# STOCKHOLM 1.0
#=GF ID   SWM_repeat
#=GF AC   PF13753.1
#=GF DE   Putative flagellar system-associated repeat
#=GF AU   Coggill P
#=GF SE   Jackhmmer:Q6D875
#=GF GA   22.00 22.00;
#=GF TC   22.00 22.00;
#=GF NC   21.90 21.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Repeat
#=GF CC   This family appears to be a repeated unit that can occur up to
#=GF CC   29 times in these outer membrane proteins. It is putatively
#=GF CC   associated with a novel flagellar system.
#=GF SQ   14
#=GS A1WHL7_VEREI/78-417     AC A1WHL7.1
#=GS A1SYI9_PSYIN/1785-2089  AC A1SYI9.1
#=GS A1SYI9_PSYIN/3941-4235  AC A1SYI9.1
#=GS A3KT79_PSEAI/2059-2381  AC A3KT79.1
#=GS A0KS56_SHESA/1499-1829  AC A0KS56.1
#=GS A0KNW4_AERHH/3310-3664  AC A0KNW4.1
#=GS A3XJG3_LEEBM/338-645    AC A3XJG3.1
#=GS A1WJB9_VEREI/835-1175   AC A1WJB9.1
#=GS A1WJB9_VEREI/2164-2498  AC A1WJB9.1
#=GS A1WHL7_VEREI/1826-2150  AC A1WHL7.1
#=GS A1WQE1_VEREI/3169-3496  AC A1WQE1.1
#=GS A1WHL7_VEREI/4241-4564  AC A1WHL7.1
#=GS A1WJB9_VEREI/6839-7165  AC A1WJB9.1
#=GS A1WHL7_VEREI/961-1295   AC A1WHL7.1
A1WHL7_VEREI/78-417                TPTA...NL.QRSIY..RLTY......DVAGKAD..DAI..S.....EN.FA.VDTV......RPTLESA...SIAKSDLR....LGEKT...TITITFSERLAFYDNF.TLEDL..QVD.AGK.....GTL....SNLRSYFSD.QER.I.WHVDLQAPTT.........RPASGLDGN.QIRI.NLA..GITDRAGNTIWDSQLHGTGNPWVN..LP...TVSY.NIDNG.....VPPMVAITG............QPAT....TIKGGDSFTVTFTFNERV..T.GFDLDDVQYDTS....KGTLSALTAVG...TDGRVWTATYTPRP.NIESAEN....TISVN.LAG.VRDALGNAGV.GTG....TS.G....NF.SIDT......KP.PEVAVTI...SDERLT....AGESATVTFTFSERVT.GFDLNDAQY.....DTS.KG..T...LGALT.....AVGT...DG..KVWTATYTPRS.DIESANNT
A1SYI9_PSYIN/1785-2089             TPDA..NSITDMTVN..VAADI...AKDPAGNNN..LVA..T.....ES.VQAVDTV......IPTVAIS...DNTTGT......AIGEV...IYTFNFSE.AMSGFTI.DDVIL...TG.GAK.....GTF....T......EV.SAS.E.YTLVV...TP..........DANSITDM.TVNV.AAD..IAKDTAGNN..............N..LV..ATESVQAVDTV......IPTVTISD............NTTG....TAIGEV..IYTFNFSEAM..S.GFTAND.VTLT.....GGTKG.TFTEV...SVS.QYTLVVTP.D.ANSITDM....TVNVA..ADIAKDPAGNNN..LVA.....T.E....SVQAVDT......VI.PTVTISDN.TTGTAI......GEVIY.TFNFSEAMS.GFTAND........VTL.TG..G...TKG.TF...TEV.S...AS..Q.YTLVV.TPD.ANSITDMT
A1SYI9_PSYIN/3941-4235             TPSA..NSITDMTVN..VAADI...AKDTAGNNN..LVA..T.....ES.VQAVDTV......IPTVAIS...DNTTGTA......IGEV...IYTFNFSE.AMSGFTIDDVTL....TG.GAK.....GTF....T......EV.SAS.Q.YTLVV...TP.........S...ANSIT.DMTV.NVAADIAKDTAGNN..............N..LV..ATESVQAVDTV......IPTVAISD............NTTG....TAIGEV..IYTFNFSEAM..S.GFTAND.VTL.I....GGTKG.TFTEV...SAS.QYTLVVTP.D.ANSITDM....TVNVA..ADIAKDTAGNNN..LAA.....T.E....SVQAVDT......EV.PTTTITG.....AVYN......EANN.TLVLTGTN.........IT.....TLL.SG.AE...DVN.T.....DLKA...NL..N.WSK..LHWD.MDNDNNDT
A3KT79_PSEAI/2059-2381             LTDL.DIDFSWDQLLNAQVSVV...GRDPAGNPS..N....T.....AS.IG.VGTSI....EQP.VTIG...NFGLDVSLNPL..NPRF...GFSGTT....EPDSSV.VIRVITPALN.VEL.....LPI....Q......AD.SSG.N.FSLNLL.SPTILTQLGLNITD..ILNLGSQISF.NLV...STDSNGND..............S..AA..YGITL.TPNGLSL...NIGQIDVNG............TSGD....DVLSGAN........GSS..E.HINGGDGSDLIF....NVGTG.DHVVA...GNG.NDTIQITATD.FVSIDGGA.GFDTLVL..AN.GIDLDYNAVGVGTL.....S.NLERIDL.GKGD......SG.SVLTLTAA.EVDA.IT....D..ANN.TLQITG......ENNDTLN.....VVG.AV..N...TGT.T.....QLIN...GI..T.YDVYTFGST.TLLIEDNT
A0KS56_SHESA/1499-1829             TGTV.L....PDGTY..PVVAT...VTDVAGNSK..T.V..T.....QD.VV.IDTKIDEDGDGNTVAIT...SITQDTGSSSSDFITNDNTLVFHGTVD..LDDNSTL.AVTI.....N.GVT.....YTTANGLV......ID.AQG.N.WSVDL...TG.........T...VLPDG.TYPV.VAT...VTDVAGNS..............K..TV...TQDV.VIDTAAP...S.ATISVDN............ITAD....DILNAQEAAGNVLVTGTV.GG.DAAVGDTVTMVI....NGTTY.STQVIALVGGGLGFSVNVAGSD.L..AVDT....EFTAT..VT.GSDDAGNPF...SA.....S.TT..STH.TVDT......SASATISVDNI.TADDILN....AQEAAG.NVLVTGTVGGDAAVGDTVT.....MVI.NG..T...TYS.T.....QVIALVGGG.LG.FSVNVAGSD.LAVDTEFT
A0KNW4_AERHH/3310-3664             DNSK.VQYLGLGETR..VESFT...VKSVDGTTH..T.V..T.....IT.IT.GVND......GAVVAGDDLGAVTEDLNVVGGKLSDSG...VLTIS..D.ADQGQAK.FVAG.....N.GTPSAGALGSL....S......IT.ETG.I.WSYNV...DN.........SKVQYLGQG.ETRIETFT...VKSVDGTS..............H..TV...SVTI.TGT...N...DAPTLSIDKGAVVSEEGLAGGIAD......TAGSSDTTDSVAASGKITVG.DVDSQDTLTISL....NGPAG.LTAGG...AAV.QWSWNAATKV.LTGYTGTPGGADYKAVMDVK.LTAPAGNGK...GD....WS.Y....DV.TLKA......PL.DH....PVKGSEDVLNFQIGVTVSDG.KTTTTGSLPISVEDDSPVAGDMAAVSVIKT..NIPDTLT.GLFDLTKYSG...SN..Q.TTLNVSGFS.ITALGFTS
A3XJG3_LEEBM/338-645               PFDV......AGPAD..RIVVR...YTSLLGVNV..L.Q..K.....LDLYD.VAIT......PAIPVID...P.ASEDI....EVCAGD...SASLVATT.ASSGAEL.RWYD.....S.ASG.....GSL....L......ATTASG.E..AFTT...PT..............LTED.T.TF.YVA....SFLAGCT..............E..ESARVAVEV.TVNPL.P...ESGDITVLG............FDAPICIPEILNIV...PTTTINGDF..NYYLDANGTLPITDGLVEDGITY...SIN...ADG.ELEVEGLT......EADS....PFRVY..VS.VVDAVTGCE...NAPGDLQV.V....DI.TLDG......GPEPTITLDPV.TADNIIN....AAEAGT.TIAVSGSVGGDAEAGDPVV.....VTV.NT..F...TYN.T.....TVAG...DL..S.FSVDVAGAQ.LVADDDLS
A1WJB9_VEREI/835-1175              TPTANLQS..ASSSI..SIDLN..GLRDSAGNVN..N.G..SQSFDQST.IS.IDTK......RPEVTV....GISDNRLIAGQTATIIF...TFSERVTG.FGTED.I.QYDT.....S.KGT.....LSAL..TA......VG.ADGMV.WTATY...TP.........RS..GIQSA.DNTI.RVNLAGVLDAQGNA..............G..AGTGSSGNF.SIDTKTTEGDGPPEVTMT.............ISDT....RLTAGETATITFTFSESV..T.GFDLDDVQYDTS....KGTLDALTPVG...TDGRVWSATYTPRP.DTESANN....TIRVN.LAG.VQDAQGNAG...EG.....S.VS.SGNF.SIDTRPTEVDRP.PEVTVTI...SDNHLT....AGETATVTFTFSERVT.GFGTEDIQY.....DTS.KG..T...LGALT.....AVGT...DG..KVWSATYTPRP.NTESAENT
A1WJB9_VEREI/2164-2498             TPTA...NLQ.SASS..SISISQDGLRDSAGNVN..N.G..TQPFHDST.IS.IDTK......RPEVTVA....INDTRLTVGQTATITF...TFSERVTG.FDTGDIQ.YDTS.....K.GTL.....GAL....T.....AVG.TDGRV.WSATY...TP.........RP..DIESA.DNTI.RVNLAGVLDAQGNA..............G..TGTGSSDNF.SIDTRPPGVDRLPEVTVT.............ISDS....SLSAGQTATVTFTFRESV..T.GFGTEDIQYDTS....KGTLSALMAVG...TDGKVWTATYTPRP.DTESADN....TIRVN.LAG.VLDAQGNAGV.GTG....SS.G....NF.SIDT......KP.PEVTVTI...SDERLT....AGETATVTFTFRESVT.GFDTGDIQY.....DTS.KG..T...LGALT.....AVGT...DG.RV.WSATYTPRP.NTESADNT
A1WHL7_VEREI/1826-2150             RPN..IES..ADNTI..RVNLA..GVQDAQGNAG..T.G..SA..SSGN.FS.IDTK......PPEVTVT....ISDERLSAGQTATVTF...TFTERVTG.FGTEDIQ.YDTS.....K.GTL.....GAL....T.....AVG.TDG.KVWSATY...TP.........RS..DIESA.ENTI.RVNLAGVLDAQGNA..............G..TGSASSGNF.SIDTRP......PEVTVT.............ISDN....RLSAGQTATVTFTFNERV..T.GFDLNDVQYDTS....KGTLGALTAVG...TDGKVWTATYTPRP.DTESADN....TIRVN.LAG.VLDAQGNAG...TG.....S.VS.SGNF.SIDT......KP.PEVTVTI...SDNRLS....AGQTATVTFTFNERVT.GFDLNDVQY.....DTS.KG..T...LGALT.....AVGT...DG..KVWTATYTPRP.DIESADNT
A1WQE1_VEREI/3169-3496             TPRP.DTE.SADNTI..RVNLA..GVLDAQGNAG..T.G..SG..SSGN.FS.IDTR......PPEVTVT....ISDNRLIAGQTATVTF...TFRESVTG.FDLNDVQ.YDTS.....K.GTL.....GAL....T.....AVG.TDG.KVWSATY...TP.........RS..DIESA.ENTI.SVNLAGVRDALGNA..............GVGTG..TSGNF.SIDTKP......PEVAVT.............ISDE....RLSAGESATVTFTFSERV..T.GFDLDDVQYDTS....KGTLGALTPVG...TDGRVWSASYTPRP.GIESADN....AISVR.LAG.VRDALGNAGV.GTG....TS.G....NF.TIDT......KP.PEVTVTI...SDNRLT....AGESATVTFTFSESVT.GFTKE.AID.....LSQANG..T...LGELV.....PVGT...DG..KVWTATFTPTDRLARTTNHR
A1WHL7_VEREI/4241-4564             RPDT..E..SAENTI..SVNLA..GVRDALGNAGVGTGT..S.....GN.FS.IDTK......PPEVAVT....ISDNRLTAGESATITF...TFNERVTG.FDLDD.V.QYDT.....SKGTL.....GAL....T.....PVG.TDGRV.WSASY...TP.........RP..GIESA.DNAI.SVRLAGVRDALGNA..............GVGTG..TSGNF.TIDTKP......PEVTVT.............ISDN....RLTAGESATVTFTFSESV..T.GFTK.EAIDLSQ...ANGTLGDLVPVG...TDGKVWTATFTPTDRLARTTNH....RLTLN..LTNVRDAAGNAPAVNTY.....SFN....QY.TVDT......MV.FALSNATV.NRNQLVL....FYSD...ETALDPDQT.HNAPNDAFV.....VLV.DGVRN...NVT.G.....VVVD...AAAKT.VTLTLERA.....VSHGQ
A1WJB9_VEREI/6839-7165             TPRP.DTE.SADNTI..RVNLA..GVLDAQGNAG..T.G..SA..SSGN.FS.IDTR......PPGVTVT....ISDERLSAGETATVTF...TFRESVTG.FGTEDIQ.YDTS.....K.GTL.....GAL....T.....AVG.TDG.KVWSATY...TP.........RS..DIESA.DNTI.RVNLAGVLDAQGNA..............G..TGSVSSGNF.SIDTKR......PEVTVT.............ISDE....RLSAGETATVTFTFNERV..T.GFTK.EAIDLSQ...ANGTLGDLVPVG...TDGKAWTATFTPTASLARTTNH....RLTLN.LAN.VRDAAGNAPAVNTY.....SFN....QY.TVDT......MV.FALSSATV.NRDQLVL....SY..GH.ETALDGNAD.RAPTNESFT.....VLV.DG..T...RID.VS..RVTVDA..AAR..T.VTLTLARAV....AAGQT
A1WHL7_VEREI/961-1295              TPTANLQS..ASSLI..SINLN..DLRDSAGNVS..S.GRKSF..YDST.IV.IDTK......RPEVTVV....ISDNRLTAGETATVTF...TFSERVTG.FDLNDVQ.YDTS.....K.GTL.....GAL....T.....AVG.TDG.KVWTATY...TP.........RP..NIESA.DNTI.RVNLAGVQDAQGNA..............G..EGSVSSGNF.SIDTRPPEVDRPPEVTVT.............ISDN....RLTAGESATVTFTFSKSV..T.GFTK.DDIDLTL...ANGTLGDLVPVG...TDGKVWSATFTPRP.DTESADN....TIRVN.LAG.VLDAQGNAGV.GTG....TS.G....NF.TIDT......KR.PEVAVAI...SDERLT....AGETATVTFTFTERVT.GFDLNDVQY.....DTS.KG..T...LGALT.....AVGT...DG..KVWSATYTPRP.DTESATNT
#=GC seq_cons                      TPss..pp..ssssh..plsls...lpDssGNss..s.s..o.....ts.hs.lDTc.......PpVsls....Iocscl.sutpssssh...oFotssos.hsssshh.hsss.....s.Gsh.....GuL....o......ls.osG.p.Wossh...TP.........ps..slpsu.-soI.pVs..hVpDstGNu..............s..su..sossh.oIDTt.......PpVoVo.............Ioss....cltuGpssTsTFTFsEsV..o.GFstsDs.sho.....sGThG.LssVG...oDGhsWosshTPps..spss-s....slpVs..As.VpDAtGNAs...ou.....S.s....sa.olDT......ps.Pplolsh...uDshls....usEsus.Thshotsls.shsssDs.h.....sos.pG..s...hss.T.....sVss...su..p.aosshssts..stssssT
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