# STOCKHOLM 1.0 #=GF ID SM-ATX #=GF AC PF14438.1 #=GF DE Ataxin 2 SM domain #=GF AU Anantharaman V, Eberhardt R #=GF SE Manual #=GF GA 28.40 28.40; #=GF TC 28.40 28.40; #=GF NC 28.30 28.30; #=GF BM hmmbuild HMM.ann SEED.ann #=GF SM hmmsearch -Z 23193494 -E 1000 --cpu 4 HMM pfamseq #=GF TP Domain #=GF RN [1] #=GF RM 9462862 #=GF RT Ataxin-2, global regulators of bacterial gene expression, and #=GF RT spliceosomal snRNP proteins share a conserved domain. #=GF RA Neuwald AF, Koonin EV; #=GF RL J Mol Med 1998;76:3-5. #=GF RN [2] #=GF RM 11917006 #=GF RT Comparative genomics and evolution of proteins involved in RNA #=GF RT metabolism. #=GF RA Anantharaman V, Koonin EV, Aravind L; #=GF RL Nucleic Acids Res. 2002;30:1427-1464. #=GF DR INTERPRO; IPR025852; #=GF CC This SM domain is found in Ataxin-2 [1]. #=GF SQ 52 #=GS Q9P3K1_NEUCS/92-165 AC Q9P3K1.2 #=GS E9BAG4_LEIDB/11-89 AC E9BAG4.1 #=GS Q4D0Q9_TRYCC/10-88 AC Q4D0Q9.1 #=GS Q4PB76_USTMA/116-192 AC Q4PB76.1 #=GS Q8ILA7_PLAF7/22-97 AC Q8ILA7.2 #=GS B9PGS2_TOXGO/32-107 AC B9PGS2.1 #=GS B3RJZ6_TRIAD/63-136 AC B3RJZ6.1 #=GS A7SAG3_NEMVE/46-125 AC A7SAG3.1 #=GS E9GS99_DAPPU/50-121 AC E9GS99.1 #=GS D2A4A5_TRICA/121-194 AC D2A4A5.1 #=GS E2AAH8_CAMFO/34-101 AC E2AAH8.1 #=GS B4PRP5_DROYA/59-128 AC B4PRP5.1 #=GS E4XJQ7_OIKDI/47-119 AC E4XJQ7.1 #=GS E9QQ61_MOUSE/236-307 AC E9QQ61.1 #=GS A2CF31_DANRE/61-132 AC A2CF31.2 #=GS C9JXV8_HUMAN/121-192 AC C9JXV8.1 #=GS Q4RG15_TETNG/9-83 AC Q4RG15.1 #=GS Q6PFI6_DANRE/39-119 AC Q6PFI6.1 #=GS A8QGL3_BRUMA/12-97 AC A8QGL3.1 #=GS D8SR19_SELML/21-91 AC D8SR19.1 #=GS B1Y929_THENV/10-78 AC B1Y929.1 #=GS A8NUD4_COPC7/90-158 AC A8NUD4.2 #=GS Q0USK0_PHANO/103-187 AC Q0USK0.2 #=GS Q5BDQ5_EMENI/104-178 AC Q5BDQ5.1 #=GS B0XQ85_ASPFC/25-109 AC B0XQ85.1 #=GS Q6BJB7_DEBHA/52-137 AC Q6BJB7.2 #=GS C4YPF0_CANAW/21-94 AC C4YPF0.1 #=GS A3LNE7_PICST/2-83 AC A3LNE7.2 #=GS Q6CJX9_KLULA/42-121 AC Q6CJX9.1 #=GS Q75F67_ASHGO/41-119 AC Q75F67.1 #=GS Q6FVS9_CANGA/40-117 AC Q6FVS9.1 #=GS E7KCP4_YEASA/50-127 AC E7KCP4.1 #=GS D0MVB6_PHYIT/100-171 AC D0MVB6.1 #=GS B5YMG3_THAPS/153-230 AC B5YMG3.1 #=GS B7FW14_PHATC/78-161 AC B7FW14.1 #=GS D7FVW6_ECTSI/93-178 AC D7FVW6.1 #=GS D8TQ60_VOLCA/53-130 AC D8TQ60.1 #=GS A8JCT6_CHLRE/51-129 AC A8JCT6.1 #=GS A9V850_MONBE/3-84 AC A9V850.1 #=GS E9CID8_CAPO3/95-174 AC E9CID8.1 #=GS D3BPE8_POLPA/83-156 AC D3BPE8.1 #=GS ATX2_DICDI/83-159 AC Q55DE7.1 #=GS F0ZSI7_DICPU/73-152 AC F0ZSI7.1 #=GS Q93V36_ARATH/25-99 AC Q93V36.1 #=GS Q8RY61_ARATH/21-95 AC Q8RY61.1 #=GS D8RJA7_SELML/76-157 AC D8RJA7.1 #=GS A9TXE8_PHYPA/155-235 AC A9TXE8.1 #=GS Q94AM9_ARATH/47-126 AC Q94AM9.1 #=GS Q8L793_ARATH/50-125 AC Q8L793.1 #=GS Q01A57_OSTTA/7-78 AC Q01A57.1 #=GS C1N5K5_MICPC/11-96 AC C1N5K5.1 #=GS D2V0R5_NAEGR/134-205 AC D2V0R5.1 Q9P3K1_NEUCS/92-165 DKKSVTSSLREGQRVRITLANGSE.FEGTYANTQDPN..........TCRLTT.VTQKKLPNSAE..........MNGASRKEQGTMTFQKKEIVD E9BAG4_LEIDB/11-89 DRLEYLYLNLVGQTVLIHTVDGAL.CEGLFVSRTDADVA......ADEAGVFI.SFPRNLPSKVHS.........ALDASELSDETRLFRYEDIIM Q4D0Q9_TRYCC/10-88 DRLEYLYLNLVGQVVQVRLVDGSS.LEGIFVSRTDVDAD.......TEAGILL.CCTRCLPSSKHKP........LDPSCLELLEDTIIPYRDVVM Q4PB76_USTMA/116-192 DRMVFLLVTLVGNPVTVTVKGGSS.FFGIFSAANTEGG.........ELSVALASAQQLLPAKDKD.........SQPQLGEFKASLIINYKDLET Q8ILA7_PLAF7/22-97 DRLSYVMTCLLGNEVNVYMKDGKE.IRGLFHAYNLTAKND.....KKEIDISL.NHTRMIPK.............NENTNGPINKSMIITDNLYTT B9PGS2_TOXGO/32-107 LRLNYCMAVLAGREVRVNLENGGR.VQGLFHAYEKKDRKD.....GQEGSLVL.SCARDLPS.............KTRVSGEIKRQMHLPDRCFVS B3RJZ6_TRIAD/63-136 AHFTYHVTSLMGVLVRVVVTNGNM.FEGILRSCSP............KADIVL.NAVHRLKTSDNGN........QLRIDDNITENMIFHPKDIVH A7SAG3_NEMVE/46-125 PCFVHAVTSLIGCHVQLTAVNGSV.YDGILRTVSP............KVEVVL.DVAHLVTKKIQHGSPE..EYIQVPSKSATMDTFVIAARNIIS E9GS99_DAPPU/50-121 LRFCETITSLMGNTVQIQLSNGKI.FEGIFSTFSP............QLEVVL.ELVHTVDPSQP..........DKIDVKSVSREVVFGSQMIVM D2A4A5_TRICA/121-194 AHFMHSATLQIGNVVRIKTASGVV.WEGVFKTFSS............NFDVVL.EVAAKVDNPNSPT........QTLLADSFVDKLIFKSGDIST E2AAH8_CAMFO/34-101 AHFMHAITGHVGNVVQIQTQNGSI.YEGIFRTFSS............NFDVVL.EMAHRVE..............EKISADNIVEKLIFKSHDVVT B4PRP5_DROYA/59-128 TFFMHSATALVGSVVEVRLRSGNI.YEGVFRTFSG............NFDIAL.ELPACIKSK............NLPEEGKVPKHIIFPADTVVT E4XJQ7_OIKDI/47-119 QSLCHALTALVGTKCEVRVRNPNVTHEGFFNTFSS............DMDFAV.SAVHKVKMLGD..........GPTHKGEIIDDMIFPVNEVVS E9QQ61_MOUSE/236-307 VRMVHILTSVVGSKCEVQVKNGGI.YEGVFKTYSP............KCDLVL.DAAHEKSTESS..........SGPKREEIMESVLFKCSDFVV A2CF31_DANRE/61-132 MRMVHVLTSVVGTKCELKVKNGLI.YEGVFKTYGP............ECDIVL.DAAHRKSVEPN..........AGPRREDIVESIIFKSSDVVV C9JXV8_HUMAN/121-192 SRMLHFLTAVVGSTCDVKVKNGTT.YEGIFKTLSS............KFELAV.DAVHRKASEPA..........GGPRREDIVDTMVFKPSDVML Q4RG15_TETNG/9-83 ARMLHFLTAVVGSTCDIRVKNGNV.FEGIFKTLSS............RCELAV.DAVHKRNEEESSS.......SAPPRREDITDTMIFSPSDLVT Q6PFI6_DANRE/39-119 SRMLHFLTAVVGSRCDVMVKNGSL.YEGIFKTLSS............RCELAV.DAVHKVKNEEGDGGGG.GGTAVYPRKEEITDTMIFGPSDLVT A8QGL3_BRUMA/12-97 QELLVLITKMIGKEVLLETRDGLT.FEGIFAGCSPDVATLLDVSDNLQFDVGL.RYAHEVLTDDQKN........LLPHKDQIIEKLQIERDCIYS D8SR19_SELML/21-91 D.......SYIGSLISLTSKSDIR.YEGVLYTIDAE...........NCNIAL.QNVRSYGTEGRKKE.....GPQIPPRDSVYDYIIFRGSDIKD B1Y929_THENV/10-78 KRFVAELNNLIGREVQVVLSNGEV.YRGVLHAVDN............QLNIVLANAASKAG..............EKFVRVFIMYRYIVHIDSVEK A8NUD4_COPC7/90-158 DRVLQSLAGLTGMTVTLLTKTGQR.YEGTVSSTSNEGD.........TTGVTL.KDVKEISNP................GAPLKDSLFIASTNIDS Q0USK0_PHANO/103-187 DRMMYLLANLTGLPGIITLKNGEK.YSGVLSGTSLDPS.........ELRYVF.KMVKKLLPAANAQTNGSGEISDDYVGVGDYHVMSFDMSDVAD Q5BDQ5_EMENI/104-178 DRLVFLFTTFIGLSTTVTTKNGDQ.FTGILSSSTLEPN.........ESSVTL.KMTHRHLKQEQ..........QRANGVSDVATTLEHSSHRLG B0XQ85_ASPFC/25-109 DRLIFLLTSFIGLDATITTRSGER.FTGIFSSSSLEPH.........DSSILL.KMVQRPAKQDHQRTNGMSDVVSPFLGTAPDHSMSFDVKDVVD Q6BJB7_DEBHA/52-137 DKLLHLVAKSIGKKCIVTVSSGAR.YQGLLVSADLSSQQGQ..DVSSPLSIVL.QSPQIFSKSLIDEK......SNADKSNEIPEKLVIQAKDLMD C4YPF0_CANAW/21-94 KRLVYLTSKAMGKKCIATITDGSR.YQGLLVGSDLS...........PLSVVL.LKPQLVGSSLLN.........EKNNLDKLPENLIIQAKDLID A3LNE7_PICST/2-83 NRLLYLVTKSIGKSCVATITNGAR.YQGLLVSADLSPTG......SSALSVVL.MNPVNVGKSLIAEK......SNIDSNGDHLDKLIIQSKDLID Q6CJX9_KLULA/42-121 ERQDFLLVNGIGNRAIVTITSGVK.YEGLVAAWNPHSSG.......KGIGVVL.KYPKVLDKGFDES.......DINALSAELSETLTIEPKDVAG Q75F67_ASHGO/41-119 DRMNYVLVNSIGGRAVVTIPSGVK.YSGMLLACNATTS........NGVDVIL.KYPRIIDKGIDEE.......DAAVLSAQLKETLLIEGDDVAE Q6FVS9_CANGA/40-117 DRLDYLLVNGIGSNVKVTTTAGIQ.YEGVLAAANTEST........NGIDVVL.KHAKVIDNGMVKD........IDALAKSIEDTLLIQGEDVAE E7KCP4_YEASA/50-127 DRQDYLLANSIGSDVTVTVTSGVK.YTGLLVSCNLEST........NGIDVVL.RFPRVADSGVSDS........VDDLAKTLGETLLIHGEDVAE D0MVB6_PHYIT/100-171 HRALFAFRFLVGKAVELQLVASDDRYVGILDCVDPD...........DFSVVL.KSTKRLSSG............QNATPFEDGSTVIFRRQQLAH B5YMG3_THAPS/153-230 ERFLHLCLSMVGQTVTLTQTDGTI.LEGVFHTFAPFANQP....KHIRNTYVV.KACRVVVTK............EETSSIENGSTVLIPVEKVSH B7FW14_PHATC/78-161 ERYLGLCLNLVGHKVVVHLRDGRQ.LEGIFHTATSFASID....AKLRNQYVL.KGTQTVKATTADSK......ANTVTPIQPNATVVLDMSKVVS D7FVW6_ECTSI/93-178 DRWMNVTKTMMGERAEITTTSGCV.YEGVFHVLTPGEEPRPG.AKRGMYRVIM.RAAKVQGATDQSN.......GGQSKIDSRGGTLMLSGDDIVS D8TQ60_VOLCA/53-130 DRLGFIGNVLIGYKVEAQVSSGMV.YEGVFGSLHNDST.........GVSFIL.KYAKVIKNPTTSS.......DRNALAEKPVPILTIPAADLVQ A8JCT6_CHLRE/51-129 DRLGFIGNVLIGYRVEVQVASGVV.YEGVFGSLQNDGS.........GVSVVL.KFAKVIKDPSAPAV......DKTTLAEKPVAVLTIPAADLVQ A9V850_MONBE/3-84 DLLKFAACTMVGLPIQVQTKSGLV.YQGVLNAINVAD..........DFGVSL.CHACVKPTSNAKAPFA..DPPTVLKPSDDIEVIVIQGKDIAQ E9CID8_CAPO3/95-174 DRIAHFSSCLTGLPVYVRTKT.QI.YYGVLVSTTSEKA.........GLAVSL.RAARTVPTVPANGAQ....PTPPSTRPTLVTKLDIPAADFVE D3BPE8_POLPA/83-156 ERTVFMSMNLIGHHVAVQLKNGDC.YEGILTSTNTSQV.........GWGCAL.KFARKREVSP...........PSIITTAPIPQLVIDAKDFLG ATX2_DICDI/83-159 ERTVFMSMSLVGQNVSVTLKNGDV.YEGILHTTSTSTGSS.....GGGWGVAL.KMARKKDTN............NRVITTLPLPLVIIEAKDFLQ F0ZSI7_DICPU/73-152 ERTVYMSMSLVGQVISVTLKNGDI.YEGILSSTQTNTAGDK..GGSGGWGLVL.RMARKKDLN............NKVITTQPLPIIIIQAKDFLQ Q93V36_ARATH/25-99 EALLISTMCIIGLQVHVHINDGSV.FSGIFYTVSLEN..........EFSIVL.KNAKLTKKGRSK.........SNVESGKIVETLVILSSNIVQ Q8RY61_ARATH/21-95 SVLIAATMCIIGLQVHVHVKDGSV.FSGIFFTASVDN..........GFGIVL.KDARITKKGTSI.........SNVASGSVVDTLVILSSTIVQ D8RJA7_SELML/76-157 GRLLYLTMCLVGQFVEVQLKDGSV.FSGIFHTANMDK..........DFGVVL.KMARLTKEAGGKSGKG..DAVKQAARKPPTKSLIIYAKDLVQ A9TXE8_PHYPA/155-235 DRLVYMYTCLIGQHVDVQRIDGHV.YSGIFHAASFEK..........EIGVIL.KMARHVKEGTHPTQG...ESGREAARKPPIKKLQIQGKDIVQ Q94AM9_ARATH/47-126 DRLVYFTTCKIGHHVEVHLRNGSV.YTGIFHAANVEK..........DFGIIL.KMACLIKDGTLRGHK....SRSEFVRKPPSKTFIIPADELVQ Q8L793_ARATH/50-125 KLLVYFTTCNIGHQVEVHLKNGSV.YSGIFHAANVEK..........DFGIIL.KMACLIRDSRGTK........SRTVSKPSSKLLKIPADELVQ Q01A57_OSTTA/7-78 ERGAFARHILRGHRVEVRTVDGTT.HEGVLAKADAE...........AWTIAY.AWKKYDAGSD...........VRAQRGKPVESMTVKVSEISS C1N5K5_MICPC/11-96 ERLAFVSQVLVGYQVEVALTNGAV.YEGVFHAGSPSDDKW....EKNDFKIVL.KMAELKMHPKGADGS....APKRATRSIPSPSTTFVVADVVS D2V0R5_NAEGR/134-205 KRMFFLFLNFVGHVVEIVNVSGEV.YEGIFHTAKADSLN.......DDFVFVL.TLAKLI...............GGSGTQTIHETMTFKSKDVQQ #=GC seq_cons cRhhahhssllGppVpVplpsGsh.YcGlhpohssp...........phsllL.chs+hlsss.t..........ppstspphhcslllpspDllp //