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Browse Pfam families

New Top twenty Numbers A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
ID Accession Type Number of sequences Average length Average %id Average coverage Has 3D Change status Description
Seed Full
H-kinase_dim PF02895 Domain 148 3074 69.70 34 8.88 Changed Signal transducing histidine kinase, homodimeric domain
H-K_ATPase_N PF09040 Domain 5 35 41.00 88 4.36 Changed Gastric H+/K+-ATPase, N terminal domain
H2TH PF06831 Domain 19 5357 91.20 32 32.59 Changed Formamidopyrimidine-DNA glycosylase H2TH domain
HA PF03457 Domain 186 906 69.10 24 38.11 Changed Helicase associated domain
HA2 PF04408 Domain 140 7005 102.00 28 9.96 Changed Helicase associated domain (HA2)
HABP4_PAI-RBP1 PF04774 Family 39 511 99.40 26 29.83 Changed Hyaluronan / mRNA binding family
HAD PF12710 Family 272 9618 244.60 16 47.47 Changed haloacid dehalogenase-like hydrolase
HAD_2 PF13419 Family 169 33740 180.80 18 75.44 Changed Haloacid dehalogenase-like hydrolase
Haemadin PF09065 Domain 2 2 27.00 100 46.55 Changed Haemadin
Haemagg_act PF05860 Domain 57 2008 124.30 28 7.14 Changed haemagglutination activity domain
Haemocyan_bet_s PF14830 Family 27 179 99.90 40 24.82 New Haemocyanin beta-sandwich
Haemolytic PF01809 Family 219 3575 65.50 47 72.84 Changed Haemolytic domain
Haem_bd PF14376 Family 89 710 137.10 48 34.47 Changed Haem-binding domain
Haem_oxygenas_2 PF14518 Family 140 559 104.50 24 27.19 New Iron-containing redox enzyme
Hairpins PF04877 Family 11 233 221.70 27 93.65 Changed HrpZ
Hairy_orange PF07527 Domain 79 952 42.90 31 15.11 Changed Hairy Orange
Halogen_Hydrol PF10112 Family 20 680 187.00 27 78.74 Changed 5-bromo-4-chloroindolyl phosphate hydrolysis protein
Halo_GVPC PF05465 Repeat 29 50 32.00 32 48.53 Changed Halobacterial gas vesicle protein C (GVPC) repeat
HalX PF08663 Domain 13 74 69.40 28 34.79 Changed HalX domain
HALZ PF02183 Family 69 597 43.70 38 16.66 Changed Homeobox associated leucine zipper
Ham1p_like PF01725 Domain 110 5049 187.30 39 82.95 Changed Ham1 family
Hamartin PF04388 Family 6 205 536.20 25 62.51 Changed Hamartin protein
HAMP PF00672 Family 222 60876 70.40 19 12.75 Changed HAMP domain
HAND PF09110 Domain 29 385 101.60 46 10.01 Changed HAND
Hanta_G1 PF01567 Family 15 433 303.60 52 49.41 Changed Hantavirus glycoprotein G1
Hanta_G2 PF01561 Family 6 1286 186.40 42 58.72 Changed Hantavirus glycoprotein G2
Hanta_nucleocap PF00846 Family 4 1583 233.20 54 99.96 Changed Hantavirus nucleocapsid protein
HAP PF03866 Family 2 5 146.80 39 58.77 Changed Hydrophobic abundant protein (HAP)
HAP1_N PF04849 Family 8 271 249.20 44 35.16 Changed HAP1 N-terminal conserved region
HAP2-GCS1 PF10699 Domain 22 100 48.30 38 6.85 Changed Male gamete fusion factor
Hap4_Hap_bind PF10297 Motif 11 175 16.90 77 3.20 Changed Minimal binding motif of Hap4 for binding to Hap2/3/5
HapK PF11639 Family 4 20 102.90 37 68.24 Changed REDY-like protein HapK
Harakiri PF15196 Family 2 15 91.20 88 100.00 New Activator of apoptosis harakiri
HARE-HTH PF05066 Family 67 1524 68.90 34 20.55 Changed HB1, ASXL, restriction endonuclease HTH domain
HARP PF07443 Family 15 154 54.50 44 11.43 Changed HepA-related protein (HARP)
HAS-barrel PF09378 Domain 60 266 90.80 17 19.30 Changed HAS barrel domain
HasA PF06438 Domain 7 96 204.00 39 99.08 Changed Heme-binding protein A (HasA)
HAT PF02184 Family 3 422 32.20 46 6.81 Changed HAT (Half-A-TPR) repeat
Hat1_N PF10394 Domain 45 314 156.60 28 35.93 Changed Histone acetyl transferase HAT1 N-terminus
HATPase_c PF02518 Domain 659 129386 113.50 24 18.95 Changed Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c_2 PF13581 Domain 142 5237 122.50 20 41.79 Changed Histidine kinase-like ATPase domain
HATPase_c_3 PF13589 Domain 55 9547 137.90 25 20.93 Changed Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c_4 PF13749 Domain 156 1792 86.20 24 18.82 Changed ATP-dependent DNA helicase recG C-terminal
HATPase_c_5 PF14501 Domain 80 2619 102.70 24 25.87 New GHKL domain
HAUS-augmin3 PF14932 Family 25 132 228.30 27 43.67 New HAUS augmin-like complex subunit 3
HAUS2 PF15003 Family 7 100 194.40 34 89.31 New HAUS augmin-like complex subunit 2
HAUS4 PF14735 Family 12 109 209.10 34 62.65 New HAUS augmin-like complex subunit 4
HAUS5 PF14817 Family 8 103 479.50 25 90.83 New HAUS augmin-like complex subunit 5
HAUS6_N PF14661 Family 27 214 211.80 21 32.99 New HAUS augmin-like complex subunit 6 N-terminus
HbrB PF08539 Domain 28 284 140.30 32 25.68 Changed HbrB-like
HBS1_N PF08938 Domain 47 250 100.30 25 15.27 Changed HBS1 N-terminus
Hc1 PF07432 Family 4 147 74.90 46 96.62 Changed Histone H1-like protein Hc1
HC2 PF07382 Family 8 284 148.50 44 66.11 Changed Histone H1-like nucleoprotein HC2
HCaRG PF07258 Family 74 1021 157.10 16 82.18 Changed HCaRG protein
HCBP_related PF06594 Domain 116 953 43.60 28 9.86 Changed Haemolysin-type calcium binding protein related domain
Hce2 PF14856 Family 39 124 102.60 27 20.68 New Pathogen effector; putative necrosis-inducing factor
HCMVantigenic_N PF12154 Family 3 111 36.30 76 11.90 Changed Glycoprotein B N-terminal antigenic domain of HCMV
HCMV_UL139 PF12507 Family 8 69 103.10 56 63.02 Changed Human Cytomegalovirus UL139 protein
HCNGP PF07818 Family 22 256 94.20 34 31.46 Changed HCNGP-like protein
HCO3_cotransp PF00955 Family 18 2233 300.50 27 52.48 Changed HCO3- transporter family
HCR PF07111 Family 3 174 342.80 49 90.71 Changed Alpha helical coiled-coil rod protein (HCR)
HCV_capsid PF01543 Family 5 9598 106.30 87 18.88 Changed Hepatitis C virus capsid protein
HCV_core PF01542 Family 6 7406 59.90 89 8.38 Changed Hepatitis C virus core protein
HCV_env PF01539 Family 4 42235 72.70 67 29.80 Changed Hepatitis C virus envelope glycoprotein E1
HCV_NS1 PF01560 Family 10 44241 104.70 61 44.06 Changed Hepatitis C virus non-structural protein E2/NS1
HCV_NS2 PF01538 Family 29 2278 183.60 72 9.16 Changed Hepatitis C virus non-structural protein NS2
HCV_NS4a PF01006 Family 15 2766 54.10 82 3.25 Changed Hepatitis C virus non-structural protein NS4a
HCV_NS4b PF01001 Family 11 2035 181.50 82 8.46 Changed Hepatitis C virus non-structural protein NS4b
HCV_NS5a PF01506 Family 19 5540 22.40 82 2.09 Changed Hepatitis C virus non-structural 5a protein membrane anchor
HCV_NS5a_1a PF08300 Domain 19 5702 61.60 83 5.83 Changed Hepatitis C virus non-structural 5a zinc finger domain
HCV_NS5a_1b PF08301 Domain 20 10555 68.20 85 10.02 Changed Hepatitis C virus non-structural 5a domain 1b
HCV_NS5a_C PF12941 Family 17 15967 185.50 77 38.13 Changed HCV NS5a protein C-terminal region
HD PF01966 Family 154 24448 120.90 18 28.53 Changed HD domain
HD-ZIP_N PF04618 Domain 11 75 93.00 39 35.13 Changed HD-ZIP protein N terminus
HDA2-3 PF11496 Family 26 146 269.30 22 34.08 Changed Class II histone deacetylase complex subunits 2 and 3
HDAC4_Gln PF12203 Domain 6 235 86.40 69 9.97 Changed Glutamine rich N terminal domain of histone deacetylase 4
HDC PF02329 Domain 4 71 262.60 46 94.92 Changed Histidine carboxylase PI chain
HdeA PF06411 Domain 33 942 94.30 39 85.95 Changed HdeA/HdeB family
hDGE_amylase PF14701 Domain 65 321 363.10 35 27.98 New glucanotransferase domain of human glycogen debranching enzyme
HDNR PF15115 Family 6 73 150.10 36 84.54 New Domain of unknown function with conserved HDNR motif
HDOD PF08668 Domain 57 3180 178.50 20 48.05 Changed HDOD domain
HDPD PF02924 Domain 74 818 110.10 37 93.51 Changed Bacteriophage lambda head decoration protein D
HDV_ag PF01517 Family 4 1108 117.60 80 89.58 Changed Hepatitis delta virus delta antigen
HD_2 PF12917 Family 3 447 210.00 60 97.87 Changed HD containing hydrolase-like enzyme
HD_3 PF13023 Domain 143 2536 160.20 26 71.76 Changed HD domain
HD_4 PF13328 Family 118 7076 149.10 37 23.59 Changed HD domain
HD_5 PF13487 Domain 81 3171 64.10 32 13.77 Changed HD domain
HD_assoc PF13286 Domain 344 2449 91.00 22 22.24 Changed Phosphohydrolase-associated domain
Head-tail_con PF12236 Family 28 301 417.40 20 87.51 Changed Bacteriophage head to tail connecting protein
Head_binding PF09008 Domain 5 167 109.70 70 16.69 Changed Head binding
HEAT PF02985 Repeat 590 1878 30.50 27 3.66 Changed HEAT repeat
HEAT_2 PF13646 Family 323 11825 88.30 20 24.50 Changed HEAT repeats
HEAT_EZ PF13513 Repeat 261 1731 54.80 25 5.68 Changed HEAT-like repeat
HEAT_PBS PF03130 Repeat 221 340 27.50 31 10.24 Changed PBS lyase HEAT-like repeat
HECA PF15353 Family 14 102 102.00 54 20.64 New Headcase protein family homologue
HECT PF00632 Domain 133 4368 293.50 28 21.16 Changed HECT-domain (ubiquitin-transferase)
HECT_2 PF09814 Family 28 316 298.30 16 76.93 Changed HECT-like Ubiquitin-conjugating enzyme (E2)-binding
hEGF PF12661 Domain 521 6130 13.00 50 2.13 Changed Human growth factor-like EGF
HeH PF12949 Domain 47 275 34.40 38 7.90 Changed HeH/LEM domain
Helicase_C PF00271 Family 480 89228 81.30 23 8.77 Changed Helicase conserved C-terminal domain
Helicase_C_2 PF13307 Domain 152 5901 165.30 27 22.05 Changed Helicase C-terminal domain
Helicase_C_3 PF13625 Domain 93 1240 129.40 30 19.02 Changed Helicase conserved C-terminal domain
Helicase_C_4 PF13871 Domain 47 482 240.40 40 21.03 Changed Helicase_C-like
Helicase_IV_N PF12462 Family 36 672 164.40 57 24.00 Changed DNA helicase IV / RNA helicase N terminal
Helicase_RecD PF05127 Domain 106 1317 161.80 45 21.72 Changed Helicase
Helicase_Sgs1 PF11408 Family 5 29 77.40 40 5.87 Changed Sgs1 RecQ helicase
Helitron_like_N PF14214 Family 42 666 155.40 26 14.84 Changed Helitron helicase-like domain at N-terminus
HeLo PF14479 Domain 65 227 189.70 16 32.69 New Prion-inhibition and propagation
HELP PF03451 Family 7 705 69.00 42 8.56 Changed HELP motif
HEM4 PF02602 Family 137 4602 221.40 21 70.07 Changed Uroporphyrinogen-III synthase HemD
Hemagglutinin PF00509 Family 15 50634 432.00 51 96.33 Changed Haemagglutinin
Hema_esterase PF03996 Domain 6 382 323.80 45 74.88 Changed Hemagglutinin esterase
Hema_HEFG PF02710 Family 12 364 131.10 47 29.16 Changed Hemagglutinin domain of haemagglutinin-esterase-fusion glycoprotein
Hema_stalk PF08720 Domain 3 144 172.80 99 27.14 Changed Influenza C hemagglutinin stalk
HemeBinding_Shp PF11545 Family 3 63 148.50 42 44.61 Changed Cell surface heme-binding protein Shp
Hemerythrin PF01814 Domain 189 6352 127.90 17 51.44 Changed Hemerythrin HHE cation binding domain
Heme_oxygenase PF01126 Domain 18 1215 182.30 20 75.77 Changed Heme oxygenase
HemN_C PF06969 Domain 87 5381 66.00 23 16.25 Changed HemN C-terminal domain
Hemocyanin_C PF03723 Domain 163 687 235.80 31 36.26 Changed Hemocyanin, ig-like domain
Hemocyanin_M PF00372 Domain 14 743 247.20 31 41.35 Changed Hemocyanin, copper containing domain
Hemocyanin_N PF03722 Domain 111 668 113.70 27 17.52 Changed Hemocyanin, all-alpha domain
HemolysinCabind PF00353 Repeat 305 35811 17.60 43 19.13 Changed Hemolysin-type calcium-binding repeat (2 copies)
Hemolysin_N PF12563 Family 7 120 176.30 68 28.55 Changed Hemolytic toxin N terminal
Hemopexin PF00045 Repeat 76 5321 44.70 26 26.74 Changed Hemopexin
hemP PF10636 Family 56 837 38.00 57 57.52 Changed Hemin uptake protein hemP
HemS PF05171 Domain 108 1015 130.00 33 72.42 Changed Haemin-degrading HemS.ChuX domain
HemX PF04375 Family 5 1205 356.10 38 87.20 Changed HemX
HemY_N PF07219 Family 19 1471 108.30 35 26.03 Changed HemY protein N-terminus
Hen1_L PF12623 Domain 27 120 241.90 54 50.93 Changed RNA repair, ligase-Pnkp-associating, region of Hen1
Hepar_II_III PF07940 Family 158 1644 143.20 18 21.37 Changed Heparinase II/III-like protein
Hepatitis_core PF00906 Domain 12 7177 125.70 89 88.87 Changed Hepatitis core antigen
Hepcidin PF06446 Domain 20 197 55.70 42 64.69 Changed Hepcidin
HEPN PF05168 Family 92 1339 115.30 18 27.05 Changed HEPN domain
HEPPP_synt_1 PF07307 Family 15 387 175.40 39 77.92 Changed Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1
Hepsin-SRCR PF09272 Domain 2 55 105.50 65 25.71 Changed Hepsin, SRCR
Hep_59 PF07052 Family 46 244 100.10 35 33.04 Changed Hepatocellular carcinoma-associated antigen 59
Hep_core_N PF08290 Domain 2 5101 26.90 96 24.69 Changed Hepatitis core protein, putative zinc finger
Herp-Cyclin PF09241 Domain 3 3 106.00 81 41.30 Changed Herpesviridae viral cyclin
Herpes_alk_exo PF01771 Family 14 226 373.60 23 77.26 Changed Herpesvirus alkaline exonuclease
Herpes_BBRF1 PF04793 Family 10 28 273.10 29 93.11 Changed BRRF1-like protein
Herpes_BLLF1 PF05109 Family 3 270 437.20 62 100.00 Changed Herpes virus major outer envelope glycoprotein (BLLF1)
Herpes_BLRF2 PF05812 Family 15 36 118.10 37 90.26 Changed Herpesvirus BLRF2 protein
Herpes_BMRF2 PF04633 Family 10 24 348.00 30 98.13 Changed Herpesvirus BMRF2 protein
Herpes_BTRF1 PF04682 Family 12 30 245.40 37 66.63 Changed Herpesvirus BTRF1 protein conserved region
Herpes_capsid PF06112 Family 8 23 156.30 31 92.09 Changed Gammaherpesvirus capsid protein
Herpes_DNAp_acc PF04929 Family 11 24 391.10 34 98.89 Changed Herpes DNA replication accessory factor
Herpes_env PF01673 Family 32 143 494.60 31 93.89 Changed Herpesvirus putative major envelope glycoprotein
Herpes_gE PF02480 Family 19 334 298.90 33 76.66 Changed Alphaherpesvirus glycoprotein E
Herpes_gI PF01688 Domain 13 161 161.00 44 44.88 Changed Alphaherpesvirus glycoprotein I
Herpes_glycop PF01528 Family 30 163 329.60 26 92.25 Changed Herpesvirus glycoprotein M
Herpes_glycop_D PF01537 Domain 22 286 111.50 34 26.10 Changed Herpesvirus glycoprotein D/GG/GX domain
Herpes_glycop_H PF02489 Family 30 314 524.70 23 85.33 Changed Herpesvirus glycoprotein H
Herpes_gp2 PF05955 Family 5 19 226.70 69 33.06 Changed Equine herpesvirus glycoprotein gp2
Herpes_Helicase PF02689 Family 15 968 251.50 33 46.34 Changed Helicase
Herpes_heli_pri PF05774 Family 8 24 125.00 30 37.95 Changed Herpesvirus helicase-primase complex component
Herpes_HEPA PF03324 Family 32 154 93.30 30 12.85 Changed Herpesvirus DNA helicase/primase complex associated protein
Herpes_ICP4_C PF03585 Family 13 161 321.00 49 27.44 Changed Herpesvirus ICP4-like protein C-terminal region
Herpes_ICP4_N PF03584 Family 14 132 174.20 51 12.23 Changed Herpesvirus ICP4-like protein N-terminal region
Herpes_IE1 PF07340 Family 2 150 212.90 60 59.56 Changed Cytomegalovirus IE1 protein
Herpes_IE2_3 PF03361 Family 14 91 159.10 35 28.34 Changed Herpes virus intermediate/early protein 2/3
Herpes_IE68 PF02479 Family 13 78 125.40 39 38.87 Changed Herpesvirus immediate early protein
Herpes_IR6 PF06307 Family 4 38 133.80 66 83.56 Changed Herpesvirus IR6 protein
Herpes_LAMP2 PF06126 Family 2 12 457.10 70 99.80 Changed Herpesvirus Latent membrane protein 2
Herpes_LMP1 PF05297 Family 2 1117 128.40 64 101.97 Changed Herpesvirus latent membrane protein 1 (LMP1)
Herpes_LMP2 PF07415 Family 3 276 230.90 53 99.99 Changed Gammaherpesvirus latent membrane protein (LMP2) protein
Herpes_LP PF03363 Family 4 54 111.30 67 134.18 Changed Herpesvirus leader protein
Herpes_MCP PF03122 Family 32 190 1168.50 38 98.62 Changed Herpes virus major capsid protein
Herpes_ORF11 PF04797 Family 23 85 307.40 23 75.33 Changed Herpesvirus dUTPase protein
Herpes_ori_bp PF02399 Family 13 207 389.30 22 60.09 Changed Origin of replication binding protein
Herpes_PAP PF03325 Family 6 52 243.10 52 71.12 Changed Herpesvirus polymerase accessory protein
Herpes_pp38 PF04846 Family 5 34 61.50 59 25.88 Changed Herpesvirus pp38 phosphoprotein
Herpes_pp85 PF04637 Family 13 77 464.20 29 71.87 Changed Herpesvirus phosphoprotein 85 (HHV6-7 U14/HCMV UL25)
Herpes_TAF50 PF03326 Family 8 87 284.80 34 89.77 Changed Herpesvirus transcription activation factor (transactivator)
Herpes_teg_N PF04843 Family 23 211 173.50 32 6.75 Changed Herpesvirus tegument protein, N-terminal conserved region
Herpes_TK PF00693 Family 14 508 249.80 52 70.99 Changed Thymidine kinase from herpesvirus
Herpes_TK_C PF08465 Family 12 34 32.70 48 5.80 Changed Thymidine kinase from Herpesvirus C-terminal
Herpes_U15 PF05613 Family 2 6 109.30 77 80.20 Changed Human herpesvirus U15 protein
Herpes_U26 PF07402 Family 2 6 293.00 61 99.15 Changed Human herpesvirus U26 protein
Herpes_U30 PF04523 Family 18 68 893.00 26 92.53 Changed Herpes virus tegument protein U30
Herpes_U34 PF04541 Family 29 132 202.70 29 69.62 Changed Herpesvirus virion protein U34
Herpes_U44 PF04533 Family 11 59 205.90 33 77.15 Changed Herpes virus U44 protein
Herpes_U47 PF05467 Family 2 53 119.00 85 96.88 Changed Herpesvirus glycoprotein U47
Herpes_U5 PF05999 Family 14 74 432.70 41 71.31 Changed Herpesvirus U5-like family
Herpes_U55 PF06501 Family 3 7 426.60 42 95.40 Changed Human herpesvirus U55 protein
Herpes_U59 PF04529 Family 8 35 390.30 40 96.13 Changed Herpesvirus U59 protein
Herpes_UL1 PF05259 Family 14 77 104.90 33 53.27 Changed Herpesvirus glycoprotein L
Herpes_UL14 PF03580 Family 12 75 142.40 53 74.68 Changed Herpesvirus UL14-like protein
Herpes_UL16 PF03044 Family 31 277 223.10 36 94.79 Changed Herpesvirus UL16/UL94 family
Herpes_UL17 PF04559 Family 36 169 507.20 22 95.08 Changed Herpesvirus UL17 protein
Herpes_UL20 PF04544 Family 16 54 165.10 32 77.71 Changed Herpesvirus egress protein UL20
Herpes_UL21 PF03252 Family 14 85 424.90 37 97.05 Changed Herpesvirus UL21
Herpes_UL24 PF01646 Family 16 158 174.40 32 65.99 Changed Herpes virus protein UL24
Herpes_UL25 PF01499 Family 15 156 513.80 29 94.47 Changed Herpesvirus UL25 family
Herpes_UL3 PF03369 Family 15 263 62.50 88 73.24 Changed Herpesvirus UL3 protein
Herpes_UL31 PF02718 Family 30 120 262.80 32 85.44 Changed Herpesvirus UL31-like protein
Herpes_UL32 PF06070 Family 9 59 674.30 31 98.07 Changed Herpesvirus large structural phosphoprotein UL32
Herpes_UL33 PF03581 Family 29 92 77.30 38 58.70 Changed Herpesvirus UL33-like protein
Herpes_UL35 PF04496 Family 11 39 99.00 38 74.64 Changed Herpesvirus UL35 family
Herpes_UL36 PF03586 Family 11 176 213.20 54 10.60 Changed Herpesvirus UL36 tegument protein
Herpes_UL37_1 PF03970 Family 9 82 264.90 37 25.28 Changed Herpesvirus UL37 tegument protein
Herpes_UL37_2 PF07413 Family 6 101 276.10 58 79.43 Changed Betaherpesvirus immediate-early glycoprotein UL37
Herpes_UL4 PF03277 Family 15 76 184.80 44 88.16 Changed Herpesvirus UL4 family
Herpes_UL42 PF02282 Domain 12 135 137.10 27 63.67 Changed DNA polymerase processivity factor (UL42)
Herpes_UL43 PF05072 Family 9 65 353.40 33 91.23 Changed Herpesvirus UL43 protein
Herpes_UL45 PF05473 Family 11 167 141.50 17 27.58 Changed UL45 protein
Herpes_UL46 PF03387 Family 11 70 437.90 44 65.51 Changed Herpesvirus UL46 protein
Herpes_UL47 PF03362 Family 13 117 414.00 36 60.55 Changed Herpesvirus UL47 protein
Herpes_UL49_1 PF03117 Family 16 80 247.60 42 50.98 Changed UL49 family
Herpes_UL49_2 PF04823 Family 13 97 96.10 58 33.54 Changed Herpesvirus UL49 tegument protein
Herpes_UL49_5 PF05702 Family 8 35 93.50 35 98.32 Changed Herpesvirus UL49.5 envelope/tegument protein
Herpes_UL51 PF04540 Family 16 57 160.80 50 66.65 Changed Herpesvirus UL51 protein
Herpes_UL52 PF03121 Family 38 329 69.60 23 8.88 Changed Herpesviridae UL52/UL70 DNA primase
Herpes_UL55 PF04537 Family 7 43 164.90 38 89.39 Changed Herpesvirus UL55 protein
Herpes_UL56 PF04534 Family 3 23 193.30 71 84.13 Changed Herpesvirus UL56 protein
Herpes_UL6 PF01763 Family 30 194 449.10 31 82.83 Changed Herpesvirus UL6 like
Herpes_UL69 PF05459 Family 30 149 212.20 31 39.51 Changed Herpesvirus transcriptional regulator family
Herpes_UL7 PF01677 Family 33 122 220.00 27 77.39 Changed Herpesvirus UL7 like
Herpes_UL73 PF03554 Family 16 253 89.80 51 77.14 Changed UL73 viral envelope glycoprotein
Herpes_UL74 PF07982 Family 4 191 200.00 65 81.24 Changed Herpes UL74 glycoproteins
Herpes_UL79 PF03049 Family 19 61 246.10 36 92.22 Changed UL79 family
Herpes_UL82_83 PF05784 Family 18 118 340.30 31 63.36 Changed Betaherpesvirus UL82/83 protein N terminus
Herpes_UL87 PF03043 Family 19 90 494.10 43 72.04 Changed Herpesvirus UL87 family
Herpes_UL92 PF03048 Family 18 82 162.60 28 70.67 Changed UL92 family
Herpes_UL95 PF03038 Family 20 82 333.20 36 87.25 Changed UL95 family
Herpes_US12 PF05363 Family 2 19 80.40 53 95.56 Changed Herpesvirus US12 family
Herpes_US9 PF06072 Family 10 46 57.90 49 47.07 Changed Alphaherpesvirus tegument protein US9
Herpes_V23 PF01802 Family 32 501 163.90 62 98.31 Changed Herpesvirus VP23 like capsid protein
Herpes_VP19C PF03327 Family 31 121 283.70 27 73.81 Changed Herpesvirus capsid shell protein VP19C
Herpeto_peptide PF14409 Family 6 8 57.80 39 73.45 Changed Ribosomally synthesized peptide in Herpetosiphon
HERV-K_env_2 PF13804 Domain 16 352 167.60 89 44.44 Changed Retro-transcribing viruses envelope glycoprotein
HET PF06985 Family 164 2623 139.30 21 21.73 Changed Heterokaryon incompatibility protein (HET)
Het-C PF07217 Family 20 311 398.00 44 72.79 Changed Heterokaryon incompatibility protein Het-C
HET-s_218-289 PF11558 Motif 5 15 63.00 33 22.32 Changed Het-s 218-289
HEV_ORF1 PF02444 Family 3 266 81.00 74 96.04 Changed Hepatitis E virus ORF-2 (Putative capsid protein)
Hexapep PF00132 Repeat 216 70883 35.10 23 25.26 Changed Bacterial transferase hexapeptide (six repeats)
Hexapep_2 PF14602 Repeat 86 8656 33.80 33 14.21 New Hexapeptide repeat of succinyl-transferase
HEXIM PF15313 Family 25 120 132.50 41 43.16 New Hexamethylene bis-acetamide-inducible protein
Hexokinase_1 PF00349 Domain 14 1806 195.20 35 42.73 Changed Hexokinase
Hexokinase_2 PF03727 Domain 15 1869 217.50 34 49.64 Changed Hexokinase
Hexose_dehydrat PF03559 Family 79 286 203.50 38 87.16 Changed NDP-hexose 2,3-dehydratase
Hex_IIIa PF02455 Family 13 134 481.10 62 87.16 Changed Hexon-associated protein (IIIa)
He_PIG PF05345 Family 108 2176 49.40 32 9.08 Changed Putative Ig domain
He_PIG_assoc PF10632 Domain 4 47 28.80 58 4.97 Changed He_PIG associated, NEW1 domain of bacterial glycohydrolase
HflK_N PF12221 Family 70 1238 56.70 53 14.02 Changed Bacterial membrane protein N terminal
HGD-D PF06050 Family 163 2269 306.50 21 44.28 Changed 2-hydroxyglutaryl-CoA dehydratase, D-component
hGDE_central PF14702 Domain 58 283 236.10 34 16.88 New central domain of human glycogen debranching enzyme
hGDE_N PF14699 Family 68 237 94.70 30 6.56 New N-terminal domain from the human glycogen debranching enzyme
HgmA PF04209 Family 14 1185 378.40 34 93.62 Changed homogentisate 1,2-dioxygenase
HGTP_anticodon PF03129 Domain 116 17881 92.50 22 17.01 Changed Anticodon binding domain
HGTP_anticodon2 PF12745 Domain 30 206 226.00 26 14.78 Changed Anticodon binding domain of tRNAs
HGWP PF03578 Repeat 91 1454 27.60 65 31.14 Changed HGWP repeat
HHA PF05321 Family 14 1466 56.20 58 82.15 Changed Haemolysin expression modulating protein
HHH PF00633 Motif 104 8740 29.70 42 10.45 Changed Helix-hairpin-helix motif
HhH-GPD PF00730 Domain 72 13897 138.90 24 47.70 Changed HhH-GPD superfamily base excision DNA repair protein
HHH_2 PF12826 Motif 72 5697 61.40 32 9.52 Changed Helix-hairpin-helix motif
HHH_3 PF12836 Domain 335 8248 64.20 37 14.92 Changed Helix-hairpin-helix motif
HHH_4 PF14490 Family 189 1795 94.40 34 12.36 New Helix-hairpin-helix containing domain
HHH_5 PF14520 Domain 554 12686 61.00 23 15.86 New Helix-hairpin-helix domain
HHH_6 PF14579 Domain 364 7029 91.90 30 7.87 New Helix-hairpin-helix motif
HHH_7 PF14635 Domain 4 299 104.10 41 6.91 New Helix-hairpin-helix motif
HHH_8 PF14716 Domain 351 1491 67.70 29 13.24 New Helix-hairpin-helix domain
HHV6-IE PF03753 Family 3 44 565.20 63 91.78 Changed Human herpesvirus 6 immediate early protein
HH_signal PF01085 Domain 4 383 126.60 72 36.71 Changed Hedgehog amino-terminal signalling domain
HI0933_like PF03486 Family 49 4052 360.40 33 90.89 Changed HI0933-like protein
HiaBD2 PF15403 Motif 19 46 53.10 45 7.47 New HiaBD2_N domain of Trimeric autotransporter adhesin (GIN)
HicB PF05534 Family 24 1200 48.00 32 43.10 Changed HicB family
Hid1 PF12722 Family 28 348 599.10 26 91.93 Changed High-temperature-induced dauer-formation protein
HIF-1 PF11413 Family 17 330 34.00 61 4.79 Changed Hypoxia-inducible factor-1
HIF-1a_CTAD PF08778 Domain 15 244 38.70 68 4.98 Changed HIF-1 alpha C terminal transactivation domain
HIGH_NTase1 PF05636 Family 10 1483 364.90 35 97.14 Changed HIGH Nucleotidyl Transferase
HIG_1_N PF04588 Family 59 931 53.40 27 41.59 Changed Hypoxia induced protein conserved region
HILPDA PF15220 Family 3 15 62.40 76 95.12 New Hypoxia-inducible lipid droplet-associated
HIM1 PF08732 Family 4 31 330.40 38 90.90 Changed HIM1
HIN PF02760 Family 10 158 163.60 54 42.91 Changed HIN-200/IF120x domain
Hint PF01079 Family 46 484 193.60 31 44.69 Changed Hint module
Hint_2 PF13403 Domain 194 984 135.40 32 24.73 Changed Hint domain
HipA_C PF07804 Domain 175 2174 82.00 26 20.24 Changed HipA-like C-terminal domain
HipA_N PF07805 Domain 170 2004 83.10 28 20.04 Changed HipA-like N-terminal domain
HIPIP PF01355 Domain 43 231 65.40 40 62.29 Changed High potential iron-sulfur protein
Hira PF07569 Family 34 350 188.80 25 21.31 Changed TUP1-like enhancer of split
HIRAN PF08797 Domain 51 781 100.50 19 15.98 Changed HIRAN domain
HIRA_B PF09453 Motif 30 239 23.40 48 2.46 Changed HIRA B motif
Hirudin PF00713 Domain 8 20 57.20 81 94.47 Changed Hirudin
HisG PF01634 Family 18 3683 161.50 36 61.55 Changed ATP phosphoribosyltransferase
HisG_C PF08029 Domain 39 1973 75.80 44 25.62 Changed HisG, C-terminal domain
HisKA PF00512 Domain 265 79834 67.20 24 10.76 Changed His Kinase A (phospho-acceptor) domain
HisKA_2 PF07568 Domain 91 1811 75.40 34 13.93 Changed Histidine kinase
HisKA_3 PF07730 Domain 191 12598 67.60 26 14.71 Changed Histidine kinase
HisK_N PF09385 Domain 7 130 137.40 58 43.26 Changed Histidine kinase N terminal
Histidinol_dh PF00815 Family 16 3998 401.20 42 91.68 Changed Histidinol dehydrogenase
Histone PF00125 Domain 64 18172 64.10 53 50.27 Changed Core histone H2A/H2B/H3/H4
Histone_HNS PF00816 Family 151 2937 100.10 31 80.49 Changed H-NS histone family
Hist_deacetyl PF00850 Domain 148 5457 289.40 27 65.04 Changed Histone deacetylase domain
Hist_rich_Ca-bd PF10529 Repeat 25 173 15.30 56 11.48 Changed Histidine-rich Calcium-binding repeat region
His_binding PF02098 Domain 13 345 139.90 15 70.32 Changed Tick histamine binding protein
His_biosynth PF00977 Family 146 7930 229.60 33 89.54 Changed Histidine biosynthesis protein
His_kinase PF06580 Family 82 7029 82.50 32 15.92 Changed Histidine kinase
His_leader PF08047 Family 4 51 15.70 96 100.00 Changed Histidine operon leader peptide
His_Phos_1 PF00300 Domain 267 22415 153.40 22 62.77 Changed Histidine phosphatase superfamily (branch 1)
His_Phos_2 PF00328 Family 93 4055 323.30 15 63.62 Changed Histidine phosphatase superfamily (branch 2)
HIT PF01230 Domain 26 8213 96.10 27 65.13 Changed HIT domain
Hjc PF01870 Family 16 183 92.00 30 64.17 Changed Archaeal holliday junction resolvase (hjc)
HJURP_C PF12347 Domain 13 404 63.80 39 14.80 Changed Holliday junction regulator protein family C-terminal repeat
HJURP_mid PF12346 Domain 4 36 105.50 61 17.80 Changed Holliday junction recognition protein-associated repeat
HK PF02110 Domain 9 2596 239.80 38 87.31 Changed Hydroxyethylthiazole kinase family
HK97-gp10_like PF04883 Family 172 1665 85.30 19 61.94 Changed Bacteriophage HK97-gp10, putative tail-component
HLH PF00010 Domain 164 13830 53.50 29 14.63 Changed Helix-loop-helix DNA-binding domain
HlyC PF02794 Family 29 386 134.70 34 84.55 Changed RTX toxin acyltransferase family
HlyD PF00529 Family 44 15364 262.60 18 71.90 Changed HlyD family secretion protein
HlyD_2 PF12700 Family 70 15970 298.90 18 77.75 Changed HlyD family secretion protein
HlyD_3 PF13437 Family 147 4655 112.10 18 29.22 Changed HlyD family secretion protein
HlyE PF06109 Family 2 433 198.90 81 97.36 Changed Haemolysin E (HlyE)
HlyIII PF03006 Family 81 4985 203.00 27 78.87 Changed Haemolysin-III related
HlyU PF10115 Family 31 240 92.50 49 97.45 Changed Transcriptional activator HlyU
HMA PF00403 Domain 73 19664 61.20 26 16.34 Changed Heavy-metal-associated domain
HMD PF03201 Family 13 59 97.90 47 28.43 Changed H2-forming N5,N10-methylene-tetrahydromethanopterin dehydrogenase
HMG-CoA_red PF00368 Family 116 2199 348.70 33 68.69 Changed Hydroxymethylglutaryl-coenzyme A reductase
HMG14_17 PF01101 Family 18 482 80.60 54 86.60 Changed HMG14 and HMG17
HMGL-like PF00682 Family 20 12580 236.80 26 43.97 Changed HMGL-like
HMG_box PF00505 Domain 31 8695 66.20 29 17.82 Changed HMG (high mobility group) box
HMG_box_2 PF09011 Domain 10 1103 70.30 37 19.76 Changed HMG-box domain
HMG_box_5 PF14887 Family 4 102 82.70 69 13.76 New HMG (high mobility group) box 5
HMG_CoA_synt_C PF08540 Family 10 2505 142.60 23 53.54 Changed Hydroxymethylglutaryl-coenzyme A synthase C terminal
HMG_CoA_synt_N PF01154 Family 4 1680 165.20 41 40.45 Changed Hydroxymethylglutaryl-coenzyme A synthase N terminal
HmuY PF14064 Family 83 274 176.90 20 72.01 Changed HmuY protein
HN PF00423 Family 21 2456 439.80 33 94.13 Changed Haemagglutinin-neuraminidase
HNF-1A_C PF04813 Family 5 56 81.80 65 14.36 Changed Hepatocyte nuclear factor 1 (HNF-1), alpha isoform C terminus
HNF-1B_C PF04812 Family 11 156 219.60 56 42.10 Changed Hepatocyte nuclear factor 1 (HNF-1), beta isoform C terminus
HNF-1_N PF04814 Family 9 283 171.40 47 37.26 Changed Hepatocyte nuclear factor 1 (HNF-1), N terminus
HNF_C PF09354 Domain 26 211 62.20 43 14.86 Changed HNF3 C-terminal domain
HNH PF01844 Family 92 7400 47.60 26 18.89 Changed HNH endonuclease
HNH_2 PF13391 Domain 198 1540 64.70 29 19.80 Changed HNH endonuclease
HNH_3 PF13392 Domain 226 1385 45.20 27 24.40 Changed HNH endonuclease
HNH_4 PF13395 Domain 93 798 53.20 33 6.29 Changed HNH endonuclease
HNH_5 PF14279 Domain 15 136 68.00 50 23.01 Changed HNH endonuclease
hNIFK_binding PF12196 Domain 5 73 39.30 63 14.58 Changed FHA Ki67 binding domain of hNIFK
HNOB PF07700 Domain 16 853 159.00 24 32.10 Changed Heme NO binding
HNOBA PF07701 Domain 33 958 138.40 30 19.84 Changed Heme NO binding associated
HnRNPA1 PF11627 Family 8 294 36.70 76 13.49 Changed Nuclear factor hnRNPA1
HnRNP_M PF11532 Family 3 73 29.50 80 4.60 Changed Heterogeneous nuclear ribonucleoprotein M
HOASN PF14515 Domain 2 32 86.30 68 26.25 New Haem-oxygenase-associated N-terminal helices
HobA PF12163 Domain 15 195 176.60 56 99.59 Changed DNA replication regulator
HOK_GEF PF01848 Family 41 1852 42.80 47 78.31 Changed Hok/gef family
Holin_BlyA PF05102 Family 3 87 59.30 54 93.80 Changed holin, BlyA family
Holin_LLH PF09682 Family 13 257 103.90 41 87.97 Changed Phage holin protein (Holin_LLH)
Homeobox PF00046 Domain 182 25115 54.40 35 16.80 Changed Homeobox domain
Homeobox_KN PF05920 Family 99 3978 40.00 54 12.00 Changed Homeobox KN domain
Homez PF11569 Family 9 166 52.90 41 7.20 Changed Homeodomain leucine-zipper encoding, Homez
Homoserine_dh PF00742 Domain 147 5558 185.10 37 33.91 Changed Homoserine dehydrogenase
Hom_end PF05204 Domain 24 211 102.50 30 13.28 Changed Homing endonuclease
Hom_end_hint PF05203 Domain 37 308 284.60 23 42.25 Changed Hom_end-associated Hint
HOOK PF05622 Family 9 557 523.20 26 58.15 Changed HOOK protein
HopJ PF08888 Domain 39 245 109.60 47 92.81 Changed HopJ type III effector protein
HopW1-1 PF15457 Family 5 28 288.10 65 38.93 New Type III T3SS secreted effector HopW1-1/HopPmaA
HORMA PF02301 Domain 95 975 183.40 20 60.33 Changed HORMA domain
Hormone_1 PF00103 Domain 17 1608 156.40 32 94.64 Changed Somatotropin hormone family
Hormone_2 PF00123 Family 56 842 27.80 39 34.80 Changed Peptide hormone
Hormone_3 PF00159 Family 21 274 35.70 61 41.61 Changed Pancreatic hormone peptide
Hormone_4 PF00220 Family 8 197 9.00 83 7.31 Changed Neurohypophysial hormones, N-terminal Domain
Hormone_5 PF00184 Family 36 207 77.00 63 55.90 Changed Neurohypophysial hormones, C-terminal Domain
Hormone_6 PF00236 Domain 10 201 91.40 69 81.48 Changed Glycoprotein hormone
Hormone_recep PF00104 Domain 86 7507 187.90 19 41.59 Changed Ligand-binding domain of nuclear hormone receptor
Host_attach PF10116 Family 79 395 128.90 23 82.09 Changed Protein required for attachment to host cells
Hox9_act PF04617 Family 29 299 167.00 38 65.14 Changed Hox9 activation region
HoxA13_N PF12284 Family 12 395 114.00 42 47.88 Changed Hox protein A13 N terminal
HpaB PF03241 Family 87 994 197.20 33 41.46 Changed 4-hydroxyphenylacetate 3-hydroxylase C terminal
HpaB_N PF11794 Family 80 1009 248.40 39 52.63 Changed 4-hydroxyphenylacetate 3-hydroxylase N terminal
HpaP PF09483 Family 11 81 190.60 33 77.85 Changed Type III secretion protein (HpaP)
HpcH_HpaI PF03328 Family 22 6388 211.30 23 76.53 Changed HpcH/HpaI aldolase/citrate lyase family
HPD PF05044 Domain 13 191 139.90 65 21.88 Changed Homeo-prospero domain
Hph PF13694 Family 7 38 171.50 38 32.47 Changed Sec63/Sec62 complex-interacting family
HPHLAWLY PF14925 Family 5 43 485.50 48 70.18 New Domain of unknown function
HPIH PF13323 Family 40 137 149.80 28 13.89 Changed N-terminal domain with HPIH motif
HPIP PF15226 Family 9 35 118.50 66 81.84 New HCF-1 beta-propeller-interacting protein family
HPP PF04982 Family 127 972 121.40 34 44.35 Changed HPP family
HPPK PF01288 Domain 115 4673 125.90 37 60.63 Changed 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
Hpre_diP_synt_I PF07456 Family 47 636 143.80 39 79.07 Changed Heptaprenyl diphosphate synthase component I
Hpr_kinase_C PF07475 Domain 81 2208 159.20 43 53.76 Changed HPr Serine kinase C-terminal domain
Hpr_kinase_N PF02603 Family 84 1842 127.40 32 40.73 Changed HPr Serine kinase N terminus
HPS3_C PF14763 Domain 4 71 308.80 58 33.88 New Hermansky-Pudlak syndrome 3, C-terminal
HPS3_Mid PF14762 Domain 9 100 358.40 41 36.33 New Hermansky-Pudlak syndrome 3, middle region
HPS3_N PF14761 Domain 10 92 187.50 42 18.61 New Hermansky-Pudlak syndrome 3
Hpt PF01627 Family 241 11727 93.10 19 13.09 Changed Hpt domain
HP_OMP PF01856 Family 33 2354 164.40 30 37.09 Changed Helicobacter outer membrane protein
HP_OMP_2 PF02521 Domain 9 419 455.30 38 98.14 Changed Putative outer membrane protein
HR1 PF02185 Family 106 1359 69.40 23 12.45 Changed Hr1 repeat
HrcA PF01628 Family 165 2791 218.70 24 63.95 Changed HrcA protein C terminal domain
HrcA_DNA-bdg PF03444 Family 13 1056 76.20 43 22.68 Changed Winged helix-turn-helix transcription repressor, HrcA DNA-binding
HRDC PF00570 Domain 147 6087 67.30 27 11.64 Changed HRDC domain
HRM PF02793 Family 131 2035 64.90 28 8.33 Changed Hormone receptor domain
HrpA_pilin PF09589 Family 6 71 119.80 48 98.42 Changed HrpA pilus formation protein
HrpB1_HrpK PF09613 Family 8 155 158.00 31 94.89 Changed Bacterial type III secretion protein (HrpB1_HrpK)
HrpB2 PF09487 Family 9 93 116.90 38 89.29 Changed Bacterial type III secretion protein (HrpB2)
HrpB4 PF09502 Family 8 89 211.40 37 94.56 Changed Bacterial type III secretion protein (HrpB4)
HrpB7 PF09486 Family 6 92 149.70 35 85.75 Changed Bacterial type III secretion protein (HrpB7)
HrpB_C PF08482 Family 136 1495 132.00 52 16.94 Changed ATP-dependent helicase C-terminal
HrpE PF06188 Family 10 187 164.80 25 79.76 Changed HrpE/YscL/FliH and V-type ATPase subunit E
HrpF PF06266 Family 7 64 73.40 46 98.66 Changed HrpF protein
HrpJ PF07201 Domain 36 767 160.10 23 46.32 Changed HrpJ-like domain
Hrs_helical PF12210 Domain 5 116 93.20 61 13.22 Changed Hepatocyte growth factor-regulated tyrosine kinase substrate
HRXXH PF13933 Domain 28 85 225.10 40 80.13 Changed Putative peptidase family
HR_lesion PF05514 Family 10 108 133.20 48 77.07 Changed HR-like lesion-inducing
Hs1pro-1_C PF07014 Family 5 41 248.10 56 59.96 Changed Hs1pro-1 protein C-terminus
Hs1pro-1_N PF07231 Family 5 36 176.50 48 40.19 Changed Hs1pro-1 N-terminus
HS1_rep PF02218 Repeat 18 1059 34.90 59 36.89 Changed Repeat in HS1/Cortactin
HSA PF07529 Domain 50 836 70.80 25 4.41 Changed HSA
hSac2 PF12456 Family 32 312 111.30 27 15.56 Changed Inositol phosphatase
HsbA PF12296 Family 71 311 119.30 19 53.41 Changed Hydrophobic surface binding protein A
HSBP1 PF06825 Family 20 305 50.70 47 56.10 Changed Heat shock factor binding protein 1
HSCB_C PF07743 Domain 143 1500 77.40 34 40.93 Changed HSCB C-terminal oligomerisation domain
HSD3 PF15244 Family 10 108 234.10 43 66.25 New Hydroxy-steroid dehydrogenase
HsdM_N PF12161 Domain 142 4604 134.60 20 25.85 Changed HsdM N-terminal domain
HSDR_N PF04313 Family 77 3819 175.90 19 18.43 Changed Type I restriction enzyme R protein N terminus (HSDR_N)
HSDR_N_2 PF13588 Domain 81 1412 110.80 21 20.20 Changed Type I restriction enzyme R protein N terminus (HSDR_N)
HSF_DNA-bind PF00447 Family 114 1989 99.60 36 21.34 Changed HSF-type DNA-binding
hSH3 PF14603 Domain 3 112 81.50 52 13.02 New Helically-extended SH3 domain
HSL_N PF06350 Family 6 166 251.30 43 37.71 Changed Hormone-sensitive lipase (HSL) N-terminus
HSNSD PF12062 Family 7 310 383.60 61 55.88 Changed heparan sulfate-N-deacetylase
HSP20 PF00011 Family 37 9881 97.10 23 59.55 Changed Hsp20/alpha crystallin family
HSP33 PF01430 Family 181 3184 275.00 33 92.77 Changed Hsp33 protein
HSP70 PF00012 Family 33 23002 370.00 30 85.27 Changed Hsp70 protein
HSP90 PF00183 Family 11 5703 358.50 32 66.61 Changed Hsp90 protein
HSP9_HSP12 PF04119 Family 24 130 58.00 47 59.56 Changed Heat shock protein 9/12
HSV_VP16_C PF12149 Domain 2 19 30.10 85 6.14 Changed Herpes simplex virus virion protein 16 C terminal
HtaA PF04213 Family 25 599 153.20 31 45.43 Changed Htaa
HTHP PF11534 Family 9 36 69.40 51 80.69 Changed Hexameric tyrosine-coordinated heme protein (HTHP)
HTH_1 PF00126 Domain 1536 86700 59.70 33 19.98 Changed Bacterial regulatory helix-turn-helix protein, lysR family
HTH_10 PF04967 Domain 30 808 52.70 37 16.19 Changed HTH DNA binding domain
HTH_11 PF08279 Domain 103 12449 54.70 24 15.12 Changed HTH domain
HTH_12 PF08461 Domain 10 1050 64.30 54 8.60 Changed Ribonuclease R winged-helix domain
HTH_13 PF11972 Domain 12 171 53.90 53 15.22 Changed HTH DNA binding domain
HTH_15 PF12324 Domain 6 128 73.50 39 34.60 Changed Helix-turn-helix domain of alkylmercury lyase
HTH_16 PF12645 Domain 52 618 61.90 36 77.88 Changed Helix-turn-helix domain
HTH_17 PF12728 Domain 461 7911 50.90 22 40.39 Changed Helix-turn-helix domain
HTH_18 PF12833 Domain 512 57814 79.60 26 23.35 Changed Helix-turn-helix domain
HTH_19 PF12844 Domain 149 14559 62.70 22 31.97 Changed Helix-turn-helix domain
HTH_20 PF12840 Domain 108 9773 61.20 27 39.10 Changed Helix-turn-helix domain
HTH_21 PF13276 Domain 515 11498 59.50 26 23.43 Changed HTH-like domain
HTH_22 PF13309 Domain 187 1886 63.90 37 28.64 Changed HTH domain
HTH_23 PF13384 Domain 345 2487 45.90 20 22.10 Changed Homeodomain-like domain
HTH_24 PF13412 Domain 608 12234 46.50 30 21.83 Changed Winged helix-turn-helix DNA-binding
HTH_25 PF13413 Domain 195 2987 61.70 32 21.10 Changed Helix-turn-helix domain
HTH_26 PF13443 Domain 196 4823 60.70 23 55.90 Changed Cro/C1-type HTH DNA-binding domain
HTH_27 PF13463 Domain 61 2080 65.80 23 40.16 Changed Winged helix DNA-binding domain
HTH_28 PF13518 Domain 193 5836 50.90 20 29.02 Changed Helix-turn-helix domain
HTH_29 PF13551 Domain 85 3523 103.40 18 36.88 Changed Winged helix-turn helix
HTH_3 PF01381 Domain 175 36941 53.20 22 32.31 Changed Helix-turn-helix
HTH_30 PF13556 Domain 456 5435 58.40 30 14.07 Changed PucR C-terminal helix-turn-helix domain
HTH_31 PF13560 Domain 149 10133 66.80 24 29.09 Changed Helix-turn-helix domain
HTH_32 PF13565 Domain 486 664 74.30 20 27.49 Changed Homeodomain-like domain
HTH_33 PF13592 Domain 87 787 57.50 29 30.89 Changed Winged helix-turn helix
HTH_34 PF13601 Domain 35 545 79.50 32 70.80 Changed Winged helix DNA-binding domain
HTH_35 PF13693 Domain 22 1007 75.70 59 84.66 Changed Winged helix-turn-helix DNA-binding
HTH_36 PF13730 Domain 198 1833 53.80 25 20.10 Changed Helix-turn-helix domain
HTH_37 PF13744 Domain 55 1158 79.70 24 74.93 Changed Helix-turn-helix domain
HTH_38 PF13936 Domain 170 4579 42.50 36 15.56 Changed Helix-turn-helix domain
HTH_39 PF14090 Domain 51 254 65.50 28 53.69 Changed Helix-turn-helix domain
HTH_40 PF14493 Domain 166 1114 91.20 26 16.58 New Helix-turn-helix domain
HTH_41 PF14502 Family 19 338 47.90 75 16.35 New Helix-turn-helix domain
HTH_42 PF06224 Family 119 1653 321.90 24 76.36 Changed Winged helix DNA-binding domain
HTH_43 PF09904 Family 22 301 87.40 50 91.47 Changed Winged helix-turn helix
HTH_44 PF14641 Domain 4 227 131.10 33 8.87 New Helix-turn-helix DNA-binding domain of SPT6
HTH_45 PF14947 Domain 27 290 75.80 24 67.77 New Winged helix-turn-helix
HTH_5 PF01022 Domain 42 9132 47.00 32 34.44 Changed Bacterial regulatory protein, arsR family
HTH_6 PF01418 Domain 10 9722 75.30 25 26.84 Changed Helix-turn-helix domain, rpiR family
HTH_7 PF02796 Domain 14 3816 44.90 28 23.91 Changed Helix-turn-helix domain of resolvase
HTH_8 PF02954 Domain 86 19848 41.30 31 9.21 Changed Bacterial regulatory protein, Fis family
HTH_9 PF08221 Domain 18 285 60.60 30 11.07 Changed RNA polymerase III subunit RPC82 helix-turn-helix domain
HTH_AraC PF00165 Domain 75 482 37.30 26 22.38 Changed Bacterial regulatory helix-turn-helix proteins, AraC family
HTH_AsnC-type PF13404 Domain 347 5527 42.00 35 25.97 Changed AsnC-type helix-turn-helix domain
HTH_CodY PF08222 Domain 3 1097 60.70 76 23.39 Changed CodY helix-turn-helix domain
HTH_Crp_2 PF13545 Domain 94 8343 72.00 22 30.98 Changed Crp-like helix-turn-helix domain
HTH_DeoR PF08220 Domain 15 15183 55.70 33 21.64 Changed DeoR-like helix-turn-helix domain
HTH_IclR PF09339 Domain 93 11639 51.10 26 19.10 Changed IclR helix-turn-helix domain
HTH_Mga PF08280 Domain 16 958 58.10 27 12.18 Changed M protein trans-acting positive regulator (MGA) HTH domain
HTH_OrfB_IS605 PF12323 Family 231 3827 44.80 31 12.81 Changed Helix-turn-helix domain
HTH_psq PF05225 Domain 27 1317 43.90 28 10.93 Changed helix-turn-helix, Psq domain
HTH_Tnp_1 PF01527 Family 45 12930 75.20 20 64.00 Changed Transposase
HTH_Tnp_1_2 PF13022 Domain 4 30 133.90 38 93.68 Changed Helix-turn-helix of insertion element transposase
HTH_Tnp_4 PF13613 Domain 117 1593 50.00 44 29.09 Changed Helix-turn-helix of DDE superfamily endonuclease
HTH_Tnp_IS1 PF12759 Domain 4 1328 42.40 62 42.85 Changed InsA C-terminal domain
HTH_Tnp_IS630 PF01710 Domain 9 1697 102.50 39 76.09 Changed Transposase
HTH_Tnp_ISL3 PF13542 Domain 134 3356 51.40 41 17.15 Changed Helix-turn-helix domain of transposase family ISL3
HTH_Tnp_Mu_1 PF02316 Family 4 448 108.40 21 26.71 Changed Mu DNA-binding domain
HTH_Tnp_Mu_2 PF09039 Domain 6 131 106.80 35 17.57 Changed Mu DNA binding, I gamma subdomain
HTH_Tnp_Tc3_1 PF11427 Family 2 160 47.00 39 24.22 Changed Tc3 transposase
HTH_Tnp_Tc3_2 PF01498 Family 26 1241 65.70 24 22.63 Changed Transposase
HTH_Tnp_Tc5 PF03221 Domain 194 2088 63.10 21 13.60 Changed Tc5 transposase DNA-binding domain
HTH_WhiA PF02650 Domain 23 1969 85.00 46 27.44 Changed WhiA C-terminal HTH domain
HtrL_YibB PF09612 Family 3 269 249.20 59 89.51 Changed Bacterial protein of unknown function (HtrL_YibB)
HTS PF04204 Family 77 2128 290.40 50 95.62 Changed Homoserine O-succinyltransferase
HU-DNA_bdg PF14848 Domain 21 175 122.40 23 58.18 New DNA-binding domain
Humanin PF15040 Family 9 21 24.00 75 97.68 New Humanin family
Hum_adeno_E3A PF05393 Family 3 49 97.20 47 42.85 Changed Human adenovirus early E3A glycoprotein
HUN PF08729 Domain 54 344 52.80 40 6.69 Changed HPC2 and ubinuclein domain
HupE_UreJ PF04955 Family 80 494 177.30 34 89.46 Changed HupE / UreJ protein
HupE_UreJ_2 PF13795 Family 99 405 151.10 36 51.33 Changed HupE / UreJ protein
HupF_HypC PF01455 Family 170 2243 69.50 44 76.37 Changed HupF/HypC family
HupH_C PF04809 Family 36 1273 110.40 37 72.84 Changed HupH hydrogenase expression protein, C-terminal conserved region
Hus1 PF04005 Family 34 342 286.70 24 90.95 Changed Hus1-like protein
HutD PF05962 Family 106 985 176.70 33 90.44 Changed HutD
HutP PF09021 Domain 17 271 131.60 41 90.58 Changed HutP
HVSL PF09749 Family 27 269 211.80 23 79.87 Changed Uncharacterised conserved protein
HWE_HK PF07536 Domain 44 1003 82.20 32 14.48 Changed HWE histidine kinase
HxlR PF01638 Family 14 8192 89.20 34 69.10 Changed HxlR-like helix-turn-helix
HXXEE PF13787 Family 142 380 114.00 21 63.39 Changed Protein of unknown function with HXXEE motif
HxxPF_rpt PF13745 Domain 1348 6665 92.30 29 5.06 Changed HxxPF-repeated domain
HXXSHH PF07586 Family 102 250 302.40 23 67.78 Changed Protein of unknown function (DUF1552)
HyaE PF07449 Family 9 623 106.10 58 75.57 Changed Hydrogenase-1 expression protein HyaE
Hyaluronidase_1 PF07212 Family 2 54 239.80 70 77.07 Changed Hyaluronidase protein (HylP)
HycA_repressor PF11046 Family 4 465 147.90 88 96.20 Changed Transcriptional repressor of hyc and hyp operons
Hyccin PF09790 Family 12 234 266.40 36 61.63 Changed Hyccin
HycH PF07450 Family 19 787 129.60 66 95.41 Changed Formate hydrogenlyase maturation protein HycH
HycI PF01750 Domain 27 2632 127.40 28 73.29 Changed Hydrogenase maturation protease
Hydantoinase_A PF01968 Family 61 2437 281.50 29 34.74 Changed Hydantoinase/oxoprolinase
Hydantoinase_B PF02538 Family 6 1619 505.30 33 58.32 Changed Hydantoinase B/oxoprolinase
Hydant_A_N PF05378 Family 64 2308 178.40 28 21.44 Changed Hydantoinase/oxoprolinase N-terminal region
Hydrolase PF00702 Domain 239 27368 255.00 26 31.25 Changed haloacid dehalogenase-like hydrolase
Hydrolase_2 PF07486 Family 170 1705 105.20 32 42.38 Changed Cell Wall Hydrolase
Hydrolase_3 PF08282 Domain 69 20961 223.30 21 85.03 Changed haloacid dehalogenase-like hydrolase
Hydrolase_4 PF12146 Family 137 1506 80.60 30 22.07 Changed Putative lysophospholipase
Hydrolase_6 PF13344 Domain 179 4798 102.30 28 34.77 Changed Haloacid dehalogenase-like hydrolase
Hydrolase_like PF13242 Domain 437 8522 74.00 26 28.24 Changed HAD-hyrolase-like
Hydrolase_like2 PF13246 Family 225 1746 97.10 34 14.14 Changed Putative hydrolase of sodium-potassium ATPase alpha subunit
Hydrophobin PF01185 Family 69 519 81.40 33 62.51 Changed Fungal hydrophobin
Hydrophobin_2 PF06766 Family 45 136 64.80 45 56.32 Changed Fungal hydrophobin
Hydrophob_seed PF14547 Domain 24 532 81.10 49 49.60 New Hydrophobic seed protein
Hyd_WA PF06462 Family 73 1060 32.70 33 16.01 Changed Propeller
HYLS1_C PF15311 Family 20 80 79.30 40 26.71 New Hydrolethalus syndrome protein 1 C-terminus
HypA PF01155 Family 169 2158 112.50 38 96.54 Changed Hydrogenase expression/synthesis hypA family
HypD PF01924 Family 129 1488 349.00 49 96.11 Changed Hydrogenase formation hypA family
Hyphal_reg_CWP PF11765 Domain 8 149 315.40 33 36.77 Changed Hyphally regulated cell wall protein N-terminal
Hypoth_Ymh PF09509 Family 25 190 120.50 37 43.17 Changed Protein of unknown function (Hypoth_ymh)
HYR PF02494 Domain 19 1816 80.40 30 16.53 Changed HYR domain
H_kinase_N PF12282 Family 64 599 145.90 30 30.13 Changed Signal transduction histidine kinase
H_lectin PF09458 Domain 87 326 71.10 20 18.43 Changed H-type lectin domain
H_PPase PF03030 Family 139 1540 626.60 43 93.38 Changed Inorganic H+ pyrophosphatase
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