# STOCKHOLM 1.0 #=GF ID AA_permease_C #=GF AC PF13906.1 #=GF DE C-terminus of AA_permease #=GF AU Coggill P #=GF SE Jackhmmer:Q7Z475 #=GF GA 27.00 27.00; #=GF TC 27.00 27.00; #=GF NC 26.90 26.90; #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq #=GF TP Domain #=GF CC This is the C-terminus of AA-permease enzymes that is not #=GF CC captured by the models Pfam:PF00324 and Pfam:PF13520. #=GF SQ 56 #=GS B6S314_9BILA/532-582 AC B6S314.1 #=GS A5C659_VITVI/553-603 AC A5C659.1 #=GS D2GAP7_STAAU/20-72 AC D2GAP7.1 #=GS D0NG02_PHYIT/81-131 AC D0NG02.1 #=GS C5KQZ0_PERM5/326-376 AC C5KQZ0.1 #=GS A9TH89_PHYPA/537-587 AC A9TH89.1 #=GS Q337V1_ORYSJ/559-609 AC Q337V1.1 #=GS C5X0K3_SORBI/540-590 AC C5X0K3.1 #=GS CAAT3_ARATH/534-584 AC Q8GYB4.1 #=GS B9I635_POPTR/565-615 AC B9I635.1 #=GS A5AI01_VITVI/90-140 AC A5AI01.1 #=GS B9IPU3_POPTR/514-564 AC B9IPU3.1 #=GS Q2HRM5_MEDTR/1-51 AC Q2HRM5.1 #=GS C0HEZ5_MAIZE/560-610 AC C0HEZ5.1 #=GS B9GED3_ORYSJ/536-586 AC B9GED3.1 #=GS CAAT4_ARATH/528-578 AC Q8W4K3.1 #=GS C5LVE9_PERM5/263-313 AC C5LVE9.1 #=GS B7QME9_IXOSC/429-479 AC B7QME9.1 #=GS B4NQ70_DROWI/627-677 AC B4NQ70.1 #=GS D2HFL8_AILME/627-677 AC D2HFL8.1 #=GS A7S2Z0_NEMVE/541-579 AC A7S2Z0.1 #=GS Q4TBZ3_TETNG/600-650 AC Q4TBZ3.1 #=GS C3XPQ7_BRAFL/527-577 AC C3XPQ7.1 #=GS A4FEQ4_SACEN/56-106 AC A4FEQ4.1 #=GS B4KYY5_DROMO/548-598 AC B4KYY5.1 #=GS B0WAU5_CULQU/549-599 AC B0WAU5.1 #=GS O44798_CAEEL/507-557 AC O44798.1 #=GS O17069_CAEEL/508-558 AC O17069.1 #=GS B4HLB6_DROSE/535-585 AC B4HLB6.1 #=GS B7ZVI8_DANRE/575-625 AC B7ZVI8.1 #=GS B5DFJ0_RAT/540-590 AC B5DFJ0.1 #=GS Q6NRJ1_XENLA/559-609 AC Q6NRJ1.1 #=GS Q4T1V2_TETNG/560-610 AC Q4T1V2.1 #=GS B4LDP2_DROVI/508-558 AC B4LDP2.1 #=GS B7P272_IXOSC/527-566 AC B7P272.1 #=GS A6QNP6_BOVIN/550-600 AC A6QNP6.1 #=GS A6QQQ5_BOVIN/550-600 AC A6QQQ5.1 #=GS Q66JW0_MOUSE/555-605 AC Q66JW0.1 #=GS D2I8B4_AILME/556-606 AC D2I8B4.1 #=GS D2I632_AILME/534-584 AC D2I632.1 #=GS Q16RD4_AEDAE/393-443 AC Q16RD4.1 #=GS B1H107_XENTR/150-200 AC B1H107.1 #=GS B2R728_HUMAN/558-608 AC B2R728.1 #=GS Q4RFQ6_TETNG/544-582 AC Q4RFQ6.1 #=GS Q4RIP7_TETNG/561-602 AC Q4RIP7.1 #=GS B9NES9_POPTR/38-66 AC B9NES9.1 #=GS C4J266_MAIZE/232-282 AC C4J266.1 #=GS Q9LD96_ORYSJ/520-570 AC Q9LD96.1 #=GS Q0DQ28_ORYSJ/515-565 AC Q0DQ28.1 #=GS A5AH87_VITVI/528-578 AC A5AH87.1 #=GS B9SAY1_RICCO/451-501 AC B9SAY1.1 #=GS B4IZ20_DROGR/535-589 AC B4IZ20.1 #=GS B0WAU2_CULQU/428-473 AC B0WAU2.1 #=GS Q6P428_XENLA/588-638 AC Q6P428.2 #=GS CTR2_CHICK/555-605 AC B3TP03.1 #=GS Q5BS75_SCHJA/157-207 AC Q5BS75.2 B6S314_9BILA/532-582 FTCPAMPLTPLLNMNIFIYLMLLQDAHDWFAYVVILIF...SLMIYFA....YSYRHS A5C659_VITVI/553-603 FSCPGVPIVPAVCIFFNIFLFAQLHYEAWVRFVILSLI...SIGIYAF....YGQYHA D2GAP7_STAAU/20-72 YKVPLYPIIPLIAILAGSFVLINTLFTQFILAIIGILITALGIPVYY.....YKKKQK D0NG02_PHYIT/81-131 FSAPLVPFIPMTCILADFYLVAQIPNLGLILGVAWVLA...GVLSYFV....YGQQHA C5KQZ0_PERM5/326-376 SRCPWVPILPAVAIWVNCYLMASLGLQALIMVTVWLIL...GIVVYLT....YGARHS A9TH89_PHYPA/537-587 FHCPWVPALPIASILVNVYLLVNLGVQTWLRVSVWMVL...GVFVYMF....YGMRHS Q337V1_ORYSJ/559-609 FMCPFVPILPVCCILINVYLLMNLGIHTWIRVSMWLAV...GAIIYVF....YGRKYS C5X0K3_SORBI/540-590 FMCPLVPLLPICCIIVNLYLLMNLGSHTWIRVSIWLVA...GALIYFF....YGLKHS CAAT3_ARATH/534-584 FICPFVPLLPIVCILINMYLLVNLGAATWVRVSVWLFL...GVVVYIF....YGRRNS B9I635_POPTR/565-615 FICPFVPLLPIVCFLVNIYLLINLGAATWTRVSVWLIV...GVLVYTF....YGRTHS A5AI01_VITVI/90-140 FICPFVPLLPIACILINVYLLVNLGSATWTRVSIWLVM...GTLVYGF....YGRRHS B9IPU3_POPTR/514-564 FVCPFVPFLPVACILVNTYLLVNLGAGTWFRVSIWLLI...GALVYLF....YGRTHS Q2HRM5_MEDTR/1-51 FACPFVPFLPAACILINTYLLIDLGVDTWLRVSVWLLI...GVLIYLF....YGRTHS C0HEZ5_MAIZE/560-610 FTCPFVPVLPVLCILINTYLLINLSGDTWMRVGIWLLL...GVLVYAF....YGRTHS B9GED3_ORYSJ/536-586 FICPFVPLLPVMCILVNTYLLVNLGGGTWMRVGVWLVM...GVFVYIF....YGRTHS CAAT4_ARATH/528-578 FLCPFVPYLPVLCILINTYLIINIGAGTWIRVLIWLLI...GSMIYIF....YGRSHS C5LVE9_PERM5/263-313 FRVPGAPEVPLIGMFVNTYMISGLPSAAVIRGLAVMLV...ATIFYLS....YSIRNS B7QME9_IXOSC/429-479 FAVPFVPYIPMFNMFVNLYLMMRLPPSTWIRFIVWMVL...GFLVYFG....YGIFNS B4NQ70_DROWI/627-677 FLTPGLPFIPAIAITVNIYLIFKLSILTLVRFTVWMSL...GFIMYFY....YGITHS D2HFL8_AILME/627-677 YMAPCLPFVPAFAMLVNIYLMLKLSTITWIRFAVWCFV...GMLIYFG....YGIWNS A7S2Z0_NEMVE/541-579 YHVPCVPLIPISSVVINEYLLTNLSKLTWASFTAWTFI...................D Q4TBZ3_TETNG/600-650 YMAPCVPFVPAAAILVNSYLMLKLSPLTWARFTVWCLI...GLLIYGC....YGMWHS C3XPQ7_BRAFL/527-577 FRLRMIPFVPALSLCLNVLLVVHLDGKTWARCATWIGI...GLLLYFG....YGFRHS A4FEQ4_SACEN/56-106 FRCPWVPFVPAVGVLSSIWLVSELTWVTWARFASWLVV...GMVVYLA....YGYRRS B4KYY5_DROMO/548-598 FKVPLVPFVPALGIFSNIMLMVHLDALTWVRFFVWVTI...GMVVYFL....YGIRHS B0WAU5_CULQU/549-599 FKVPLVPYIPALSIFCNIELMVHLSFLTWLRFFIWLSI...GMLVYFL....YGIHNS O44798_CAEEL/507-557 FKVPLVPLIPALSLLINTLMMVHLAWITWLRLVVWMSI...GFVIYFG....YGIHHS O17069_CAEEL/508-558 YKVPLVPFIPCLGLLINVFMMVYLNSMTWIRLFVWLAI...GIVIYIC....YGIRHS B4HLB6_DROSE/535-585 FKVPLVPWLPGISILINIYLMIKLDILTWIRFSIWIAI...GLAIFLA....YGIRHS B7ZVI8_DANRE/575-625 FQVPLVPFIPGFSILLNVFLMLKLSPLTWIRFTVWVAA...GLLVYFG....YGIWHS B5DFJ0_RAT/540-590 FQIPLVPLTPALSILLNLCLMLKLSYLTWLRFIFWLLV...GLVVYFG....YGIWHS Q6NRJ1_XENLA/559-609 FQVPLVPLIPALSILLNIYLMLKLNYMTWIRFSVWLAL...GLLVYFG....YGIWHS Q4T1V2_TETNG/560-610 FRVPLVPLTPGVSILINVFLMMKLSFLTWIRFTIWIAI...GLCVYFG....YGIWHS B4LDP2_DROVI/508-558 FKVPLVPFIPCLSILVNIFLMFQLMTFTWIAYTVWMIF...GYIAYFG....LMAVHF B7P272_IXOSC/527-566 YKMPLVPLLPTLSIIINATLMTTLQPLTWARLVIWIAV...G...............E A6QNP6_BOVIN/550-600 FRVPALPFLPLVSIFVNIYLMVHMTTWTWVLFGIWMGI...GFAIYFG....YGIRHK A6QQQ5_BOVIN/550-600 FRVPALPVLPLVSIFVNVYLMMQTTSATWTLFGIWNAF...GFLIYFG....YGIRHS Q66JW0_MOUSE/555-605 FKVPALPVLPALSIFVNIYLMMQMTSGTWFRFGIWMVI...GFAIYFG....YGIQHS D2I8B4_AILME/556-606 FKAPALPLLPLLSIFVNVYLMMQMTALSWAGVGVWMLI...GFAIYFG....YGIQHS D2I632_AILME/534-584 FKVPALPLLPLLSIFVNVCLLMQMTAATWARFGVWMLI...GFVIYFA....SGIHHS Q16RD4_AEDAE/393-443 FKVPLVPLLPMLSVFFNLYLMFQLDAGTWVRFAVWIVI...GYLIYFM....YGIKHS B1H107_XENTR/150-200 FKVPALPVLPLFSVFINLYFMMQLNAWTWVRFLVWMAI...GFLIYFI....YGVRNS B2R728_HUMAN/558-608 FKVPFLPVLPILSIFVNVYLMMQLDQGTWVRFAVWMLI...GFIIYFG....YGLWHS Q4RFQ6_TETNG/544-582 FKVPLLPFLPVASLFINVYLMMQLDQGTWMRFAIWMVL...................D Q4RIP7_TETNG/561-602 FKVPLLPWLPLFSIFVNIYLMMQLDMSTWVRFAVWMAI...GTA.............A B9NES9_POPTR/38-66 WGVPLMPWIPCASIFLNIFLLGSLDAT.............................IK C4J266_MAIZE/232-282 YGAPLMPWLPAMSVATNLFLMGSLGSLAYMRFGICTAA...MLVYYVL....FSVHAT Q9LD96_ORYSJ/520-570 WGVPLVPWLPSLSIATNLFLMGSLGAQAFIRFGVCTAI...MLLYYVL....VGLHAT Q0DQ28_ORYSJ/515-565 WGVPMVPWLPSASIAINVFLLGSIDSKSFMRFGIWTAA...LLVYYLF....VGLHAS A5AH87_VITVI/528-578 WGAPIVPWLPSASIAINVFILGSMDGSSFARFAVWTGI...LLVYYLF....VGLHAS B9SAY1_RICCO/451-501 WGTPLVPWLPSASIAVNVFIMGSIDGASFIRFSIWTVL...LLFYYLF....VALHAS B4IZ20_DROGR/535-589 FRVPFVPVVPAISIFINIYLMLQLNSWTWIRFGVWMIV...GIPIFIACWCLYDIRDP B0WAU2_CULQU/428-473 FRVPMVPLLPAISIFVNIYLMLMLDVYTWIRFGIWMGI...G....EL....FGLL.L Q6P428_XENLA/588-638 FMVPFLPVLPVFSVLVNVYLMVQLSGDTWIRFSIWMVI...GFLIYFA....YGIRNS CTR2_CHICK/555-605 FMVPLLPFLPSLSILVNIYLMVQLSADTWIRFSIWMAL...GFIIYFT....YGIRHS Q5BS75_SCHJA/157-207 FKVPGVPWIPALSIFINVYLMVKLSGATWVRFLVWMVV...GFTIYFG....YGYWHS #=GC seq_cons FpsPhVPhlPsluIhlNlYLhhpLsshTWlRaslWhsl...GhllYhh....YGhpHS //