# STOCKHOLM 1.0 #=GF ID RicinB_lectin_2 #=GF AC PF14200.1 #=GF DE Ricin-type beta-trefoil lectin domain-like #=GF AU Coggill P #=GF SE Jackhmmer:Q8X123 #=GF GA 35.10 35.10; #=GF TC 35.10 35.10; #=GF NC 35.00 35.00; #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq #=GF TP Domain #=GF WK Ricin #=GF DR INTERPRO; IPR000772; #=GF SQ 49 #=GS A1Z5I4_BEABA/43-129 AC A1Z5I4.1 #=GS Q8X123_9AGAR/44-154 AC Q8X123.1 #=GS Q8X123_9AGAR/44-154 DR PDB; 3EF2 A; 44-154; #=GS Q8X123_9AGAR/44-154 DR PDB; 3EF2 D; 44-154; #=GS Q8X123_9AGAR/44-154 DR PDB; 2IHO A; 44-154; #=GS Q8X123_9AGAR/44-154 DR PDB; 3EF2 C; 44-154; #=GS Q8X123_9AGAR/44-154 DR PDB; 3EF2 B; 44-154; #=GS C6L2F6_APOCT/307-416 AC C6L2F6.1 #=GS C6L2F6_APOCT/611-715 AC C6L2F6.1 #=GS A7WK54_LYSSH/385-485 AC A7WK54.1 #=GS C3I9T1_BACTU/507-614 AC C3I9T1.1 #=GS A6G9W3_9DELT/412-502 AC A6G9W3.1 #=GS A6G9W3_9DELT/550-640 AC A6G9W3.1 #=GS A7EWX9_SCLS1/45-151 AC A7EWX9.1 #=GS B2WIQ5_PYRTR/45-143 AC B2WIQ5.1 #=GS D2VXQ3_NAEGR/45-151 AC D2VXQ3.1 #=GS C4LYE8_ENTHI/157-265 AC C4LYE8.1 #=GS C4M3J3_ENTHI/137-243 AC C4M3J3.1 #=GS D2S061_HALTV/623-726 AC D2S061.1 #=GS A9E912_9FLAO/86-187 AC A9E912.1 #=GS B0MJQ2_9FIRM/249-352 AC B0MJQ2.1 #=GS C7PHL4_CHIPD/338-435 AC C7PHL4.1 #=GS A6EHX4_9SPHI/63-161 AC A6EHX4.1 #=GS C6I1A8_9BACE/97-198 AC C6I1A8.2 #=GS Q8A5P7_BACTN/65-167 AC Q8A5P7.1 #=GS A8NAT6_COPC7/44-145 AC A8NAT6.2 #=GS B5GTM6_STRCL/44-154 AC B5GTM6.1 #=GS B3PKR2_CELJU/520-621 AC B3PKR2.1 #=GS D4J5M3_9FIRM/492-590 AC D4J5M3.1 #=GS D4J5M3_9FIRM/739-837 AC D4J5M3.1 #=GS C6D9K8_PECCP/404-505 AC C6D9K8.1 #=GS D9STT7_CLOC7/601-707 AC D9STT7.1 #=GS B1VUB2_STRGG/50-155 AC B1VUB2.1 #=GS B4V2C9_9ACTO/39-139 AC B4V2C9.1 #=GS A6ERL3_9BACT/65-184 AC A6ERL3.1 #=GS C9YYM1_STRSW/484-581 AC C9YYM1.1 #=GS D1Q0S6_9BACT/375-479 AC D1Q0S6.1 #=GS B3C971_9BACE/378-483 AC B3C971.1 #=GS D2QTB1_SPILD/373-478 AC D2QTB1.1 #=GS B6SS31_MAIZE/56-169 AC B6SS31.1 #=GS C0PSY5_PICSI/62-180 AC C0PSY5.1 #=GS A8NDJ7_COPC7/40-145 AC A8NDJ7.1 #=GS A8P1Y0_COPC7/90-188 AC A8P1Y0.2 #=GS A8NDJ7_COPC7/189-287 AC A8NDJ7.1 #=GS B0DSD3_LACBS/40-138 AC B0DSD3.1 #=GS A8PCJ2_COPC7/37-137 AC A8PCJ2.2 #=GS D1BKB8_SANKS/626-731 AC D1BKB8.1 #=GS B4V8E2_9ACTO/575-676 AC B4V8E2.1 #=GS Q9L153_STRCO/584-686 AC Q9L153.1 #=GS B2ZRS9_CLINE/46-144 AC B2ZRS9.1 #=GS B2ZRS9_CLINE/46-144 DR PDB; 3NBE A; 45-143; #=GS B2ZRS9_CLINE/46-144 DR PDB; 3NBD A; 45-143; #=GS B2ZRS9_CLINE/46-144 DR PDB; 3NBC A; 45-143; #=GS B2ZRS9_CLINE/46-144 DR PDB; 3NBC B; 45-143; #=GS B2ZRS9_CLINE/46-144 DR PDB; 3NBE B; 45-143; #=GS B2ZRS9_CLINE/46-144 DR PDB; 3NBD B; 45-143; #=GS D3Q6V6_STANL/130-238 AC D3Q6V6.1 #=GS B8PDH6_POSPM/53-148 AC B8PDH6.1 #=GS B8P008_POSPM/56-152 AC B8P008.1 #=GS B8P2U3_POSPM/41-134 AC B8P2U3.1 A1Z5I4_BEABA/43-129 DNQRWTCQD..................................RRLV...NV..R....P....NLYLTFKN.LQPES.TATQEG.YC........GDGQRFQYDP.NM.....G..T.ISL.VNH...N..D....R.VVG.AWD.Q.D.............VKIVTP..DPG.DP...ARRWDIQ Q8X123_9AGAR/44-154 WHQLWLAEP...I....PN.V.......AD.....T.......FTLC...NL..F....S....GTYMDLYN.GSSEAGTAVNGW.QGTAF...TTNPHQLWTIKK.SS..D..G..TSYKI.QNY...GS.K....T.FVD.LVN.G.D.SS......DGAKIAGWTGTWDEG.NP...HQKWYFN #=GR Q8X123_9AGAR/44-154 SS TT-EEEEEE...-....TT.S.......TT.....E.......EEEE...ET..T....T....--EEEEGG.G--STTEEEEEE.---TT...---GGG-EEEEE.-T..T..S..SSEEE.EET...TT.-....-.EEE.EGG.G.-.-S......TTEEEEEE---SS--.-G...GG-EEEE C6L2F6_APOCT/307-416 LNQRWEFIY........DS.S.......KK.....A.......YKIK...SK.LN....A....NLLLSWDS.NANPKEMILRGY.TVSG......SNNQYWRIEH.VN..D..E...CYRL.RNL...ENLN....M.IVT.VQN.NFN.LL......GGKEVLVESGISTSGKDN...NQKWRMR C6L2F6_APOCT/611-715 NNQKWSFVY........DE.N.......KK.....A.......YKIK...SG.IN....S....ALWLSWDS.NAASKEILLRAY.TESG......SLNQYWRIEL.TN..D..G..S.YKL.RNL..LNL.E....K.IIA.VVN.K.N.SP......YGGKELIVS...DSN.EG...WSNWYLN A7WK54_LYSSH/385-485 RNAHWDFSY........DS.Q.......RG.....A.......YVIR...NS..Q...FH....NLVLSADS....PRTNNVFGY.PFSN......FDSQHWILET.HQ..R..G....YVF.RNF..RNR.D....L.VLH.ISG.G.N.TG......NRTNVVVYPF..F.N.SN...QQIFRLE C3I9T1_BACTU/507-614 LNAEWHFIY........EE.E.......KK.....A.......YTVW...NS.RR....P....GLVMAWND.YG..DGWNVFGT.PFER.....DKDEHYWKVKR.TS..K..G..Y.ATL.VNLK.KRN.GK..EV.VLD.VEG.G.G.TS......DGTNIMVYER..SEA.KP...QQDFKLI A6G9W3_9DELT/412-502 ASAQWELVD...I....G..........GG.....R.......YHLI...NQ..A....T....GRYLDGDG.TATLVGTSSSA............ASDDEWQLDD.FG..D..E...VFTL.YNG...SH.S....G.YLD.AN......S........NNRVYLYG....DQ.NA...DAQWRFI A6G9W3_9DELT/550-640 AKAHWRFER...I....S..........GD.....Q.......YHLV...NL..N....T....GRWLDGDG.AG....NRVGTS.SSP.......AADDVWELND.FA..S..D...VFSL.RNL...SA.N....R.WLD.A.....D.TD........DYVRLWN....DE.QD...DAQWRLI A7EWX9_SCLS1/45-151 DNAKWQVAL...V....AG.S.......GD.....SA.....EYLII...NV..H....S....GYFLTATK.ENHIVSTPQI...SP.......TDPSARWTIKP.AT..T..HQYEVFTI.NNK...VS.E....LGQLT.VKD.Y.S.TH......SGADVLSASA...KT.AD...NQKWYFD B2WIQ5_PYRTR/45-143 KNTHFEIVA...A....GG.TSAKPEIGDR.....E.......YHII...AG..N....S....GLYLACD..........VQLR.APL.......DASIRWKLAH.VG..N..G..A.....FCV...NG.K....K.QLN.VRG.A.G.KE......NGTEMIMYDM..SPK.SE...NAQFILK D2VXQ3_NAEGR/45-151 RSQFVLIKS...S....DT.G.......NN.....QND...LIVLIK...CE..A....S....GKYVCADN.GYMNEGVSIIQW.DNPA......WKNYQWIVKK.CD..H..N..S.VSL.INL...NS.Q....L.YLG.VKS.D.E.KS......NYSSIVQVNG....H.YS...SVQWLIE C4LYE8_ENTHI/157-265 KNQLFKIKQ...LE..IPG.H.......ER.....C.......IVLQ...CN..Y....S....QKYLGRKH.NKTKPGTKVTQT.N..GI...ESLEENHWELEP.VG..N..G..S.FYI.NCA...HC.N....L.RMD.VSR.K.N.TK......GLNKIICWLK.KTEN.TE...NQQFLFI C4M3J3_ENTHI/137-243 ENQMFQLIK...C....KE.P.......GH.....TC.....CVLIR...AV..H....S....GKFLGRED.GKNYFGVNVCQT.NANP.....NDETNHWFIES.FG..K..G...VYII.ICS...HA.N....L.ALD.IKG.G.S.DK......SETNVICWER...HE.EL...NQQFILQ D2S061_HALTV/623-726 SGQVWDVTE...L....E..........DG.....V.......FRIS...PA.DA....G....GLALETAD.GGTDTGTNLELG.AWED......ADHQKFEANP.IA..P..D..R.YSL.EPT...HA.D...DL.AVD.VWE.V.D.PE......PGADLRHWNV...TN.SS...NQLWKFQ A9E912_9FLAO/86-187 DNSLFKFEA...A....G..........NG.....Y.......YIIR...SK..Q....N....NKVLDIRG.GSQENNAVLQMW.DQAN......VENQKFKLSR.AT..S..D..ELYYI.TAK...HS.N....K.SIA..AG.P.G.FK......IGSTVTQKY...GDG.LS...NAMFKFI B0MJQ2_9FIRM/249-352 KHAVWYFER...R....D..........DG.....S.......YKIT...NC..K....N....NQALDVKG.CSAEPEANVQTY.ESND......TDAQRWFLYR.SG..D..G....YLL.RPK...CA.D....N.VLD.AHN.G.G.TT......AGTNIKTWIL...NE.SGAQVYKIWKLN C7PHL4_CHIPD/338-435 STGQFNVQN...I....D..........YG.....Y.......FALR...TK..G....K....KNTMTLAW.DTYYSQDTLRQA.AFSG......DDNQQWAIIP.VG..N..D..H.YKI.LSK...RN.G....K.CVE.LL.......K......DGQLAVRNEY...AG.NI...QQQWRFE A6EHX4_9SPHI/63-161 LGQVWTILP...A....K..........DG.....T.......FTIT...SS..K....Y....KSSIDNGN.RPDDEMTLMLQW.TASK.....ENPNQQFLISP.AA..D..G..T.FYI.TNR...RK.D....K.AFD.YRN.D.G.KL............IYTK.ADPE.RV...QQQWRIV C6I1A8_9BACE/97-198 ESQVWNLIP...C....G..........DG.....C.......YSIV...SP..L....T....ELGIDNSG.NG.SKECPVIQW.DPNK.....ENPNQQWRITA.LP..N..G..N.YLF.TSV...AS.G....Y.NLG.FPD.A.G.LV.......AEPVYQLKP..DAQ.KI...SQQWKIV Q8A5P7_BACTN/65-167 ESQVWNLIP...C....E..Q.......EG.....C.......YTIT...SP..L....T....QMNVDNSG.KGK.VECSVIQW.SADP.....KNPNQQWKITA.LP..N..G..N.YVL.TNV...GT.G....Y.NLG.FPD.A.G.LV.......GEPVFQLEP..EAS.KS...NQQWQIR A8NAT6_COPC7/44-145 DSQHWEIRT...S....E..L.......PN.....Q.......YTIL...NA..L....Y....RVHVTYPQ.APPAEGEFPTLE...SG......SAPQKWFIFS.SQ..N..G....YTISDNA...NR.T....S.VWN.IAG.G.A.IV......DHANIILYDY..HEF.AE...NELWNIV B5GTM6_STRCL/44-154 GPERWQLVP...V....PA.P.......QG.....GQAPDQPAYVIR...NA..V....S....GKVLDNPA.AA..D.RGIRQG.DAAA.....GKKSQQWHIVP.VE..G..E.AGLYCI.EGA...GD.R....A.VLD.LAD.P.G.PD.......DTRIVLREY..DDG.AK...SQRWRFT B3PKR2_CELJU/520-621 NCQKWTFTH...T....D..........NG.....Y.......YQVK...PL..H...NS....SACMQVSG.SSTSAGTSLVQG.SCSG.......NAAQWRLLP.QA..D..G..T.LRF.TAR...HS.G....L.SLD.IMN.C.S.IA......NGATLNQYT..WL.N.NL...CQKFSLR D4J5M3_9FIRM/492-590 PYRQFQFTY...Q....G..........NG.....Y.......YKIK...NM..G....S....GLYLSAAG.QRGSSGTNVEQS.SS..........ATLWQVLP.DG..A..G..GYYIV.PNC...SY.T....S.CLD.LYT.G.I.PD......NGKNIDLWNY...NM.RG...SQRWYLI D4J5M3_9FIRM/739-837 AFRRFKFTY...Q.......S.......NG.....Y.......YTIK...NE..G....S....GLYLSVKG.QGSASGSNVELS.SS..........ATQWQVLP.DG..T..G..SYYLV.PKC...SS.T....S.CLD.MYS.G.I.PA......NGKNIEIWNY...NM.GK...AQRWSLV C6D9K8_PECCP/404-505 DSQRFYFNA...I....G..........NG.....Y.......FNLV...NV..N....S....GKYIDIAS.SANDEGAQIIQM.YNTG......HFSQQWLILD.AG..D..G..Y.YKI.MNR...NS.G....K.LLD.ISS.R.S.TE......NGAAGIQWN...DNG.GW...NQLWKIT D9STT7_CLOC7/601-707 ATSLWRIVA.........G.D.......TG.....Y.......VNLV...AQVGS....A....SKVIDIPG.ASTDNGVQLQIW.GGTA.....GADWQQFKLKD.NG..D..G..T.FGI.LTM...IS.GG..TQ.GLD.VNA.K.S.TA......EGASVIQYNY...AA.SA...NQKWVFE B1VUB2_STRGG/50-155 ASQVWRLAP...V....HE.G.......AA.....L.......FHLV...NE..H....S....GKRLDVAG.AATENGTRIQQW.KANN......FGAQEWLIEQ.HP..EAPG..T.VTL.VSF...VS.G....L.VME.VAD.R.S.TA......AGGTVQQWED...TD.SP...FQWWRLE B4V2C9_9ACTO/39-139 AAQQWLISP...V....HS.G.......GG.....L.......FHLV...SA..H....N....GKRLDVAN.ASTDSGTRMQVW.KANA......FGAQEWIVEE.HL..D..A.PGVVSL.IAA...IS.G....L.PLE.ADE.E.G.RA...........RQ..C.EDSD.AP...SQWWRLE A6ERL3_9BACT/65-184 KHQHWKFIA...S....GD.G.......SK.....M.......YYIV...NV..SPQTKK....ANYLEVSSFEVGKNGGKVQMW.GFNGGSSSSTGANQVWIVNQ.SA..D..G..Y.YNF.TSA...HE.KGKGAY.ALE.LSG.D.DIDK......NGGRMQIWWN...KG.YK...NQKWNLI C9YYM1_STRSW/484-581 ATQYWHVV.........TK.S.......DG.....A.......VTLL...NK..S....G....GRAASVWT.GSATAGQRIGQW.VDD.......SAAGTWNVVQ.SA..D..G..H.VKL.QSA...R..N....K.SLY.LTG.A.S.PD......APLTLQNATT...DG......SQDWKLT D1Q0S6_9BACT/375-479 PHQKWTITP...A....GK.........GGYLGGPY.......YKIC...IE..G....T....TRCLTATA.GH.....DVVAKPEFTG......EDAQLWRIDQ.LT..D..G..T.YRI.MPKKVPGT.N....E.PLV.LV....S.LG......DSTPVLA.PF..DFG.SD...NSKWNFT B3C971_9BACE/378-483 PHQKWTITA...V....PN.G.......GG.....YLG..GPYYKIV...IE..G....T....NRALAATA......GAEIMTV.PEF.T....GAPEQLWRIDQ.LT..D..G..T.YRI.MPKKVPGT.D....K.ELVLVSV.G.D.ST........PSLGIFDM....N.SD...NSKWNFR D2QTB1_SPILD/373-478 PHQKWTITD...A....PD.T.......TG.....YLG..GPYYKIV...LA..G....T....DRALAA.....TTDAEVITVP.AFTG......TPEQLWRIDQ.LT..D..G..T.YRI.MPKIVPNS.G....K.KLA.LVS.S.G.DS.......TPTLAEFDF....S.SD...NSKWNFR B6SS31_MAIZE/56-169 WYKDMRFST..RV....KD.E.......EGM...PA.......FALV...NK..A....T....GLAIKHSL.GQ...SHPVKLA.PFSPD...QEDASVLWTESKDVG..K..G...FRCI.RMV..NNT.R....L.NFD.AFH.G.D.KDHG.GVHDGTAVVLWE..WCKG..E...NQSWKIL C0PSY5_PICSI/62-180 PSQQWIMDTSWSV....KA.K.......DD.....AGF...PAFALV...NK..A....T....GQALRH.G.RSEKDKVTLGPY.HPDD.....LNEAVLFTQSA.DV..G..K..GYQCI.RPV..NNT.H....L.NLD.AST.G.D.DKHHVALSEGTEIVL..C.KWNK.KE...SQKWKIS A8NDJ7_COPC7/40-145 GYQQWEARR...G.......I.......AG.....Y.......WKFR...NV..A....T....GLNLGFDV.GRIAENGTLTIG.T.........AAEFLWEVRQ.VN..A..EGRQCLHL.LVP...NT.I....Y.ALE.GSY.P.Q.RAEA..AFPFNNVQVWEY..W.K.GP...NQTWFLD A8P1Y0_COPC7/90-188 PNQKWTTNW...T....G...........K.....G.......WTLR...SV..A....S....GQYLSIAG.PP.ANGTKLVLS...........AAAFEWHIWH.DEVYP..G..V.YRI.FVP...YT.T....Q.NLD.LYNYG.D.FA......PGTPVTLWNR...WE.GA...HQLWDFD A8NDJ7_COPC7/189-287 RNQLWEATA...Y....EN.E.......KY.....M.......WSFK...NV..S....N....GHYLSISG..TAKEGTRIIGS.PTP..........FVWYIAP.DSMIT..G..A.FRM.FVP...YT.K....M.NVD.LHM.G.N.SS......PGTVIHLYK.....R.AA...KKYWRFQ B0DSD3_LACBS/40-138 DNQKWVAST...........Q.......NG.....L.......WYFK...SV..A....T....GRYLAIQG.EASDNASVVGST.NPFG...........WNIWP.DE..D..N.VNVLRI.CVP...NT.R....H.NVD.LSDHG.N.PN......PGTPITIWGR..W.K.GT...NQTWTFE A8PCJ2_COPC7/37-137 DNQHWDIEQ...T....D..........DG.....H.......FHIK...NA..E....S....GGYLAIVD.GAPGDGVDAVHW...........EDPFAWAIWP.DE.ND..D..SVWRI.GVP...DS.P....F.HLD.LTNHG.D.SA......DGTPIQVWGA...WE.GR...NQCWIFE D1BKB8_SANKS/626-731 GSQLWTAHA...L....PQ.G.......SG.....S.......HALRYVLEA..A....D....GRVLGATP.SGVALKTQSVA..DAL.......ADPSSWWALS.TT..D..G..STWSF.ASG...SR.S....L.SLE.VGG.Q.S.TA......NNAPVSLWQF...GG.GA...HQRWTVR B4V8E2_9ACTO/575-676 AAQQWNLTR...SVPGDWS.S.......TA.....A.......YRVT...NA..G....S....GRALAVAD.GA......LTLL.PPGP......SAQQQWMLSA.SG..D..G..H.YTL.INS...AD.G....T.LLD.VTG.A.S.TA......DGAPVGTYRP...NT.GR...NQSWTLR Q9L153_STRCO/584-686 SARQWRLSA...V....RH.DG....GVRD.....R.......YVFT...RP..E....D....GTRLAVRD.D.....VPVAE..PDTGR....RDRAAEWLASS.TG..D..G..T.WTL.VNS...GT.G....R.LLE.VGG.Q.A.TH......DGAAVTTWPP...NS.GA...NQRWTLT B2ZRS9_CLINE/46-144 GNQQWTLVQ...L....P..H.......TT.....I.......YTMQ...AV..N....P....QSYVRVRD.DNLVDGAALVGS.QQP..........TPVSIES.AG..N..S..GQFRI.KIP...NL.G....L.ALT.LP....S.DA......NSTPIVLGEV..DET.ST...NQLWAFE #=GR B2ZRS9_CLINE/46-144 SS TTS-EEEEE...-....T..T.......SS.....E.......EEEE...ES..S....S....--EEEEGG.G--STT-BEEEE.SS-..........--EEEEE.-S..S..T..SEEEE.EET...TT.T....E.EEE.--....-.SS......TTEE-EEEE-..-TT.-G...GG-EEEE D3Q6V6_STANL/130-238 YPKVMTWKP...V....K..........DR.....Q.......YTVG...LA..Y....TKDNWNACLTADK.PADEMGYLFAGQ.DCGKK...DNKDLQTFELSD.KG..D..K..Q.YGI.AVA...KT.G....M.CLG.PLE.E.K.AK......KGMAISTVEC...GD.DR...LQLFTLK B8PDH6_POSPM/53-148 DAQLWTVQI...V....DE.S.......KG.....H.......VKLL...NA..A....G....GTYARAPD.HI..IGGQVVG...........SNVSETFKVSE.SG.....G..K.VQI.TVI...NE.V....Y.AFS.LAN.A.A.NH........EQVKLTNP..DGS.KN...NQLWSFQ B8P008_POSPM/56-152 LNQLWTVEP...V....ACIS.......DN.....A.......WKII...NA..A....S....GTYVVAPV.HAVNQG.IVGGM.PP...........DTFTFID.NG.....G...WYQI.KLA...DE.A....L.VLY.LAN.G.D.DA......TQVTLQVAD....GS.SS...NQFWYMH B8P2U3_POSPM/41-134 LNQLWQFEK...V....G..........DN.....T.......WKIL...NA..A....S....GTYVLAPV.HAINQG..IVG.....G......TPPDVFTFID.S...D..G..S.YQI.KLA...DE.S....L.VLY...L.G.S.SA......NGTQIVLQAA..DGG.DN...NQFWYLH #=GC SS_cons TTSEEEEEE...-....TT.T.......TT.....E.......EEEE...ET..T....T....--EEEEGG.G--STTEEEEEE.SS-TT......GGG-EEEEE.-T..T..T..SCEEE.EET...TT.T....E.EEE.EGG.G.-.SS......TTEEEEEEE-.SSTT.-G...GG-EEEE #=GC seq_cons ssQpWphp....h....s..........ss.....t.......aplh...ss..s....o....uphLssss.ss.tpustltth.s.s.......sssppWplps.ss..s..G..t.apl.hsh...ss.s....h.sLc.lts.s.s.ss......susslhhaph...ts.ss...sQpWphp //