# STOCKHOLM 1.0
#=GF ID   HERV-K_env_2
#=GF AC   PF13804.1
#=GF DE   Retro-transcribing viruses envelope glycoprotein
#=GF AU   Coggill P
#=GF SE   Jackhmmer:P61569
#=GF GA   19.40 19.40;
#=GF TC   23.30 22.20;
#=GF NC   18.20 17.10;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   12970426
#=GF RT   Survey of human genes of retroviral origin: identification and
#=GF RT   transcriptome of the genes with coding capacity for complete
#=GF RT   envelope proteins.
#=GF RA   de Parseval N, Lazar V, Casella JF, Benit L, Heidmann T;
#=GF RL   J Virol. 2003;77:10414-10422.
#=GF CC   This family comes from human endogenous retrovirus K envelope
#=GF CC   glycoproteins.
#=GF SQ   16
#=GS B1P6V7_9RETR/2-171    AC B1P6V7.1
#=GS Q27VD2_9RETR/2-170    AC Q27VD2.1
#=GS B1P6X2_9RETR/2-171    AC B1P6X2.1
#=GS Q27VC4_9RETR/2-171    AC Q27VC4.1
#=GS Q07DS2_PANTR/114-283  AC Q07DS2.1
#=GS ENK3_HUMAN/114-283    AC O71037.2
#=GS Q27VJ4_9RETR/99-268   AC Q27VJ4.1
#=GS Q27VH7_9RETR/99-268   AC Q27VH7.1
#=GS Q27V83_9RETR/2-171    AC Q27V83.1
#=GS B1P744_9RETR/2-171    AC B1P744.1
#=GS B1P745_9RETR/2-171    AC B1P745.1
#=GS Q27VB5_9RETR/2-171    AC Q27VB5.1
#=GS Q27V89_9RETR/2-171    AC Q27V89.1
#=GS B1P747_9RETR/2-171    AC B1P747.1
#=GS B1P6W9_9RETR/2-171    AC B1P6W9.1
#=GS B1P731_9RETR/2-171    AC B1P731.1
B1P6V7_9RETR/2-171               TPVTWMDNPIEVYVNDSEWVPGPTDDRCPAKPEEEGMMINISIGYRYPPICLGRAPGCLMAAVQNWLVEVPTVSPISRFTYHMVSGMSLRPRVNYLQDFPYQRSLKFRPKGKPCPKEIPKESKNTEVLVWEECVANSAVILQNNEFGTIIDWAPRGQFDHNCSGQTQLCP
Q27VD2_9RETR/2-170               TPVTWMDNPIEVYVNDSVRVPGPTDDRCPIKPEEEGIMINISTGYRYP.ICLGRAPGCLIHAVQNWLVEVPTVSPNGRFTYHMVSGMSLRPRVNYLQDFSYQRSLKFRPKGKPCPKEIPKESKNTEVLVWEECVANSAVILQNNEFGTIIDWAPRGQFYHNCSGQTQSCP
B1P6X2_9RETR/2-171               TPVTWMDNPIEVYVNDSVWVPGPTDDRCPAKPEEEGMMINISIGYCYPPICLVRALGCLMPAVQNWLVEVPTVSPISRFTYHMVSGMSLRPRVNYLQDFSYQRSLKFRPKGKPCPKEIPKESKNTEVLVWEECVANSAVILQNNKFGAIIDWAPRGQFYHNCSGQTQSCP
Q27VC4_9RETR/2-171               TPLTWMDNPIEVYVNDSVWVHGPTDDRCPAKPEEEGMMTNISTGYHYPPICLGRALGCLMPAVQNWLVEVPTVSPISRFTYHMVSGMSLRPRVNNLQDFPYQRSLKFRPKGKPCPKEIPKESKNTEVLVWEECVANSAVILQNNEFGTIIDWAPRGQFYHNCSGQTQSCP
Q07DS2_PANTR/114-283             QAVTWMDNPIEVYVNDSVWVPGPTDDRCPAKPEEEGMMINISIGYCYPPICLGRAPGCLMPAVQNWLVEVPTVSPISRFTSYMVSGMSLRPRVNYLQDFSYQRSLKFRPKGKPCPKEIPKESKNTEVLVWEECVANSAVILQNNEFGTVIDWAPRGQFYHDCTGQTQSCP
ENK3_HUMAN/114-283               RAVTWMDNPIEVYVNDSVWVPGPTDDHCPAKPEEEGMMINISIGYRYPPICLGRAPGCLMPAVQNWLVEVPTVSPISRFTYHMVSGMSLRPRVNYLQDFSYQRSFKFRPKGKPCPKEIPKESKNTEVLVWEECVANSAVILQNNEFGTIIDWAPRGQFYHNCSGQTQSCP
Q27VJ4_9RETR/99-268              RAVTWMDNPTEVYVNDSVWVPGPIDNRCPAKPEEEGMMINISIGYHYPPICLGRAPGRLMPAVQNWLVEVPTVSPICRFTYHMVSGMSLGPRVNYLQDFSYQRSLKFRPKGKPCPKEIPKESKNTEVLVWEECVANSAVILQNNEFGTIIDWAPRGQFYHNCSGQTQSCP
Q27VH7_9RETR/99-268              RAVTWMDNPIEVYVNDSVWVPGPIDDRCPAKPEEEGMMINISIGYRYPPICLGRAPGCLMPAVQNWLVEVPIVSPICRFTYHMVSGMSLRPWVNYLQDFSYQGSLKFRPKGKPCPKEIPKESKNTEVLVWEECVANSAVILQNDEFGTIIDWTPQGQFYHNCSGQTQSCP
Q27V83_9RETR/2-171               TPVTWMDNPIEIYVNDSVWVPGPTDDHCPAKPEEEGMMINISIGYHYPPICLGRAPGCLMPAVQNWLVEVPTVSPISRFTYPLVSGMSLRPRVNYLQDFSYQRSLKFRPKGKPCPKEIPKGSKNTEVLVWEECVANSAVILQNSEFGTIIDWAPRGQFYHNCAGQTQSCP
B1P744_9RETR/2-171               TPLTWMDNPIEVYVNDSVWVPGPTDDRCPAKPEEEGMMINISIGYRYPPICLGRAPGCLMSAVQNWLVEVPTVSPISRFTYHMVSGMSLRPRVNYLQDFSYQRSLKFRPKGKPCPKEIPKGSKNTEVLVWEECVANSAVILQNNEFRTVIDWAPRGQFYHNCSGQTQSCP
B1P745_9RETR/2-171               TPVTWMDNPIEVYVNDSVWVPGPTDDRCPAKPEEEGMMINISIGYRYPPICLGRAPGCLMPAFQNWLVEVPTAGPNSRLTYHMVSGMSLRPRVNYLQDFSYQRSLKFRPKGKPCPKEIPKGSKNTEVLVWEECVDNSAVILQNNEFGTIIDWAPRGQFYHNCSGQTQSCP
Q27VB5_9RETR/2-171               TPLTWMDNPIELNVKDSVWVPGPTDDHCPAKPEEEGMMINISIGYRYPPICLGRAPGCLMPAFQNWLVEVPTAGPNSRLTYHMVSGMSLRPRVNYLQDFSYQRSLKFRPKGKSCPKEIPKGSKNTEVLVWEECVANSAVILQNNEFRTVIDWAPRGQFYHNCSGQTQSCP
Q27V89_9RETR/2-171               TPLTWMDNPIELNVKDSVWLPGPTDDHCPAKPEEEGMMINISIGYRYSPICLGRAPGCLMPAFQNWLVEVPTVSPISRFTYHMVSGMSLRPRVNYLQDFSYQRSLKFRPKGKTCPKEIPKESKNTEVLVWEECVANSVVILQNNEFGTIIDWAPRGQFYHNCSGQTQSCP
B1P747_9RETR/2-171               TPLTWMDNPIELNVKDSVWVPGPTDDRCPAKPEEEGMMINISIGYRYSPICLGRAPGCLMPAFQNWLVEVPTVGPNGRFTYHMVSGMSLRPRVNYLQDFSYQRSLKFRPKGKPCPKEIPKESKNTEVLVWEECVANSAVILQNNEFGTIIDWAPRGQFDHNCSGQTQLCP
B1P6W9_9RETR/2-171               TPVTWMDNPIEVYVNDSVWVPGPIDDRCPAKPEEEGMVINISIGYRYPPICLGTAPGCLMPAVQNWLVEVPTVSPISRFTYHMVSGMSLRPRVNYLQDFSYQRSLKFRPKGKTCPKEIPKESKNTEVLVWEECVANSVVILQNNEFGTIIDWAPRGQFYHNCSGQTQSCP
B1P731_9RETR/2-171               TLVTWMDNPIEVYVNDSVWVPGPTDDRCPAKPEEEGMMINISIGYHYPPICLGRAPGCLMPAVQNWLVEVPTVSPNSRFTYHMVSGMSLRPRVNCLQGFSYQRSLKFRPKGKTCPKEIPKGSKNTEVLVWEECVANSVVILQNNEFGTIIDWAPRGQFYHNCSGQTQSCP
#=GC seq_cons                    TPVTWMDNPIEVYVNDSVWVPGPTDDRCPAKPEEEGMMINISIGYRYPPICLGRAPGCLMPAVQNWLVEVPTVSPISRFTYHMVSGMSLRPRVNYLQDFSYQRSLKFRPKGKPCPKEIPKESKNTEVLVWEECVANSAVILQNNEFGTIIDWAPRGQFYHNCSGQTQSCP
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