# STOCKHOLM 1.0 #=GF ID DUF4250 #=GF AC PF14056.1 #=GF DE Domain of unknown function (DUF4250) #=GF AU Eberhardt R #=GF SE Jackhmmer:A7VAD8 #=GF GA 27.00 27.00; #=GF TC 30.10 37.20; #=GF NC 25.40 21.70; #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq #=GF TP Family #=GF WK Domain_of_unknown_function #=GF DR INTERPRO; IPR025346; #=GF CC This family of proteins is functionally uncharacterised. This #=GF CC family of proteins is found in bacteria. Proteins in this family #=GF CC are approximately 60 amino acids in length. There are two #=GF CC completely conserved residues (N and R) that may be functionally #=GF CC important. #=GF SQ 92 #=GS A5Z9C8_9FIRM/13-67 AC A5Z9C8.1 #=GS C4G3P7_ABIDE/3-57 AC C4G3P7.1 #=GS D4CCZ0_9CLOT/4-58 AC D4CCZ0.1 #=GS D3A9Z9_9CLOT/4-58 AC D3A9Z9.1 #=GS A8RLS2_9CLOT/4-58 AC A8RLS2.1 #=GS C0DAW5_9CLOT/4-58 AC C0DAW5.1 #=GS B0MC09_9FIRM/2-56 AC B0MC09.1 #=GS B0P008_9CLOT/2-56 AC B0P008.1 #=GS A7VH17_9CLOT/6-60 AC A7VH17.1 #=GS A8SYN3_9FIRM/6-60 AC A8SYN3.1 #=GS C4GBU2_9FIRM/4-58 AC C4GBU2.1 #=GS C7GG39_9FIRM/27-81 AC C7GG39.1 #=GS C4ZCX0_EUBR3/3-57 AC C4ZCX0.1 #=GS B0G5H7_9FIRM/3-57 AC B0G5H7.1 #=GS B0NAW5_EUBSP/8-62 AC B0NAW5.1 #=GS C0BW20_9CLOT/5-59 AC C0BW20.1 #=GS C0BC12_9FIRM/4-58 AC C0BC12.1 #=GS B6FNC1_9CLOT/5-59 AC B6FNC1.1 #=GS D4M616_9FIRM/5-59 AC D4M616.1 #=GS A7B2U9_RUMGN/5-59 AC A7B2U9.1 #=GS B5CRL3_9FIRM/5-59 AC B5CRL3.1 #=GS C0FS23_9FIRM/12-66 AC C0FS23.1 #=GS D4L6T8_9FIRM/6-60 AC D4L6T8.1 #=GS C6LJT1_9FIRM/2-56 AC C6LJT1.1 #=GS C6JEW1_9FIRM/2-56 AC C6JEW1.1 #=GS C0CP98_9FIRM/2-56 AC C0CP98.1 #=GS D4IYI0_BUTFI/9-63 AC D4IYI0.1 #=GS A5ZW31_9FIRM/2-56 AC A5ZW31.1 #=GS D4LRI5_9FIRM/2-56 AC D4LRI5.1 #=GS C9LAI2_RUMHA/2-56 AC C9LAI2.1 #=GS A6NU15_9FIRM/2-56 AC A6NU15.1 #=GS A8SFL2_9FIRM/16-70 AC A8SFL2.1 #=GS D4K3X6_9FIRM/3-57 AC D4K3X6.1 #=GS C7H5F6_9FIRM/3-57 AC C7H5F6.1 #=GS B1RPU6_CLOPF/7-61 AC B1RPU6.1 #=GS C3WEJ5_FUSMR/6-60 AC C3WEJ5.1 #=GS C6JPK3_FUSVA/6-60 AC C6JPK3.1 #=GS C0F062_9FIRM/4-58 AC C0F062.1 #=GS C1I8H6_9CLOT/7-61 AC C1I8H6.1 #=GS B2V1A5_CLOBA/8-62 AC B2V1A5.1 #=GS A6LR57_CLOB8/7-61 AC A6LR57.1 #=GS A0PYI1_CLONN/10-64 AC A0PYI1.1 #=GS A4BBC2_9GAMM/5-65 AC A4BBC2.1 #=GS A6FAU5_9GAMM/7-61 AC A6FAU5.1 #=GS B8CPV4_SHEPW/7-61 AC B8CPV4.1 #=GS A1S7J3_SHEAM/7-59 AC A1S7J3.1 #=GS A9D7H1_9GAMM/6-60 AC A9D7H1.1 #=GS A8FTU7_SHESH/8-62 AC A8FTU7.1 #=GS A8H321_SHEPA/7-61 AC A8H321.1 #=GS A3QFA2_SHELP/15-69 AC A3QFA2.1 #=GS A4SN68_AERS4/7-61 AC A4SN68.1 #=GS C4L8U0_TOLAT/7-61 AC C4L8U0.1 #=GS B1WN38_VIBF1/7-61 AC B1WN38.1 #=GS C9P449_VIBME/8-62 AC C9P449.1 #=GS C9PEG4_VIBFU/7-61 AC C9PEG4.1 #=GS Q87N98_VIBPA/21-75 AC Q87N98.1 #=GS A1SUR5_PSYIN/8-62 AC A1SUR5.1 #=GS D0IB35_VIBHO/7-61 AC D0IB35.1 #=GS D0Z241_LISDA/7-61 AC D0Z241.1 #=GS Q1Z5A0_PHOPR/14-68 AC Q1Z5A0.1 #=GS D1AL80_SEBTE/6-60 AC D1AL80.1 #=GS D0GJL9_9FUSO/5-59 AC D0GJL9.1 #=GS C9MXX1_9FUSO/5-59 AC C9MXX1.1 #=GS B5JIK1_9BACT/7-61 AC B5JIK1.1 #=GS A4SMX0_AERS4/7-61 AC A4SMX0.1 #=GS D0ICL4_VIBHO/7-61 AC D0ICL4.1 #=GS D0GS75_VIBMI/7-62 AC D0GS75.1 #=GS A6AZD4_VIBPA/7-62 AC A6AZD4.1 #=GS A5L5X1_9GAMM/7-62 AC A5L5X1.1 #=GS Q6LN44_PHOPR/7-61 AC Q6LN44.1 #=GS Q5E740_VIBF1/7-61 AC Q5E740.1 #=GS Q2C061_9GAMM/7-61 AC Q2C061.1 #=GS D9SRY9_CLOC7/9-63 AC D9SRY9.1 #=GS A5I0X8_CLOBH/9-63 AC A5I0X8.1 #=GS B1QXF9_CLOBU/7-61 AC B1QXF9.1 #=GS C2KXW4_9FIRM/3-57 AC C2KXW4.1 #=GS A6LC67_PARD8/3-57 AC A6LC67.1 #=GS A6L308_BACV8/3-57 AC A6L308.1 #=GS A7AGM8_9PORP/3-57 AC A7AGM8.1 #=GS A7VAD8_BACUN/42-96 AC A7VAD8.1 #=GS B3JJY1_9BACE/3-57 AC B3JJY1.1 #=GS A7M5R4_BACOV/3-57 AC A7M5R4.1 #=GS C6I1J6_9BACE/3-57 AC C6I1J6.1 #=GS B3CCW2_9BACE/3-57 AC B3CCW2.1 #=GS C9LGH0_9BACT/3-57 AC C9LGH0.1 #=GS D3HXG8_9BACT/4-58 AC D3HXG8.1 #=GS D1QRD9_9BACT/4-58 AC D1QRD9.1 #=GS D3I371_9BACT/4-59 AC D3I371.1 #=GS D1PAU8_9BACT/4-60 AC D1PAU8.1 #=GS A9KI54_CLOPH/2-56 AC A9KI54.1 #=GS B1BZ02_9FIRM/2-56 AC B1BZ02.1 #=GS B0N4M9_9FIRM/2-56 AC B0N4M9.1 A5Z9C8_9FIRM/13-67 LPKD.....PV.MLLSVVNTNLRDFYS.NLDEFCKAKDADKQEIIEKLKMIEYTYDEEKNQF C4G3P7_ABIDE/3-57 LPKD.....EV.ILLSYVNTKLRDFYP.SLDEFCKEVGVDRGYIIEKLGKIDYVYDERLNKF D4CCZ0_9CLOT/4-58 IPKD.....PI.MCLSFVNTKLRDSYS.SLDDFCEDFEADREELVSKLARAGYTYDREKNQF D3A9Z9_9CLOT/4-58 IPKD.....PV.MLLSFLNTQLRDYYP.SLEDCCLSLGINMEEITGGLALIGYYYNEEKNQF A8RLS2_9CLOT/4-58 IPKD.....PV.ILLSYVNTQLRDNYS.SLDEMCQALDADKSRIISVLSGIGYQYEPTQNSF C0DAW5_9CLOT/4-58 IPKD.....PV.ILLSYINTQLRDHYG.TLDEFCRSAGVQKAEIVSTLSGIGYKYEPAQNQF B0MC09_9FIRM/2-56 LPND.....PV.ILLSYINTQLRDYYD.SFEELCKSLCVDSGEISTKLSGIGYEYHPETNQF B0P008_9CLOT/2-56 IPKD.....PV.MLLSYINTQLRDFYD.SYEDLCKSLDLDQNEVKQKLSMIGYEYDESLNQF A7VH17_9CLOT/6-60 IPKD.....PV.MLLSFINMKLRDFYP.SLDELCADLNLNVNEVSEKLASAGFNYDEKLNRF A8SYN3_9FIRM/6-60 LPKD.....PM.VLLSFINTKLRDDYP.SLDELCSSLCVDADGVKKKLATIDYSYDEKKNRF C4GBU2_9FIRM/4-58 LPRD.....PV.LLLSFVNTELRDRYP.SLTRLCAAHMTNTKEIIQKLASIGYEYDEEQNQF C7GG39_9FIRM/27-81 LPND.....PA.MLLSFVNTQLRDNYP.SFSEFVAAFHVDADAITEKLKMIDYEYDETQNQF C4ZCX0_EUBR3/3-57 LPKD.....PV.MLLSFVNTQLRDNYS.GLKELAAAYDIDEKELCDKLAQIDYKYDETVNQF B0G5H7_9FIRM/3-57 LPKD.....PV.MLLSVINTELRDKYP.SLDALCEDREITKTSITDTLKGIDYEYDNIRNQF B0NAW5_EUBSP/8-62 LPKE.....PM.LLLSVVNTKIRDYYH.SLDALCEDMQVEREEITNILKGIDYEYDESRHQF C0BW20_9CLOT/5-59 LPKD.....PM.LLLSVVNTKIRDYYH.TLDAMCEDMQIDKNTIVDTLKGIDYEYDESRHQF C0BC12_9FIRM/4-58 LPKD.....PM.ILLSVVNTKLRDFYA.DLDTLCQEMQIEKKELTEKLASIDYEYDAGLNQF B6FNC1_9CLOT/5-59 LPKD.....PM.LLLSVINTKLRDYYS.NLDLLCEELQIDRKTLTKRLAEIDYEYDPAQNRF D4M616_9FIRM/5-59 LPQD.....PV.ILLSVVNTKLRDFYP.SLDQLCKEMEVNKEELTDKLDLIDYAYDASCNQF A7B2U9_RUMGN/5-59 LPKD.....PI.LLLSVVNTKLRDYYP.SLDALCDDMDVSREVLEEKLGMIDYRYDAEKNQF B5CRL3_9FIRM/5-59 LPSD.....PM.ILLSVVNTKLRDFYP.SLQALCDDMEISEAELKEKLAQIDYEYDGLKNQF C0FS23_9FIRM/12-66 IPND.....PV.MLLSFVNTQLRDYFT.TLDLFCENFNVDRSELEEKLKSIDYEYNAATNQF D4L6T8_9FIRM/6-60 IPND.....PM.ILLSFVNTKLRDFYP.SLDKMCDDLGCSKEEIESKLSAIDYKYNAELNKF C6LJT1_9FIRM/2-56 IPKD.....PM.MLLSYINTQLRDFYP.SLDALAEGLELDKDELTEKLRAIDYEYDAELNRF C6JEW1_9FIRM/2-56 IPKD.....PM.ILLSYVNTQLRDYYD.SLEALCTCRGLKKDELVAKMHSIDYEYDEATNQF C0CP98_9FIRM/2-56 IPRD.....PV.MLLSYVNTQLRDYYE.SLEALCSCRGIQKEDLLKKMEQIDYHYSEEQNQF D4IYI0_BUTFI/9-63 FPKD.....PV.MLLSVVNTALRDYYK.SFDALVEDNEVDGDDIIARLASIDYHYDSAKNQF A5ZW31_9FIRM/2-56 IPKD.....PV.MLLSYVNTQLRDYYD.SLDDFLKDKELSREGLIKKLASIDYQYDAELNQF D4LRI5_9FIRM/2-56 IPKD.....PV.MLLSYVNTQLRDFYS.SLDALCEDKELSGEEVKKKLASIDYEYDAEKNQF C9LAI2_RUMHA/2-56 IPKD.....PV.MLLSYINTQLRDFYS.SFEGLCEDKGLNAEEIQMKLSGIDYVYDLDRNQF A6NU15_9FIRM/2-56 LPQD.....PV.ILLSYLNTKLRDQYP.SLEALCDDLQADAGEITEKLKAVGYDYDPQRNQF A8SFL2_9FIRM/16-70 LPVD.....PI.MLLSVVNLKLRDQYK.DLDALCEDLEADKAGLCAKLHAVGYDYDPQRNQF D4K3X6_9FIRM/3-57 LPSD.....PI.MLLSVVNLKLRDFYP.SLDALCDDMDADRDALCKALSAVGYAYDAARNQF C7H5F6_9FIRM/3-57 LPND.....PI.MLLSMINLKLRDFYP.TLDALCEDLDEDKAALCARLSAVGYAYDPQRNQF B1RPU6_CLOPF/7-61 REMD.....PY.MLLSIINLKLRDYYS.DIESLCDDLGIEKEIIGQRLKECGYIYNRENNQF C3WEJ5_FUSMR/6-60 LMMD.....IN.IAYSMLNMRLRDKYS.SLSELCDDEDIDMEELLERMLSKGYRYDEDNNQF C6JPK3_FUSVA/6-60 LTMD.....IN.IAYSMLNMKLRDFYS.SIEELCEDEGVDKEAIISRFKDNGFIYNTSTNQF C0F062_9FIRM/4-58 LPQD.....PI.MLYSVINTKLRDFYS.SLEVLCEDMGLSEEELKEKLSSAGFEYDKDRNQF C1I8H6_9CLOT/7-61 LSMD.....PN.ILLSMINMKLRDFYS.NLSALCEDIGVTEEELKEKLNSIGYKYKRDQNQF B2V1A5_CLOBA/8-62 ISMD.....AN.LLVSIMNMKLRDNYD.SLQSLCYDLDLKEEDIVHRCKSIGYEYNKLHNQF A6LR57_CLOB8/7-61 GISD.....PN.ILLSVINMKLRDQYG.SLDILCDDLELSKDDIINILISIGYKYEEEENQF A0PYI1_CLONN/10-64 MKMD.....PY.MLLSIINMKLRDQFS.SLDDLCEDFEVTVEELKNKLNNVGYKYQSETNQF A4BBC2_9GAMM/5-65 ISEDKVLTWPGDLLLSLLNQQLRDEFK.SLEGLARYHDLSLTVLQKRLSELNLNYDPVTNQI A6FAU5_9GAMM/7-61 EQMD.....TA.ILLGIVNEKLRLECP.DLHDLSACYEMPTEALANKLYTLGYHYDTKTNQF B8CPV4_SHEPW/7-61 EQLS.....SE.TLLGIVNEKLRLTCS.SQAALFYELDIDKQLLESKLGDIGYHYDAISNQY A1S7J3_SHEAM/7-59 SQLS.....PE.ILVGIVNEKLRLQCP.DKASLLYELGMPEAELDAKLAD..FDYHPETNQY A9D7H1_9GAMM/6-60 TNLS.....SD.ILIGIVNEHLRLTCE.DKQALFYDLDIPGDQLEKKLSDAGFTYDSVSNRY A8FTU7_SHESH/8-62 EQLP.....AE.ILVGIANEHLRHNCK.DRQSLFYDLDIPSTVLEQKLSDSGFEYDILANQY A8H321_SHEPA/7-61 DTLP.....AE.ILVGIANEHLRLNCK.DQQALFYDLDISSELLEQKLAASGFEYDPGCNQY A3QFA2_SHELP/15-69 TQLS.....GD.ILVGIVNEQLRLNCH.DRQDLFYQLDIPSAQLEQKLAASGFEYDPISNQY A4SN68_AERS4/7-61 QRLD.....AN.ILLGIINEKLRLECD.GLEELLAYYDMTEDQLATRLMQIGYHYDPMSNQF C4L8U0_TOLAT/7-61 QRMD.....AN.ILLGIVNEKLRLECA.DLGELLLRYDMSQDALNKKMSSIGYHYDEMSNQF B1WN38_VIBF1/7-61 HGLE.....SG.ILLGIINEKLRLECH.SLEELSSMYELDTQGVQDKLSSLGYQYDPLTNQF C9P449_VIBME/8-62 SRLD.....DA.ILLGIVNEKLRLECD.SLGELVSMYEMNEEHVVGKLQNLGFRYDPLTNQF C9PEG4_VIBFU/7-61 GKLD.....SV.ILLGIVNEKLRLECD.SFDELVTTYEMDMNNVVDKLSGLGFRYDPLTNQF Q87N98_VIBPA/21-75 GNLD.....SI.ILLGIVNEKLRLECD.SFDELASVYEMDVESVVGKLDMLGYQYDPLTNQF A1SUR5_PSYIN/8-62 LSMD.....SE.IVFGIINERLRLECD.SLDELSHRYNLDTQALIEKLKSVGYHYNSTTNQF D0IB35_VIBHO/7-61 DSLD.....SD.IMYGIVNEKLRLECA.SLDDLVSRFDLDLQEFQAKIDAMGCYYDPLTNQL D0Z241_LISDA/7-61 LGMD.....GN.IVIGIVNERLRLECC.SMDELVSRYELDQDELTEKMAQMGYQYDPLTNQF Q1Z5A0_PHOPR/14-68 LRMD.....GN.IVFSIINEKLRLECG.SVSELVSRYELDEAELIEKMDEHGFHYDPLSNQF D1AL80_SEBTE/6-60 EKTD.....IN.ILLSIVNMKLRDDFS.DLDDFSAYYDIKKEALEERLKNHGYEYSVSNKQF D0GJL9_9FUSO/5-59 EKGD.....IN.MMLSLLNMKLRDEFS.DLERLADYYSADKNVILKRMEENGYFYNNEINQF C9MXX1_9FUSO/5-59 ETKD.....IM.LLYSLVNMKLRDEFL.DLDDLVNYYGVDKKELLDRFSAAGYEYVEGENQF B5JIK1_9BACT/7-61 QNMD.....PH.LLVGIVNTAIRNHFD.SLEELCLSHSIDRKELCEKLASGGYDYLEQAKQF A4SMX0_AERS4/7-61 ATMD.....VN.MLLSLVNMQLRDRFD.DLDDLCKAQDLDKEALVARLASGDFHYLPDQKQF D0ICL4_VIBHO/7-61 EAMD.....TI.MLMSIVNMKLRDEFS.SLNELTKYFDIDEAALKAKLATAGFEYLPEHNQF D0GS75_VIBMI/7-62 ATMD.....PI.MLMSIINMKLRDDFSGDLDKLVSYFDIDRSALEAKLASAGFEFLPQVGQF A6AZD4_VIBPA/7-62 ESMD.....PV.MLMSIVNMKLRDDFGGDLDKLVAFFDIDRAALEAKLATAGFDFLPEAGQF A5L5X1_9GAMM/7-62 EKMD.....PV.MLMSIVNMKLRDDFGGDLDRVVNFYEIDKAALIAKLESAGFEYLPEAKQF Q6LN44_PHOPR/7-61 ETMD.....PV.MLMSIVNMKMRDEFE.DLDSLINYFEIDKEILINRLKQAGFDYLPEVKQF Q5E740_VIBF1/7-61 ASMD.....PV.MLMSMVNMKIRDEFG.DLDNYVKFYELDKDALIKKLADAGFDYLEEAKQF Q2C061_9GAMM/7-61 ESMD.....PI.MLMSIVNMKIRDDFQ.DLDELVKFYDIDRQKLIDKLASAGFEYLPEAKQF D9SRY9_CLOC7/9-63 STMD.....PN.MLLSIVNMKLRDQYS.SLKDLCQAYDIDEYLLSHRLDNLGYEYDYDQNQF A5I0X8_CLOBH/9-63 RNMN.....PY.ILLSLVNTKLRDEFE.NLKDFCKTYDLKEDEIITKMKTIDYKYDSEINQF B1QXF9_CLOBU/7-61 IKMD.....SI.ILLSFINTKLRDEYS.TLNLLCCDLNLDEKLLTNKLHDVGYEYNKDINQF C2KXW4_9FIRM/3-57 IPKD.....PF.ILLSFINLKLRDEYN.SLEDLCLDLQLNKDELCQKLQAAGFEYQESQKQF A6LC67_PARD8/3-57 LPND.....PM.MLFSFINMKLRDNYS.SLDDLCEDLQVNKKSLLTKLKDAGFEYSPEHNKF A6L308_BACV8/3-57 LPDD.....PM.MLFSMVNMKLRDCYH.SLDELCDDMNVDKELLVKKLKAAGFEYSKENNKF A7AGM8_9PORP/3-57 LPED.....PM.MLFSFINMKLRDNYS.SLDELCDDMHLQKEMLVQKLKSAGFEYSQENNKF A7VAD8_BACUN/42-96 LPED.....PV.MLYSFINMKLRDFYP.SLDALCEDMNVEKEDIVRKLKLVGFEYNPAKNRF B3JJY1_9BACE/3-57 LPKD.....PM.MLFSFINMKLRDFYP.SLDALCQDMQVSKEEIVNKLKAVGFEYNPEQNKF A7M5R4_BACOV/3-57 LPKD.....PM.MLFSVINMKLRDCYS.SLDELCEDMNVDKDELVNQLKAVGFEYSVEHNKF C6I1J6_9BACE/3-57 LPED.....PM.MLFSVINMKLRDCYA.SLDELCEDMNISKDILIGKLESIGFEYNAEQNKF B3CCW2_9BACE/3-57 LPKD.....PM.MLFSFINMKLRDCYS.SLDELCDDMNVNKEMIVGKLQSAGFEYNAEHNKF C9LGH0_9BACT/3-57 LPKD.....PA.MLFSVINMKLRDNYG.SLDELCRKMDIDQDWLTQTLAAAGFEYSKANNKF D3HXG8_9BACT/4-58 LPND.....PM.ILFSTVNMLLRDDYR.SLDDLCDDMNVDRNALETKLAAVGFEYSEKNNKF D1QRD9_9BACT/4-58 LPND.....PM.ILFSAVNMLLRDNYG.SLDELCDDMNVSRDDLEKKLAAVGFKYDKKLNKF D3I371_9BACT/4-59 LPKD.....PA.ILVSSVNMLLRDEEFDSLESLCYNFNEDIEKLKANLREAGYVYSEEQHQF D1PAU8_9BACT/4-60 LPMN.....DVPMLVSAINFLLRDHEFETLDEICNHFNVNRAALEAQMATQGFEWSEQQKKF A9KI54_CLOPH/2-56 LPTD.....PI.MLLSYVNTKLRDEFQ.SLEDFCQSLDVNVVTLIDTLDKIDYHYSKERNQF B1BZ02_9FIRM/2-56 LPND.....IN.MLVSFLNTKLRDDDM.SLEHLLEINDINLNEFMTRLDRNGYFFDENNNQI B0N4M9_9FIRM/2-56 LPND.....IN.MLVSFLNTKLRDDDM.SLAQILEINDANEIEIMELLDVNGYYFDEKINQI #=GC seq_cons lshD.....Ph.hLlShlNhKLRDpas.SL-pLCpshslsccpLhpKLsslGYcYctppNQF //