# STOCKHOLM 1.0 #=GF ID Fer4_18 #=GF AC PF13746.1 #=GF DE 4Fe-4S dicluster domain #=GF AU Coggill P #=GF SE Jackhmmer:Q5FDF3 #=GF GA 25.00 25.00; #=GF TC 25.00 25.00; #=GF NC 24.90 24.90; #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq #=GF TP Domain #=GF CC This family includes proteins containing domains which bind to #=GF CC iron-sulfur clusters. Members include bacterial ferredoxins, #=GF CC various dehydrogenases, and various reductases. The structure of #=GF CC the domain is an alpha-antiparallel beta sandwich. #=GF SQ 40 #=GS A3U178_9RHOB/211-307 AC A3U178.1 #=GS A3V7E4_9RHOB/180-240 AC A3V7E4.1 #=GS Q28KJ2_JANSC/213-307 AC Q28KJ2.1 #=GS Q1GDJ4_SILST/214-278 AC Q1GDJ4.1 #=GS Q16AS3_ROSDO/214-278 AC Q16AS3.1 #=GS B6AWL4_9RHOB/212-276 AC B6AWL4.1 #=GS A4WPY0_RHOS5/214-279 AC A4WPY0.1 #=GS A3WG85_9SPHN/249-314 AC A3WG85.1 #=GS E6VE68_RHOPX/213-281 AC E6VE68.1 #=GS A0NRE2_9RHOB/219-287 AC A0NRE2.1 #=GS B6R4L7_9RHOB/194-262 AC B6R4L7.1 #=GS B6IT12_RHOCS/229-293 AC B6IT12.1 #=GS C6BXV5_DESAD/244-335 AC C6BXV5.1 #=GS Q312Y3_DESDG/246-337 AC Q312Y3.1 #=GS B8HJR4_CYAP4/275-367 AC B8HJR4.1 #=GS Q8U2E5_PYRFU/238-329 AC Q8U2E5.1 #=GS B3QU20_CHLT3/243-335 AC B3QU20.1 #=GS A5G7H1_GEOUR/210-274 AC A5G7H1.1 #=GS B7IDP3_THEAB/195-262 AC B7IDP3.1 #=GS A1ASR8_PELPD/252-344 AC A1ASR8.1 #=GS A0LED1_SYNFM/317-379 AC A0LED1.1 #=GS D9TMK8_THETC/231-325 AC D9TMK8.1 #=GS B1R0G1_CLOBU/232-326 AC B1R0G1.1 #=GS C6A4M6_THESM/237-326 AC C6A4M6.1 #=GS Q0AZW5_SYNWW/236-326 AC Q0AZW5.1 #=GS Q2VZ05_MAGSA/224-288 AC Q2VZ05.1 #=GS D5VJF1_CAUST/237-301 AC D5VJF1.1 #=GS C9QD42_VIBOR/225-291 AC C9QD42.1 #=GS A3QHK1_SHELP/225-288 AC A3QHK1.1 #=GS Q31E71_THICR/235-302 AC Q31E71.1 #=GS A8H7U9_SHEPA/224-305 AC A8H7U9.1 #=GS C6WWP6_METML/222-288 AC C6WWP6.1 #=GS A4VN29_PSEU5/221-287 AC A4VN29.1 #=GS A4SW13_POLSQ/220-286 AC A4SW13.1 #=GS Q46ZN2_CUPPJ/228-294 AC Q46ZN2.1 #=GS D5WZQ2_THIK1/218-284 AC D5WZQ2.1 #=GS Q3SL27_THIDA/228-294 AC Q3SL27.1 #=GS C6BGW3_RALP1/227-293 AC C6BGW3.1 #=GS A1VP27_POLNA/222-288 AC A1VP27.1 #=GS B1Y803_LEPCP/217-283 AC B1Y803.1 A3U178_9RHOB/211-307 VCIYMCPWPR....................IQ.GAMMDP...GTLTVGY....................RRWR.GE........................PRG..........................KG....GVKR....AQAAAEAIGSGEAVARYGAALDKDSAAPRTARDGG....VLGDCID..CNACVAVCPMGIDIR A3V7E4_9RHOB/180-240 VCNYMCPWPR....................IQ.AAMMDP...ETLTVAY....................RDWR.GE........................PRG..........................KQ.......R.....................................VE....GAGDCID..CMACVNVCPAGIDIR Q28KJ2_JANSC/213-307 ICIYACPWPR....................IQ.AAMMDE...HSITVAY....................RDWR.GE........................PRG..........................KG....KNRR....VVAEKAIADSRLAGSLV..TGQEPGSTTTASPDIQ....VLGDCID..CNACVNVCPMGIDIR Q1GDJ4_SILST/214-278 ICIYACPWPR....................IQ.AAMMDE...DTLTVGY....................R.D............................WRG..........................EP....RGKH....RKSA............................EAE....QLGDCID..CMACVNVCPMGIDIR Q16AS3_ROSDO/214-278 ICIYACPWPR....................IQ.GAMMDE...DTLTVAY....................RPWR.GE........................PRK..........................HS.............EEVK...........................AGE....PMGDCID..CMACVNVCPVGIDIR B6AWL4_9RHOB/212-276 VCIYMCPWPR....................IQ.AAMMDP...DTITVAY....................R.D..WR........................GED..........................RK....NS.......EAVK...........................AGA....PQGDCID..CMACANVCPVGIDIR A4WPY0_RHOS5/214-279 ICIYACPWPR....................IQ.AAMMDE...ETITVAY....................R.E..WR........................GEP..........................RG....KLKK....GEPVS.............................E....AQGDCID..CMACVNVCPMGIDIR A3WG85_9SPHN/249-314 VCIYMCPWPR....................IQ.GAMLDE...KSLIVTY....................K.....D........................WRG..........................EK....RGSL....KKSLK...........................NPD....EYGDCVD..CLQCVAVCPTGIDIR E6VE68_RHOPX/213-281 VCIYMCPWPR....................I.......Q...AALTDEW....................A.LN.VT........................YRY..........................DR....GEPRMSVKKAEVIR.........................AHGE....IAGDCID..CHQCVNVCPTGVDIR A0NRE2_9RHOB/219-287 VCIYMCPWPR....................IQ.AAMTDE...KALNVTY....................R.WD.RG........................EPR..........................GS....LKQN....KKLAD...........................QGL....PAGDCVD..CYQCFQVCPTGVDIR B6R4L7_9RHOB/194-262 VCVYMCPWPR....................IQ.AALTDE...HALNVTY....................R.YD.RG........................EPR..........................GH....LKES....KKRLA...........................EGL....PAGDCID..CNQCFYACPTGVDIR B6IT12_RHOCS/229-293 VCTYMCPWPR....................FQ.AAMLDR...DSMVVTY....................EKWR.GE........................PRG..........................GS....KA.........GP...........................APE....GLGDCID..CGQCIAACPTGIDIR C6BXV5_DESAD/244-335 ACTYLCPTCYCFNITDESD..GVKGERIRSW..DNCMSN...QFTLEAS....................G.HN...........................PRP..........................TK....AHRL....KNRVGHKFS...................YYPDLHD....GVISCCG..CGRCIKSCPVGVDIR Q312Y3_DESDG/246-337 ACTYLCPTCYCFNMT..........DEQSGL.QGKRLRT...WDTCMSF....................E.FT.LE........................GSG..........................HNPRPTKAHR....LRNRMGHKF..................AYYPELHE....GLIACCG..CGRCIKSCPVSLDIR B8HJR4_CYAP4/275-367 NCTLVCPTCF....................CS..TVEDT...TDLQGDH....................A.ER.WRRWDSCFTMDFSYLHGGGSVRPSNRSRY..........................RQ...WMTHK....LATWI...........................DQF....GTSGCVG..CGRCITWCPVAIDIT Q8U2E5_PYRFU/238-329 ICNTTCPTCRCYEVQDIVNLDGVTGYRERRWDSCQFRSH...GLVAGGH....................N.FR.PT........................KKD..........................RF....RNRYL..CKNAYN...........................EKL....GLSYCVG..CGRCTAFCPANISFV B3QU20_CHLT3/243-335 TCAMVCPTCY....................CYQVEENIA...VNLRTASKDQMLYSCTILDFAEVAGGHN.FR.PN........................KED..........................RL....KYRY....YHHYRG........................FAENA....SEPICVG..CNRCGRACLAGINPK A5G7H1_GEOUR/210-274 ACRSICPFCY....................CE..QCMCD...RNRPQAV....................E.TS.PR........................PAG..........................NM.......A....WHIVR...........................AMH....LSGRCAG..CAECERACPMDIPLN B7IDP3_THEAB/195-262 ICTDRCPQHM....................RIPE.YIKAIWKDDLKEAV....................N.IL.LK........................GDL..........................E.............QDMLG...........................ANP....FSSVCGRVCTHKCEEACSIGNR.G A1ASR8_PELPD/252-344 GCTFVCPACTC..................FTVTDRKIGP...TEIERLKVWDACAFSG.FTRMAGGHNPR.QA.VH........................DRR..........................NR......RF....FRKLHHY.......................FIQRE....LSVACIG..CGRCAVVCHGDIGMP A0LED1_SYNFM/317-379 ACLNVCPVYG.........................KIGG...HAYGHVY....................C.GP.VG........................SVL..........................TP....LLVG....VNRAK...........................D......LCLGETL..CGACRDACPLHIDIP D9TMK8_THETC/231-325 ACTAACITCSCFNT............VDLIYSENANVGE...RRRVQAS....................C.MH.KDFTEMAG...........CHVFRKTAGE..........................RM....RFRT....LHKVY...........................DYKARFKTENMCVG..CGRCDERCPELISFS B1R0G1_CLOBU/232-326 SCTIACSTCT.........................CYTT...RDIVYDS....................E.GN.IG........................ERKRVEASCHIGGFDEMAGGHRFRVTAGQKM....RYKV....LHKVH...........................DYKQKFGDNHMCVG..CGRCTDRCPQYISMT C6A4M6_THESM/237-326 NCNMVCPTCR....................CYEV....C...DLWVNAY....................E.AV.RVRRYDSCF.........METHGLVAGGH..........................NF....RATR....LDRFRHRYY..................CKNYFDPE....SGFNCVG..CGRCDEFCPAKIEHV Q0AZW5_SYNWW/236-326 ICTYLCPSCYCFDIQVKNQ..GEAGYRFRCWD.SCMYGE...YTMM.AG....................G.HN.PR........................ASA..........................TER..FRNRFL.HKLEFFN...........................ERY....GMPLCTG..CGRCIIACPAGIDIS Q2VZ05_MAGSA/224-288 VCLYMCPYSR....................FQ.SAMFDE...HSLIITY....................EEWR.GE........................PRK...................................P....IRKSE...........................TFE....GRGHCID..CKMCVTACPTGIDIR D5VJF1_CAUST/237-301 VCTYMCPWPR....................IQ.GAMLDH...HSLQVTY....................L.GYRGE........................PRG..........................PH.............KKGQ...........................SWE....GRGDCVD..CRQCVVVCPMGIDIR C9QD42_VIBOR/225-291 MCIHMCPYAR....................FQ.SAMFDK...DTFIVGY....................D.S............................KRG..........................ET....RGPR....SRKAD..........................HKAL....GLGDCID..CDLCVQVCPTGIDIR A3QHK1_SHELP/225-288 MCLHCCPYAR....................FQ.SAMFDA...NTLTVSY....................D.AA............................RG..........................ES....RGPR....KRK.............................QAT....DLGDCVD..CNLCVDVCPTGIDIR Q31E71_THICR/235-302 VCIGFCPYAR....................IQ.GAMIDT...ETVVPTY....................D.I..DR........................GEP..........................RG....RMKR....AKPGE...........................DAP....ELGDCID..CNLCVAVCPTGVDIR A8H7U9_SHEPA/224-305 MCLHCCPYAR....................FQSV.MFDS...NTKTVTY....................D.AA..R........................GEN..........................RG....PRKR....NQALNSANLLAA.............NLEASSTVNA....ILGDCVD..CNLCVEVCPTGIDIR C6WWP6_METML/222-288 VCKHMCPYAR....................FQ.SAMFDN...DTLIVTY....................D.QE.RG........................EPR..........................SG....RSRK....VDA.............................KQE....GLGDCID..CNFCVQVCPVGIDIR A4VN29_PSEU5/221-287 VCLHMCPYSR....................FQ.SVMFDA...DTLLVSY....................G.TA.RG........................ENR..........................G......ARR....KGSDP...........................RAQ....GLGDCVD..CTLCVQVCPTGIDIR A4SW13_POLSQ/220-286 VCKYMCPYAR....................FQ.SVMVDK...DTFLVTY....................D.KV.RG.....................................................EP....RGSR...SKSADQ...........................SSL....GLGDCVD..CSICVQVCPTGIDIR Q46ZN2_CUPPJ/228-294 VCKYMCPYAR....................FQ.SVMVDR...DTYVVTY....................D.V............................GRG..........................EP....RGSR....SRKVD..........................HHQA....GLGDCVN..CSICVQVCPTGIDIR D5WZQ2_THIK1/218-284 VCKYMCPYAR....................FQ.SVMIDK...DTLIVTY....................D.T............................ERG..........................EP....RGKR....GKHVD..........................PRAQ....GKGDCVD..CSICVQVCPTGIDIR Q3SL27_THIDA/228-294 VCKYMCPYAR....................FQ.SVMFDS...DTLTVTY....................D.NS.IG........................EPR...........................G....PRSR....KTDYK............................AA....GLGTCVD..CGVCVQVCPTGIDIR C6BGW3_RALP1/227-293 VCRYMCPYAR....................FQ.SVMVDP...DTYVVTY....................D.TL.R.........................GEP..........................RG....SRSR....NADF............................EAQ....GLGSCVD..CSICVQVCPTGIDIR A1VP27_POLNA/222-288 VCKHMCPYAR....................FQ.GAMFDR...DTLIIGY....................D.KA..R........................GES..........................RG....SRPR....TADAK............................AL....GLGDCID..CTLCVQVCPTGIDIR B1Y803_LEPCP/217-283 VCKYMCPYAR....................FQ.SALIDR...DSMVIAY....................D..S.GR........................GEP..........................RG....SRSK....KADLA............................TL....GLGSCVD..CTMCVQVCPTGIDIR #=GC seq_cons lChahCPasR....................hQ.usMhDp...colslsY....................c.ht.hp........................scs..........................ct....ttpp....hcphp...........................pst....shGcClD..CstClpVCPsGIDIR //