# STOCKHOLM 1.0 #=GF ID Virulence_fact #=GF AC PF13769.1 #=GF DE Virulence factor #=GF AU Eberhardt R #=GF SE Jackhmmer:A3K275 #=GF GA 25.00 25.00; #=GF TC 25.60 32.20; #=GF NC 24.30 23.20; #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq #=GF TP Family #=GF RN [1] #=GF RM 15853881 #=GF RT Silkworm pathogenic bacteria infection model for identification #=GF RT of novel virulence genes. #=GF RA Kaito C, Kurokawa K, Matsumoto Y, Terao Y, Kawabata S, Hamada S, #=GF RA Sekimizu K; #=GF RL Mol Microbiol. 2005;56:934-944. #=GF DR INTERPRO; IPR025989; #=GF CC This domain is found in conserved virulence factors [1]. It is #=GF CC often found in association with Pfam:PF02985 and Pfam:PF08712. #=GF SQ 53 #=GS B5J537_9RHOB/7-92 AC B5J537.1 #=GS A4EKT1_9RHOB/7-92 AC A4EKT1.1 #=GS Q2CHL4_9RHOB/7-92 AC Q2CHL4.1 #=GS A3VKF6_9RHOB/7-92 AC A3VKF6.1 #=GS C7D5S6_9RHOB/7-92 AC C7D5S6.1 #=GS A3VVY3_9RHOB/7-92 AC A3VVY3.1 #=GS Q0FAR3_9RHOB/7-92 AC Q0FAR3.1 #=GS A8TX49_9PROT/7-97 AC A8TX49.1 #=GS C3MDT9_RHISN/7-92 AC C3MDT9.1 #=GS Q1YME0_MOBAS/7-92 AC Q1YME0.1 #=GS A0NMK0_9RHOB/31-116 AC A0NMK0.1 #=GS Q6SFV9_9BACT/6-92 AC Q6SFV9.1 #=GS C6D0M2_PAESJ/110-188 AC C6D0M2.1 #=GS B4BMP2_9BACI/109-189 AC B4BMP2.1 #=GS Q739B1_BACC1/67-147 AC Q739B1.1 #=GS Q65IA9_BACLD/109-189 AC Q65IA9.1 #=GS B4AKS0_BACPU/109-189 AC B4AKS0.1 #=GS Q8ESW1_OCEIH/113-193 AC Q8ESW1.1 #=GS C4L599_EXISA/105-185 AC C4L599.1 #=GS A6CH78_9BACI/108-188 AC A6CH78.1 #=GS Q2B0P7_9BACI/156-236 AC Q2B0P7.1 #=GS C0ZAZ3_BREBN/110-190 AC C0ZAZ3.1 #=GS D3G0P2_BACPE/109-189 AC D3G0P2.1 #=GS Q5WGC8_BACSK/107-187 AC Q5WGC8.1 #=GS Q9KC56_BACHD/110-190 AC Q9KC56.1 #=GS D6XUV1_BACIE/109-189 AC D6XUV1.1 #=GS B4WI53_9SYNE/140-221 AC B4WI53.1 #=GS E6U073_BACCJ/109-189 AC E6U073.1 #=GS A3IE76_9BACI/108-190 AC A3IE76.1 #=GS B9EC28_MACCJ/106-185 AC B9EC28.1 #=GS C8MB03_STAAU/109-189 AC C8MB03.1 #=GS C2M0L4_STAHO/106-186 AC C2M0L4.1 #=GS CVFC_STAHJ/106-186 AC Q4L6D9.1 #=GS B9DNY1_STACT/108-188 AC B9DNY1.1 #=GS C5QSH7_STAEP/106-186 AC C5QSH7.1 #=GS C4WAB7_STAWA/106-186 AC C4WAB7.1 #=GS CVFC_STAS1/106-186 AC Q49XP0.1 #=GS D3EJ08_GEOS4/109-187 AC D3EJ08.1 #=GS C6J6W8_9BACL/110-188 AC C6J6W8.1 #=GS B7RV78_9GAMM/6-92 AC B7RV78.1 #=GS A0YBI9_9GAMM/6-92 AC A0YBI9.1 #=GS A0Z6A4_9GAMM/6-92 AC A0Z6A4.1 #=GS Q1YT99_9GAMM/6-92 AC Q1YT99.1 #=GS A8LLN8_DINSH/9-94 AC A8LLN8.1 #=GS C8RZ81_9RHOB/7-92 AC C8RZ81.1 #=GS A4ERL8_9RHOB/7-92 AC A4ERL8.1 #=GS A3SP19_9RHOB/7-92 AC A3SP19.1 #=GS A3JTW9_9RHOB/7-92 AC A3JTW9.1 #=GS Q0FQ06_9RHOB/7-92 AC Q0FQ06.1 #=GS A4WRB7_RHOS5/7-91 AC A4WRB7.1 #=GS Q28QW6_JANSC/7-92 AC Q28QW6.1 #=GS A3K275_9RHOB/8-93 AC A3K275.1 #=GS A3U427_9RHOB/9-94 AC A3U427.1 B5J537_9RHOB/7-92 VYWRDIPAQVIVGKGRR....AT.KIQLTERFEQAIDRAAMKSGAASTDDYLADWRKAA.PYPVDGIDA.DVAKSEAARLEAEYDKDRLMILI A4EKT1_9RHOB/7-92 VYWRDMPAQVIVGRGRR....GV.KLPLPERFEQAIDRAAMKSGAAQSDDYMSGFRKAD.PIPVDGTDQ.EAAAATVAKIDTDYDPERVKTLI Q2CHL4_9RHOB/7-92 VYWRDIPAQVIVGKGRR....AV.KVQLSERFEQAIDRAAMKTGAAETDAYLAEWRKAA.PVGVEGDDR.EAAEATAARLEAEYDTARLKALI A3VKF6_9RHOB/7-92 VYWRDIPAQVIVGRGRK....AA.KVPLPERFEQAIDRAAMGAGLAGTDDYLGEWRRAA.PYSVDGDDR.AVAEAEAARLDAAYDQDRLKTLI C7D5S6_9RHOB/7-92 VYWRDIPAQVIVGKGRR....AA.KVQLPERFEQAIDRAAMKIGAEDTDAYLAEWRKAA.PFSVDGDDR.EVADAQAAKIDEEYDRERIKTLI A3VVY3_9RHOB/7-92 VYWRDIPAQVIVGKGRR....GS.KVQLPERFEQAIDRAAMKCGAAGTDAYLAEWRKAD.PYPVEGEPD.AVAQSEAARIDAEFDQERIKALI Q0FAR3_9RHOB/7-92 VYWRDIPAQVIVGKGRR....AA.KKQLPERFEQAIDRAAMKTGAAGDDAYLAEWRKSK.PIEVDGDAE.EVAKSEAERINIEYDQERIKSLI A8TX49_9PROT/7-97 TYWRDIPAHVSVEKGRGRRRESA.KVELAPRFAAAIDAAAMKGGADGTDAYLAEWRRSE.PVDVPDDDMSATAASKAAAIEADWTGERLRAAI C3MDT9_RHISN/7-92 VYWRDIPAQVIIKQGRK....SA.KRELSLRFTEAIDMCAMRTGAAETDDYLAEWRKAD.PVPVSDDLE.AEADTAAAELEAAYDRERLVALV Q1YME0_MOBAS/7-92 VYWRDIPAQIVVRQGRK....SA.RRELPSRFIEAIDRCAMRVGAKDSDAYLAEWRRGS.SPAEVSDLE.AEAERLTRDIEQSYDGDRLKALV A0NMK0_9RHOB/31-116 VYWRDIPAQILVKQGRK....SA.RRELPAMFMEAIDACAMRIGAKDSDAYMAEWRRTD.PVSVSDDLE.TEADAALTDLVSAYPKERLKTLL Q6SFV9_9BACT/6-92 IKWRDIPTQVMIKKSRR....EVEKIQLNNRFMEAVDSAASVADATDADAYLTDWKNEV.IEIPDGDLK.GPVANKAAELESAFTQEILMNYV C6D0M2_PAESJ/110-188 QMYRGIPMQVRVKNGER....EA.RSALPQKFTDAVTEAA...GA....SMIRERKLEE.FGVRYGELE.EIAAEIVKELEAAYTPDRLKELI B4BMP2_9BACI/109-189 QMLYGLPMQVKLIDGER....EH.RVGLPQPFIDAVIEA.....QKYADNIVLERKWVE.KGVRYGTFD.EIGREVVDELSAAYPPERLERIV Q739B1_BACC1/67-147 QMFFTIPMQVKLTDGTT....EE.RVGLPDRFKESIMKVQMS.....APNVVKERKWVE.QSTRYGNFE.EIGKEVVEEIVAAYPEERINETV Q65IA9_BACLD/109-189 QMFSGIPMQVKLTDGER....EE.RFGLPERFQEAILKLK.....TASSNVVLERSWKE.QGVRFGDFS.EIGREVTEELEAAYDEERLRKLT B4AKS0_BACPU/109-189 QMFNGIPMQVKLTDGER....EE.RFGMPERFQAAILKL.....RSSSDNVVFERVWKE.HGVRFGDFA.DIGQEVTEELQAAYDDERLARLT Q8ESW1_OCEIH/113-193 QMFLGIPMQVKLEEDDE....EK.RFGLPEIFTNAVMDAS.....PASTNVIMDRKWVE.QHPRYGNID.EIGEEVVEELKASYDEERLQTLV C4L599_EXISA/105-185 QFVLDVPMQLKLVKGDE....EK.RIGLSKRFVDA....AMEVQAQ.VKNVIQDRRWVE.QAPRYGELD.EVSVVAQEELEAAYPEERIERIV A6CH78_9BACI/108-188 QEFKGIPMQVKLTTESE....EK.RFSLPDRFVKAVGEAQME.....GDNVVLLRKWKE.QGVRYGELE.EIGESVVEELVAAYPQERIDSMV Q2B0P7_9BACI/156-236 QMYKDIPMQIKLTDGTE....EK.RFGLPEAYVQAVREV.....QQPDDNVVMSRKWKE.FGVRYGDMD.QVGQDILEELLAAYPESRLKSLI C0ZAZ3_BREBN/110-190 QMFRGVPMQVKVTMGTE....QI.RAALPERFGQAAVRA....GS.ASPNLIMERKWVE.HGVRYGDLR.EIGEEVALEVDASYPESRVEVIV D3G0P2_BACPE/109-189 QVFKGIPMQVKLTNGEE....EK.RAGLPDRFNEAISKA.....QKPEDNVVMERKWVD.QGIRYGELD.DVAKEVVDEVSAAYSDSRLNGLV Q5WGC8_BACSK/107-187 QMFKGIPMQVKVSDGEE....EV.REGLPDRFAQAVAQAQ.....LPNDNVVLERKWEE.QAPRYGELA.TIAKEVAAEISAAYPEARLDSLI Q9KC56_BACHD/110-190 QLFKGIPMQIKLSNGEE....EV.REGLPERFANAAFAA.....QQPDDNVVLERKWVE.QGVRYGELA.DVAKDVAEEVSAAFSQERLDRLV D6XUV1_BACIE/109-189 QEFKGIPMQVKIQSADE....EH.RTGLSERFIHAVAEATM.....PDDNVVMERKWKE.KRARYGELD.EVAKAVAEEIEATYSDERIAELI B4WI53_9SYNE/140-221 QRFRGLPVQVRVTNNAE....QA.RVALSDRFNQALQRAI....AATDANYVAERVWAP.YQPQFGEVN.AIAQQVAEEIETLVDDQELTRLE E6U073_BACCJ/109-189 HKFKGIPIQVKAFSGEE....EV.RVALPNIFKEATVKAT.....LPEDNIVMQRKWVD.YRPRYGDLQ.EVADEVAEEIKASYNQERLEELI A3IE76_9BACI/108-190 QFYKQVPLQVKVFDNQR....EH.RVSCGDRFVDAFNQI...IESAVDENYIFQRKWID.YGVRYGELE.EIAEAVKQEIDVTYSVERLAEIV B9EC28_MACCJ/106-185 LEFKNIPYQIKITYRDS....EV.RKQLDLRFIDAM......LDSQNDDNVILLRRWVD.YGIRYGTDE.EIINTVKEEIDALYPDERLQELV C8MB03_STAAU/109-189 LTFKGIPYQIKLTSADQ....EL.REQLPQTYVDHMTQA.....QTEHDNIVFMRKWLD.LGNRYGNIE.EVMDGVLEEVLATYPESQLPVLV C2M0L4_STAHO/106-186 LTFKNIPYQIKLTNAHE....EI.RKQLPDIFTNSMLKA.....QEDDDNVIFLRKWKE.VGLRYGELS.LVMEEVYEEIIALYPKSRLEQLV CVFC_STAHJ/106-186 LMFKGIPYQIKLTTTSD....ES.RKQLPDYFVESMLKA.....QKDGDNVVFLRKWQD.LGVRYGDLE.EVMNEVYEEIIALYPSEKLASLV B9DNY1_STACT/108-188 LVFKGIPYQIKLSTTEK....EE.RKQLPAKFVDTMLDA.....QKDDDNVVFMRKWED.LGTRYGDID.EVMSEVEEEIIALYPTEKLDELL C5QSH7_STAEP/106-186 LMFKGIPYQIKLTTSKE....EK.RQQLPEIYIDKMLEA.....QKDNDNVVFLRKWED.FGIRYGDVS.EVMDDVYEEVIALYPEERLNELV C4WAB7_STAWA/106-186 LMFKGIPYQIKLSTGHD....EK.RKQLPEFYVDSMLKA.....QKDSDNVVFLRKWED.FGIRYGDID.DVMNDVYEETLALYPEERIQQLI CVFC_STAS1/106-186 LQFKGIPYQVKLTSSSE....EK.RKQLPEVYIDSMLAA.....QKDDDNIVFQRKWEN.LGIRYGELD.DIMSEVTEEILALYPEKDLNHLV D3EJ08_GEOS4/109-187 QYFRNIPMQIRVKSGNQ....EE.RIGLSERFSQAVAAV.......GTSTLIKERKLKE.YGVRYGQLE.DIARDVEQELEAAFPQERLDKVI C6J6W8_9BACL/110-188 QFFRGIPMQIRVKAGNQ....EE.RISLSERFVNAVTEVA.......SATLIKERKLVD.YGVRYGELP.DIAREIEQELEAAYPPERLKGIV B7RV78_9GAMM/6-92 VCWRDVPAQVIIKHRRK....RA.TVELSERFQKAIDKAAMRAGKADSDAYMEDWCRRSSPHAGVGSLE.DIAKNVADSIESDYSDDVLSKMV A0YBI9_9GAMM/6-92 VYWRDIPSQVIIKRGRL....RA.KAPLTQRFQVAIDRAAMTAGRGSSEAYVADWRRETTSISGDGDLG.QLAESEALMLENQYDDDRLKQLV A0Z6A4_9GAMM/6-92 VYWRDIPAQVLIKRGRD....RG.KHLLSHRFQAAIDRAAMKAGKGGSDAYLEEWRRVTTSIEAEGSVK.DIAQEFGEQIEAQYSDDDIARLV Q1YT99_9GAMM/6-92 VFWRDIPAQILVKSGRV....RG.KALLSHRFQVAIDRAAMRAGKGGSDEYLEDWRRVTSSIEGEGSPQ.ELAEQFASAIESDYSNADIAALV A8LLN8_DINSH/9-94 VYWRDIPAQVIVGKGRR....GA.KKQLSERFEQAIDRCAMKVGASGSDAYLAEWRKAA.PYPVEGEQA.EIAEAEAAKLEAAYDKARLKALI C8RZ81_9RHOB/7-92 VFWRDIPAQVIVGKGRS....AA.KVQLDQRFEKAIDRVAMKIGAKDADAYMAEWRKAP.PFAIDGEPA.AIAAAEAARLEALYDDARLKALI A4ERL8_9RHOB/7-92 VYWRDIPAQVIVGKGRR....GA.KRQLEERFEQAIDRAAMKVNAKDSDAYLAEWRKAD.PYAVEGDAS.EIAESEAKRLEAEYDQSRLKILI A3SP19_9RHOB/7-92 VYWRDIPAQVIVGKGRR....GA.KKPLPERFEQAIDRAAMKVGAQDTDAYLAEWRKAA.PVQIEGDPA.EIVEAEVARLDAEYDQERIKQLI A3JTW9_9RHOB/7-92 VYWRDIPAQVIVGKGRR....AA.KKTLPERFEQAIDRCAMKVGAKDADAYLADWRKAE.PVKMDGEGT.AILDSEVARLDAEYDQNRIKELI Q0FQ06_9RHOB/7-92 VYWRDIPAQVLVGRGRR....GA.KAPLPERFEQAIDRAAMKVGASDTDAYLAEWRRAS.GGEADGEPQ.ALAEATAARLEHDYDDARLRALI A4WRB7_RHOS5/7-91 VYWRDIPAQVIVGRGRK....GT.KRPLPERFEQAIDRCAMKIGARDSDAYMAEWRKAS..HEAEGEPE.ALARATAERLEADYDSARLRALI Q28QW6_JANSC/7-92 VFWRDIPAQVIIGKGRS....GA.KAPLPERFEQAIDRAAMKVGAKDDDAYLAGFHRVI.VGEADGDLK.EAAAAEAAKLDAAYDTTRLKTLI A3K275_9RHOB/8-93 VYWRDIPAQVIVGKGRR....GA.KAQLPERFEQAIDRAAMKSGAAETDAYLAEWRKAP.SGEVAGDPQ.EAAADAAARLDAEYDTERLKTLI A3U427_9RHOB/9-94 VCWRDIPAQVIVGKGRK....AA.KAVLPERFEQAIDRAAMKGGASETDDYLAEWRKLP.LPPQEGDPS.DVAAREIARLDAEYDQDRLKALI #=GC seq_cons lha+sIPhQVhlspGcc....ps.+htLP-RFppAls+As....ttssDshlt-h+hs-..sst.G-hp.-lAcssspcl-AsYsp-RLcpLl //