# STOCKHOLM 1.0 #=GF ID YrhK #=GF AC PF14145.1 #=GF DE YrhK-like protein #=GF AU Eberhardt R #=GF SE Jackhmmer:O05401 #=GF GA 25.00 25.00; #=GF TC 25.20 25.00; #=GF NC 24.90 24.90; #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq #=GF TP Family #=GF RN [1] #=GF RM 20709900 #=GF RT Small genes under sporulation control in the Bacillus subtilis #=GF RT genome. #=GF RA Schmalisch M, Maiques E, Nikolov L, Camp AH, Chevreux B, Muffler #=GF RA A, Rodriguez S, Perkins J, Losick R; #=GF RL J Bacteriol. 2010;192:5402-5412. #=GF DR INTERPRO; IPR025424; #=GF CC The YrhK-like protein family includes the B. subtilis YrhK #=GF CC protein Swiss:O05401 which is functionally uncharacterised. Its #=GF CC expression is under the control of the motility sigma factor #=GF CC sigma-D [1]. This domain family is found in bacteria, archaea #=GF CC and eukaryotes, and is approximately 60 amino acids in length. #=GF SQ 57 #=GS C5BKW9_TERTT/22-80 AC C5BKW9.1 #=GS A1SVN0_PSYIN/23-81 AC A1SVN0.1 #=GS D4GBY7_PANAM/18-76 AC D4GBY7.1 #=GS A3WN52_9GAMM/19-77 AC A3WN52.1 #=GS D2EGK4_9EURY/15-73 AC D2EGK4.1 #=GS Q6KZL2_PICTO/232-290 AC Q6KZL2.1 #=GS Q4A0D9_STAS1/25-83 AC Q4A0D9.1 #=GS C5QN28_STAEP/29-87 AC C5QN28.1 #=GS C4W7B9_STAWA/33-91 AC C4W7B9.1 #=GS Q65GW0_BACLD/14-72 AC Q65GW0.1 #=GS YRHK_BACSU/21-79 AC O05401.1 #=GS Q2BC26_9BACI/26-84 AC Q2BC26.1 #=GS A6CI49_9BACI/33-91 AC A6CI49.1 #=GS C9A6H0_ENTCA/31-89 AC C9A6H0.1 #=GS C9BA57_ENTFC/31-89 AC C9BA57.1 #=GS D3FWN3_BACPE/27-85 AC D3FWN3.1 #=GS A7SEG5_NEMVE/111-176 AC A7SEG5.1 #=GS Q8IL91_PLAF7/183-263 AC Q8IL91.1 #=GS Q4YS49_PLABA/118-198 AC Q4YS49.1 #=GS A5K0M7_PLAVS/182-262 AC A5K0M7.1 #=GS D3EF76_GEOS4/43-101 AC D3EF76.1 #=GS D3FD53_CONWI/110-191 AC D3FD53.1 #=GS D2V1U5_NAEGR/487-548 AC D2V1U5.1 #=GS D2V5M8_NAEGR/114-176 AC D2V5M8.1 #=GS A9TW94_PHYPA/152-230 AC A9TW94.1 #=GS D0NDX4_PHYIT/107-168 AC D0NDX4.1 #=GS B7GD35_PHATC/89-148 AC B7GD35.1 #=GS A8LTS0_DINSH/11-82 AC A8LTS0.1 #=GS Q31GS0_THICR/9-69 AC Q31GS0.1 #=GS Q8CJJ0_STRCO/10-68 AC Q8CJJ0.1 #=GS Q0VL76_ALCBS/22-80 AC Q0VL76.1 #=GS A0NQI6_9RHOB/20-78 AC A0NQI6.1 #=GS A3SLW8_9RHOB/19-77 AC A3SLW8.1 #=GS A9D4X7_9RHIZ/19-77 AC A9D4X7.1 #=GS A9ELQ1_9RHOB/19-77 AC A9ELQ1.1 #=GS B7RQJ0_9RHOB/19-77 AC B7RQJ0.1 #=GS C7MCV0_BRAFD/19-77 AC C7MCV0.1 #=GS A3VBI4_9RHOB/19-77 AC A3VBI4.1 #=GS B7RGS7_9RHOB/19-77 AC B7RGS7.1 #=GS A3SG43_9RHOB/19-77 AC A3SG43.1 #=GS D0D3S8_9RHOB/19-77 AC D0D3S8.1 #=GS Q0FHT5_9RHOB/19-77 AC Q0FHT5.1 #=GS B6BBX3_9RHOB/18-76 AC B6BBX3.1 #=GS A3TVP8_9RHOB/22-80 AC A3TVP8.1 #=GS C9CSA4_9RHOB/18-76 AC C9CSA4.1 #=GS B9NW06_9RHOB/24-82 AC B9NW06.1 #=GS A3K456_9RHOB/17-75 AC A3K456.1 #=GS A3UHW4_9RHOB/20-78 AC A3UHW4.1 #=GS Q1QX77_CHRSD/24-83 AC Q1QX77.1 #=GS D0L1S5_HALNC/24-82 AC D0L1S5.1 #=GS A4FEH6_SACEN/12-70 AC A4FEH6.1 #=GS D7AZX8_NOCDD/21-79 AC D7AZX8.1 #=GS E8W4P0_STRFA/22-80 AC E8W4P0.1 #=GS C7N063_SACVD/26-84 AC C7N063.1 #=GS Q5YT36_NOCFA/33-91 AC Q5YT36.1 #=GS C6R6P2_9CORY/38-95 AC C6R6P2.1 #=GS C3PHQ9_CORA7/70-127 AC C3PHQ9.1 C5BKW9_TERTT/22-80 RRRYEVISI......................VNDFIVAVLFLVGSILFLFP.Q...RE............TAAIWLFICGSFQFLLRPTIRLIGHIH A1SVN0_PSYIN/23-81 RRRYEVISI......................INDFFIALWFLSGSVVFLYP.S...LE............KVAIWLFIIGSAQFLIRPTIRLLAHLH D4GBY7_PANAM/18-76 ARRYRALGA......................LNDLFIAIWFLTGSVLFFFD.S...LM............TGGTWLFVVGSLQLLLRPAITLAELIH A3WN52_9GAMM/19-77 QRRYEALGA......................LNDLLIAVWFLIGSFFFLNE.S...LV............DSGTWLFIVGSAQLIIKPFIKLTSLIH D2EGK4_9EURY/15-73 ERNYKALGL......................INAFMIGIEFLIGSIEFLPG.H...LN............TIGIYLFILGSFQILLVPTIRISRDIH Q6KZL2_PICTO/232-290 SSFYSMLSI......................GNDIMIGLEFIIGSFEFLPA.G...NY............ILGVYLFIAGSSQLLIRPGITIARNIH Q4A0D9_STAS1/25-83 TAIYKALYQ......................FNDVVLGLVFLIGSILFFNS.S...TV............TNGTILFVIGSIQMTIRPLIAFVHDLH C5QN28_STAEP/29-87 TTFYKALYQ......................INDIVLGLIFLVGSFFFFSD.Q...TM............VAGTILFVIGSLQMTARPVISFIHDLK C4W7B9_STAWA/33-91 TNFYKAIYQ......................VNDIVLGLVFLVGSFLFFSD.K...TV............TIGTVLFVIGSIQMTIRPVISFVHDLK Q65GW0_BACLD/14-72 KKRYKVLHT......................LNDFLIGLLFLVGSFCFFSE.E...LK............PAGLWMFVIGSFQLLIRPTIRLVHDFH YRHK_BACSU/21-79 KKRYKVLYT......................VNDFIIGAMFLVGSFFFFYD.R...LM............SAGIWLFAIGSLLLLIRPTIRLIHDFH Q2BC26_9BACI/26-84 EKRYKVLSW......................LNDFFLGVLYLIGSSLYLTD.V...DQ............RIAISFFLAGSVLMIARAVLNILKDLH A6CI49_9BACI/33-91 GNRYRIIGY......................FNDILLGILYMIGSILFITE.A...EQ............VLATSFFLGGSFMMIFRALLHILRDIH C9A6H0_ENTCA/31-89 QNRYMLISL......................TNDILTGLFYIFGSIVSLTS.L...PA............IYGTIAYLIGGVFLTIRPLIKIVRHVY C9BA57_ENTFC/31-89 QNRYTLISL......................AVDLLTGIFYIFGSLASLTK.I...PD............RYGTYFYLAGAIFLTIRPILRIVRNIF D3FWN3_BACPE/27-85 DKRYRVIST......................INDLLIGILFVIGSILNFFD.Q...AE............KIGLICYLAGSTFLVVRPVLRLMHSAS A7SEG5_NEMVE/111-176 CALYPIGCVLYPIGC................ALYPIGCVLYPIGCVLYPIGCA...LY............PIGCVLYPIGCVLYPIVCALYPIGCVL Q8IL91_PLAF7/183-263 SLFFLWGSIMFLFSIKFTQIKNVDINILVVFFSNFIGGILFTVGSVFFFYP.Q...LY............DAACYLFIIGSIIFTLAVYFDYIIYIN Q4YS49_PLABA/118-198 SSSFLIGALCFIYGIDYRQIKSIDWKVLFVYIVNLLGSVLFTIASFLFFYP.Q...FY............NYACYLYIEGSILFTLGTWFDYIIYIN A5K0M7_PLAVS/182-262 SIFFLVGAAFFIIAIDFDKIKSVDYKVLVVYVSNLVGGLLFTIASILFFYP.S...WY............NPACYMYVAGSSLFTLATWFDYIIYVG D3EF76_GEOS4/43-101 TNRYEAGMV......................ISEIATGLLFIAGSIMMFYP.Q...MK............RIPTVLYLLGSITMLLRSGLRGSYWFR D3FD53_CONWI/110-191 INTFDAMSKALSTSQMDIRVW..........GPDMIGSGCFLVASLLAFANSE...HRWLSFRPRDPDWQIAAVNL..AGSIAFGVSAVAAFVRPST D2V1U5_NAEGR/487-548 MIILEMVND......................FFLILGGLTFTIGSSLYMLN.PPILIV............IIAEVNWSVGAISYLIVSIIQYIVKQV D2V5M8_NAEGR/114-176 MISLELFND......................FTQLIGGVALTIGSSLYMVKPEPLYLV............YTAVSNWLGGSLLFLLVACIQFGMKQY A9TW94_PHYPA/152-230 FQVYENTDT............RVQFMQKTVSVPLLIANTLFLVASILSYETWT...LP...PIAKKAAVGVTAIWLAIVAAGLLLFSGIMNIIRVLE D0NDX4_PHYIT/107-168 RQVVRAFNS......................LTNYMASSIFILGALYFLPTWYPKAPE.............LGCWSFFVGCILFCAAAIVDLIFIAV B7GD35_PHATC/89-148 KSILDATAA......................ITYILGSLLFIVGSILFLPQVE...EQ............IAGAWCFITGSAVFVVGAILNAMQVFE A8LTS0_DINSH/11-82 VHQYEWVHL......................GVGMIGNALFLIGSILFLPDWA...ETQTGMLGEKVKWRTVGVWFFIAGATLMLIGSVGEVLVSLR Q31GS0_THICR/9-69 VQDYGWIHL......................SLGLFGNLMFFIGSILFLPSFE...MY...........RTLAVWLFIVGSFFMLIGSVGRLLVDLW Q8CJJ0_STRCO/10-68 LQDFPFIHL......................IIGGFGNTAFLVGSVCFLFP.S...LE............RIALWLFVLGSLGMFVGSLGEVFVRHA Q0VL76_ALCBS/22-80 VHRYQWFHV......................ILGLIGNGTFVVGSVFFLWE.S...WQ............QAGTWLFIIGSVGMLIGSIGSAIVTYE A0NQI6_9RHOB/20-78 VRKYELYRT......................VVEFLAALTFLVGSIFFLYD.G...LM............YAGTWLFVIGSVLFAVRPTVRLMLELR A3SLW8_9RHOB/19-77 YAAFEIADT......................VIAFLAAICFLIGSVMFMYD.D...WH............GVARWLFVAGSGFFCLKPTLRLVRELR A9D4X7_9RHIZ/19-77 YARFELAYT......................LVDVTAALLFVIGSIMFFSE.D...WL............TTGTWCFLVGSICFAFKPVLRIIRELR A9ELQ1_9RHOB/19-77 YAYCEIAYT......................IVDVSAAVLFVVGSVLFFQE.A...TT............YVGTWLFLIGSILFGLRPTIKLYREYT B7RQJ0_9RHOB/19-77 HATTELLYN......................FVDFLAALLFVIGSVLFFSE.S...TT............YLGTWLFLIGSILFGTRPTIKLWRELL C7MCV0_BRAFD/19-77 YALFEILHT......................IADFLAAFLFIAGSVMFFFE.Q...TK............IPGTVCFLLGSFFFAAKPSIRLVREIW A3VBI4_9RHOB/19-77 YAKYEIAYT......................VVDFIAAACFVVGSFLFFSD.A...TQ............YAATWLFVIGSFCFAAKPTIRLVREIK B7RGS7_9RHOB/19-77 YARFELAHT......................FVDFMAAVCFIVGSILFFFE.S...EQ............IPATWLFLIGSFLFAAKPTLRLVREIK A3SG43_9RHOB/19-77 YARFELAHT......................VVDFMAAFCFIVGSVMFFSD.A...WL............TPGTWLFLIGSLLFAAKPTLRLIREIK D0D3S8_9RHOB/19-77 YARFELVYT......................LVDFSAALCFTVGSVMFFSP.A...WE............IPGVWFFTVGSLFFMAKPTLRLVREVK Q0FHT5_9RHOB/19-77 YALFEIAHT......................LVDFGAAVCFTIGSVLFFWP.K...YE............TPAVWLFTVGSVLFMAKPTLRLSREIK B6BBX3_9RHOB/18-76 YAVYEIVYT......................IIDFSAALCFIIGSVFFFDE.S...LK............TAGTWLFLTGSILFAAKPTLRLVRDLR A3TVP8_9RHOB/22-80 YALFELTYT......................LVDFCAAFCFIIGSVCFFYD.S...LM............NAGTWLFLLGSVLFAVKPTLRLIREIK C9CSA4_9RHOB/18-76 YARFEIAYT......................FADFGAAFSFIVGSIFFFFE.S...LM............TAGTWLFLFGSVLFAAKPSIRLIREIK B9NW06_9RHOB/24-82 YAAYEIVYT......................IVDFAAAMLFLVGSYLFFYK.S...TT............DPAIWMFIVGSAFFGLKPTLRLIREVH A3K456_9RHOB/17-75 YGFYEKIYT......................VIDLCAGLAFLFGSILFFWE.D...TQ............YPATWLFTVGSALFVARPASRFAREYH A3UHW4_9RHOB/20-78 YALYEIGFT......................LVDVAAALSFLVGSILFFWA.E...TE............TAAIWLFVIGSLFFTAKPMIRLGREIH Q1QX77_CHRSD/24-83 HRRHELAST......................VNDLMLGLWFTIGSVCFFFQGG...VK............EAGIWLFVIGSLQLLIRPVIRLHRQLT D0L1S5_HALNC/24-82 SHRYETAIL......................FNDFLIALWFILGSAFFLIP.G...LV............TAGAWVFLIASIQFLIRPTIGLIRNIH A4FEH6_SACEN/12-70 RHRYEMASI......................VNDILIAFWFIVGSLLFFSP.L...TT............TAGVWMFLLGSIELAIRPSIRLVRHLH D7AZX8_NOCDD/21-79 RRRYEAASI......................VNDILIALWFIAGSIMFFSE.A...WT............TAGTWCFLVGSVELLIRPVIRLGRQLH E8W4P0_STRFA/22-80 KRRYEVASI......................ANDALIALWFVTGSIMFFSE.R...WT............IAGTWCFLAGSIELLVRPAIRLTRHLH C7N063_SACVD/26-84 RRRYEIISI......................GNDLLIALWFVVGSVLFFWE.S...TA............TIGTWFFLLGSIQLTARPVIRLFRRVH Q5YT36_NOCFA/33-91 NNRYESISI......................ANDVLIAVFFTAGSILQFFD.A...TV............VAGRCLFLIGSLYFLARPLIRLNRRVH C6R6P2_9CORY/38-95 KNKYETFSI......................ANDIAISVVFILGSVLTLA..G...MS............MVATVFYLLGSLGMAARPAIRLKRRTH C3PHQ9_CORA7/70-127 RNRFATASI......................AVDIAISVVFIIGSVLFLF..S...LT............KIDTVFFLLGRLAMAARPAIRLRRRMY #=GC seq_cons hppY-hhth......................lsDhhsulhFllGSlhFhhs.s...ht............hsusWlFllGSlhhhl+Psl+ll+cl+ //