HMMER3/b [3.0 | March 2010] NAME PPR_3 ACC PF13812.1 DESC Pentatricopeptide repeat domain LENG 34 ALPH amino RF no CS no MAP yes DATE Thu Oct 11 23:34:26 2012 NSEQ 132 EFFN 132.000000 CKSUM 3664586739 GA 27.00 10.00; TC 27.00 10.00; NC 26.90 9.90; BM hmmbuild HMM.ann SEED.ann SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq STATS LOCAL MSV -7.4256 0.73821 STATS LOCAL VITERBI -7.9866 0.73821 STATS LOCAL FORWARD -3.2181 0.73821 HMM A C D E F G H I K L M N P Q R S T V W Y m->m m->i m->d i->m i->i d->m d->d COMPO 2.25199 4.16416 3.12545 2.76771 3.29265 3.06578 3.63418 3.02605 2.95816 2.24034 3.19317 3.29413 3.25916 3.19140 2.80292 2.78688 2.82492 2.69429 4.53697 3.27041 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00031 8.47183 9.19417 0.61958 0.77255 0.00000 * 1 1.99319 3.56931 3.89627 3.14244 4.76184 3.98548 4.83811 2.81963 5.08472 1.85054 2.69001 6.57919 2.83635 3.89771 3.06082 3.20343 2.23139 1.83602 7.83452 4.49643 1 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00031 8.47183 9.19417 0.61958 0.77255 0.48576 0.95510 2 2.62581 7.99070 2.88300 2.00318 2.71077 2.87409 3.16280 2.81664 3.15949 2.91048 4.75631 4.38282 4.41417 3.38001 2.36714 3.19855 3.25945 2.09671 5.27806 3.07341 2 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00646 8.47183 5.07854 0.61958 0.77255 0.48576 0.95510 3 2.99632 3.74901 3.40291 7.01759 3.21264 5.21402 2.34071 3.61394 6.81102 2.23512 4.37957 5.19053 4.94009 6.94957 4.49006 1.57808 1.14984 2.93860 7.70732 6.53047 3 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00031 8.46568 9.18803 0.61958 0.77255 0.92805 0.50306 4 5.72217 4.75439 7.69949 7.08442 1.75360 4.90198 3.84911 4.28514 6.86562 1.88703 3.89696 7.05779 7.25533 4.50384 4.57785 6.20424 5.95429 4.51470 2.72932 0.70407 4 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00031 8.46568 9.18803 0.61958 0.77255 0.28401 1.39739 5 2.33973 5.33471 2.49085 2.43217 7.36945 3.92661 4.25420 6.85635 3.57273 4.29826 4.66503 1.35431 5.21988 4.09742 2.94758 2.63158 1.64652 3.30368 8.45495 4.93489 5 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00031 8.47183 9.19417 0.61958 0.77255 0.48576 0.95510 6 1.82520 2.89280 4.93796 4.82760 5.11539 4.65473 4.10222 2.38604 3.74002 2.66264 4.25840 3.21994 3.17272 3.98438 3.40279 2.07257 1.73301 2.92394 5.25439 3.18894 6 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00031 8.47183 9.19417 0.61958 0.77255 0.48576 0.95510 7 2.86695 4.58258 7.70042 7.08417 3.51283 6.89239 7.22712 1.86397 6.86567 0.99723 2.57064 7.06001 7.25551 6.99374 4.35341 6.20452 3.27790 1.54506 7.71572 3.51487 7 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00031 8.47183 9.19417 0.61958 0.77255 0.48576 0.95510 8 2.45294 7.12280 7.73471 7.11961 4.00430 6.92924 7.26573 1.07481 6.90235 1.19677 2.28220 7.09695 7.29028 7.02991 6.90535 3.67397 4.52942 2.32848 7.75157 4.83310 8 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00284 8.47183 5.94301 0.61958 0.77255 0.48576 0.95510 9 2.70076 5.01427 2.32277 2.76271 3.92768 4.00156 4.32850 6.85184 1.98956 2.22069 7.05993 2.66833 6.67400 3.31595 2.57507 2.82345 1.88661 3.66916 3.77845 3.71768 9 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00031 8.46930 9.19165 0.61958 0.77255 0.69197 0.69433 10 0.86684 2.96586 6.73485 4.50587 4.18981 2.58772 3.68703 3.65716 3.84139 2.69893 4.13610 3.86536 7.05648 3.13348 4.06808 2.72473 3.21430 2.93820 7.85875 3.55904 10 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00031 8.46930 9.19165 0.61958 0.77255 0.69197 0.69433 11 2.19359 2.26718 4.64739 4.43469 1.94575 6.83110 3.07120 3.16687 4.73192 1.68235 3.78091 3.17944 7.19790 3.87540 5.16709 3.24204 5.92898 4.67324 2.86985 1.98903 11 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00031 8.46930 9.19165 0.61958 0.77255 0.37553 1.16130 12 1.25803 3.07301 7.68940 4.81028 2.41895 2.85533 7.21820 3.63088 5.22298 2.11406 3.85919 7.05047 7.24762 6.98407 3.16598 2.13359 3.14068 2.08973 7.70840 4.66833 12 - - 2.68308 4.42340 2.76872 2.73238 3.46468 2.40627 3.72609 3.29469 2.67855 2.69469 4.24804 2.90122 2.73854 3.18261 2.89562 2.38001 2.77634 2.98633 4.58592 3.61618 0.05219 2.98093 9.19417 0.53833 0.87640 0.48576 0.95510 13 2.87329 8.02320 3.22752 2.16585 7.36967 4.93991 3.12983 5.00181 1.23435 3.34980 5.16094 2.92924 5.10755 3.45697 1.75560 2.51729 3.27324 5.03278 8.45506 4.64057 15 - - 2.68650 4.42257 2.77552 2.73155 3.46386 2.40545 3.72527 3.29386 2.67773 2.69387 4.24722 2.90379 2.73529 3.18178 2.89833 2.37919 2.77287 2.98550 4.58509 3.61535 0.02488 3.71035 9.19417 0.03865 3.27248 0.48576 0.95510 14 1.85504 3.39008 3.64009 4.31690 2.99227 4.14202 4.20992 3.51620 3.84068 3.22049 3.72892 2.92497 4.36869 3.02800 1.72427 1.68407 3.02161 3.80661 5.27557 3.93872 17 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00031 8.47183 9.19417 0.61958 0.77255 0.48576 0.95510 15 2.92614 4.59427 4.17515 4.36412 7.36937 0.76148 2.61966 6.85626 2.99497 4.14562 7.06333 2.82185 2.92094 2.63703 3.17318 3.33329 4.88535 3.54621 8.45491 7.04318 18 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00031 8.47183 9.19417 0.61958 0.77255 0.48576 0.95510 16 3.70392 8.02233 1.74463 2.58246 4.84766 6.28281 3.57250 4.19184 3.12648 3.58555 4.26134 2.29581 4.99036 2.65752 1.74376 1.85901 3.15479 3.72372 8.45443 4.52498 19 - - 2.68841 4.42448 2.77743 2.72822 3.46577 2.40736 3.72718 3.28193 2.67964 2.69578 4.24913 2.90570 2.73435 3.18370 2.90024 2.36999 2.77743 2.98742 4.58700 3.61726 0.06723 2.73470 9.19417 0.95108 0.48829 0.48576 0.95510 17 3.13086 7.64054 3.97607 3.81829 2.26601 4.62440 3.59817 2.88523 3.23832 2.63267 3.77081 3.45568 1.52533 5.00285 2.82475 3.13433 3.28449 2.07300 3.30929 3.66054 23 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00031 8.47183 9.19417 0.61958 0.77255 0.48576 0.95510 18 2.30794 5.40748 1.62472 1.47945 4.84775 4.61636 3.24434 6.85633 2.46754 3.59095 5.12623 2.87444 4.49716 2.43615 3.09227 3.04318 4.59003 4.13577 4.15218 5.25975 24 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00031 8.47183 9.19417 0.61958 0.77255 0.48576 0.95510 19 1.80041 8.02289 2.49054 2.47920 7.36920 2.85589 6.46958 6.85605 2.76852 1.96982 3.26147 3.31774 6.67615 2.75642 2.23467 2.41377 3.79052 3.09514 8.45483 7.04313 25 - - 2.67007 4.42903 2.78197 2.73801 3.47032 2.40570 3.71580 3.29020 2.67808 2.69911 4.24239 2.90153 2.74232 3.18824 2.88720 2.38047 2.77190 2.98127 4.59155 3.62181 0.18360 1.82113 5.13491 1.14959 0.38092 0.48576 0.95510 20 0.64113 4.10296 7.68756 7.07108 3.77931 4.35342 7.21338 3.01272 6.85233 2.93235 3.56970 7.04661 4.82075 6.98050 6.85485 3.60877 3.67744 1.59133 7.70256 3.91263 30 - - 2.68827 4.42434 2.77728 2.73332 3.46563 2.40722 3.72703 3.29563 2.66940 2.69564 4.24899 2.90556 2.72877 3.18355 2.90010 2.38096 2.76616 2.98727 4.58686 3.61712 0.05456 2.93756 9.18837 1.09029 0.40965 0.90794 0.51643 21 3.25820 3.22114 2.88259 2.23641 2.49335 5.08366 3.79058 3.26870 3.61201 1.87082 2.81706 4.30095 3.88851 2.71322 2.33666 3.32868 2.98634 3.79146 3.00076 4.34826 34 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00031 8.46603 9.18837 0.61958 0.77255 0.90794 0.51643 22 1.90991 8.01513 2.30939 2.25388 4.44150 3.67377 4.06855 4.62293 2.27526 2.48843 5.28173 3.39822 6.67120 2.34104 2.50996 3.14486 2.60255 3.54047 4.61769 3.72752 35 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00031 8.46603 9.18837 0.61958 0.77255 0.29071 1.37727 23 2.44096 4.75938 7.69308 7.07659 4.29891 6.88454 4.24438 2.08292 6.85784 1.07111 4.44599 7.05213 7.24810 4.70309 4.77562 4.07408 2.22098 1.51673 5.05290 3.74143 36 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00031 8.47183 9.19417 0.61958 0.77255 0.48576 0.95510 24 3.06365 5.08424 4.91222 4.93620 1.53954 4.76952 3.70673 2.99653 6.85746 1.06271 3.73726 7.05189 7.24803 5.25411 4.38365 6.19639 4.49536 1.93979 3.37205 2.91604 37 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00031 8.47183 9.19417 0.61958 0.77255 0.48576 0.95510 25 2.16133 5.33361 2.30229 1.83335 4.65419 2.56120 3.66535 3.65963 2.44603 4.74179 7.06343 2.94644 4.67782 3.38042 2.32988 2.18424 2.78412 4.78252 8.45500 4.63482 38 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00031 8.47183 9.19417 0.61958 0.77255 0.48576 0.95510 26 3.16671 5.37161 2.59978 1.52638 4.19309 6.28824 2.10865 3.71158 3.19890 3.24296 3.61459 3.79107 6.68153 2.31469 2.07102 3.50580 3.57334 4.62163 4.23873 2.79700 39 - - 2.68654 4.42261 2.77556 2.73160 3.46390 2.40330 3.72531 3.29390 2.67777 2.69391 4.24726 2.90383 2.73776 3.18183 2.89837 2.37923 2.77556 2.98555 4.58513 3.60921 0.02815 3.58790 9.19417 0.03442 3.38635 0.48576 0.95510 27 5.71383 4.60251 7.69311 4.71567 3.14865 6.88477 4.18897 3.08151 6.85794 2.14185 0.38302 7.05229 4.52870 4.78125 6.86053 4.57554 5.94601 3.55679 7.70829 4.71055 41 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00031 8.47183 9.19417 0.61958 0.77255 0.48576 0.95510 28 3.04971 4.24167 3.84599 1.53753 7.34850 4.14560 4.10531 2.57960 1.77901 2.93180 2.76538 5.75632 4.28064 3.11242 2.12733 3.61076 2.87457 3.25551 8.44475 5.24961 42 - - 2.68646 4.42253 2.77548 2.73151 3.46382 2.40541 3.72523 3.29382 2.67769 2.68964 4.24718 2.90375 2.73768 3.18175 2.89829 2.37915 2.77548 2.98547 4.58505 3.61531 0.02975 3.83537 4.86435 0.04347 3.15729 0.48576 0.95510 29 2.15271 8.01589 2.81404 2.18751 7.36236 4.58085 4.78067 5.09704 2.02510 3.29317 7.05618 2.97389 4.73548 1.73143 2.45285 2.62184 3.14676 4.04984 8.44774 2.81815 44 - - 2.68723 4.42330 2.77625 2.73228 3.46459 2.40618 3.72600 3.29459 2.67846 2.69282 4.24795 2.90452 2.73845 3.17430 2.89906 2.37992 2.77625 2.97461 4.58582 3.61608 0.08365 2.52390 9.18653 0.01237 4.39857 0.25812 1.48062 30 2.23712 5.27467 3.19090 2.26356 3.58536 3.52872 3.38295 3.42214 2.45187 2.25458 7.05932 3.17322 6.67740 2.10552 2.78456 2.55984 3.05808 4.77635 4.40203 2.88612 46 - - 2.68839 4.42446 2.77740 2.73344 3.45936 2.40733 3.72715 3.29346 2.67961 2.69385 4.24910 2.89806 2.73008 3.18367 2.90021 2.38107 2.77574 2.97913 4.57689 3.61239 0.09258 2.42678 9.19417 0.63467 0.75525 0.48576 0.95510 31 4.68052 8.02328 3.08070 4.22601 7.36975 0.83135 3.07426 6.85670 2.81615 5.16255 7.06358 2.07265 6.67614 2.88868 2.54057 3.09232 4.55560 4.68009 8.45513 2.93563 50 - - 2.68982 4.43097 2.75823 2.73174 3.47226 2.39781 3.71459 3.30226 2.68065 2.68107 4.24747 2.90989 2.73818 3.18309 2.90673 2.38183 2.77788 2.98627 4.59349 3.61820 0.15464 1.97198 5.49810 1.55138 0.23820 0.48576 0.95510 32 4.09906 3.40019 3.46871 4.77192 3.73944 6.87713 3.97276 1.54459 5.08756 1.41536 3.83623 7.03684 3.25417 4.03934 4.14747 3.93803 4.14930 1.33364 5.26544 5.12140 57 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00031 8.46783 9.19017 0.61958 0.77255 0.33185 1.26442 33 2.19019 8.02207 2.92082 2.03681 4.27730 3.98735 4.09334 4.57218 1.91921 4.00278 3.75443 3.62195 3.12813 2.67121 2.28546 2.85335 2.72595 2.67366 4.22248 4.91019 58 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00031 8.47183 9.19417 0.61958 0.77255 0.48576 0.95510 34 2.43368 7.16226 7.15364 4.02952 4.31348 4.18498 4.93131 4.80438 6.44598 3.82929 4.37324 4.86494 0.42355 4.71857 6.62504 3.79687 2.47564 3.44311 7.77364 6.58192 59 - - 2.68618 4.42225 2.77519 2.73123 3.46354 2.40513 3.72494 3.29354 2.67741 2.69355 4.24690 2.90347 2.73739 3.18146 2.89801 2.37887 2.77519 2.98518 4.58477 3.61503 0.00021 8.47173 * 0.61958 0.77255 0.00000 * //