIRRI.KTKKASRMFQPMQIRYEEDELRKQFFQDHPWELARPRVVLETN....GNDH.ARYDWSR.LQQRGKRLDGESVVQRQLYLLNNV....PDITKGEAYDIARREFYQLRLQEDIERRVAQEEARATGAYFGPDMMQVGMELENQEYDRWKIWAEKEAEQASQR C5FF01_ARTOC/1-231 M.GKLNFAALQVRQSAISQAAA....GKIRNKPCWIDIAEKIPPSS..VLVRNLPQQHPLTRQRVKTLPGKTEPQ...............TVIETRPSRRP.KSKKPSRMFQPVRIEFEEDQLRREFYRDHPWELARPRVVLEND....GKDH.LRHDWSK.LQQSRKRVDGESVVQRQLHLLNTV....PDITKEEAYDIARREFYKLRLQEDVDRRIAQEEARATGAYFGLDMNTIGMELENQEYERWKAWAETEIVMQQSN RT25_CHAGB/1-211 MVRGRQFLAARVYDTARAGMSSTIIQNTRPNVPMWLKALDHIPPAE..VLTRPYPIQHTEPKDRGR....................................AAQRPRNLFRPTKIVHPEDQLRQEFYRDHPWELARPKLVLELD....GQDA.RRRDWSKGLRQPGM.....AVVQRQLWYMEV.....RGLSKARAYDVARKEFYKLRQQEEIERRVAVEEARMYGAYFGKNNLQVGMELEDAAYEQWKKWATIEISKLEAE C7YVY5_NECH7/1-212 M.GGRQIRPARVFQTVTEELNHNLLGQKSIATPPWYNIMQTIPPSE..TLVRPIPTRHRAPNP.......................................RATKPKNIFRPQRIKYLEDGLRTTFYKDHPWELARPRIIMELD....GKDY.QHCDWSKGLKQPSIPLSGECVVQRQMWLMEN.....ENMTERKAYDVTRREFYRLRQAEEIEKRVAVEEARHVGAYFGKTRIDVSHGLEDREFENWKLWAGKETERTEAR C9SJU4_VERA1/40-250 M..GKQLRPARVFQTVTEELSHRILPQHQVQAPPWYKALKSIPPTE..TVIRSRATILQ......................................ASTS.KSRKPRNLFKPQQITYEEDELRTIFFKDHPWELARPRVVLELD....GKDW.QRCDWSRGLRQPGLAISGESVVQRQMWLMNN.....TGLPRDQAYDIARKEFYALGQEEEVEKRVAREEARYVGAYFGKNKLDIAQDLEDKQYETWKQWAQSEVVRIEQD #=GC seq_cons M..KlphpAspVhppsos.lpu....GhlpppPsWaslVushPPsp..phsRp.hhpp..sppphtph...tp..................hhcsp.pth..+pppssplapss+lpa.EDpLRchFa+pHPWELuRP+lllEss....Gc-..tchDWS+.hpQhsKsLDGESVVQRsLaLlps.....pshohhcAYDhARhEFY+LRhpEEl-ppVAtEEAchaGAsFusopl-hGhphEpchl-sWcphApppoplhpuc //