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Browse Pfam families

New Top twenty Numbers A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
ID Accession Type Number of sequences Average length Average %id Average coverage Has 3D Change status Description
Seed Full
R-HINP1I PF11463 Family 3 24 187.10 54 83.72 Changed R.HinP1I restriction endonuclease
R3H PF01424 Domain 402 3275 63.80 24 13.76 Changed R3H domain
R3H-assoc PF13902 Domain 32 193 121.20 23 35.98 Changed R3H-associated N-terminal domain
RA PF00788 Domain 54 3464 89.70 17 10.59 Changed Ras association (RalGDS/AF-6) domain
Rab15_effector PF15208 Family 2 26 232.30 61 97.83 New Rab15 effector
Rab3-GTPase_cat PF13890 Family 27 198 158.80 43 18.68 Changed Rab3 GTPase-activating protein catalytic subunit
RAB3GAP2_C PF14656 Family 9 135 456.10 34 43.64 New Rab3 GTPase-activating protein regulatory subunit C-terminus
RAB3GAP2_N PF14655 Family 21 180 330.20 31 32.33 New Rab3 GTPase-activating protein regulatory subunit N-terminus
Rab5-bind PF09311 Family 20 544 165.40 42 29.53 Changed Rabaptin-like protein
Rab5ip PF07019 Family 38 446 82.00 27 60.80 Changed Rab5-interacting protein (Rab5ip)
Rabaptin PF03528 Family 5 248 108.70 41 30.00 Changed Rabaptin
RabGAP-TBC PF00566 Family 101 7104 197.50 19 30.10 Changed Rab-GTPase-TBC domain
RabGGT_insert PF07711 Domain 4 58 98.50 59 19.56 Changed Rab geranylgeranyl transferase alpha-subunit, insert domain
Rab_eff_C PF04698 Domain 7 193 315.90 37 56.40 Changed Rab effector MyRIP/melanophilin C-terminus
Rac1 PF09632 Domain 2 33 287.60 85 40.67 Changed Rac1-binding domain
Racemase_4 PF13615 Domain 39 179 102.40 37 17.07 Changed Putative alanine racemase
Rad1 PF02144 Family 26 354 238.90 27 75.42 Changed Repair protein Rad1/Rec1/Rad17
Rad10 PF03834 Family 26 301 67.50 46 21.96 Changed Binding domain of DNA repair protein Ercc1 (rad10/Swi10)
Rad17 PF03215 Family 3 406 329.80 21 56.41 Changed Rad17 cell cycle checkpoint protein
Rad21_Rec8 PF04824 Family 16 498 52.40 30 8.40 Changed Conserved region of Rad21 / Rec8 like protein
Rad21_Rec8_N PF04825 Family 49 651 112.00 34 17.91 Changed N terminus of Rad21 / Rec8 like protein
Rad33 PF08730 Family 9 47 135.10 37 77.88 Changed Rad33
Rad4 PF03835 Domain 41 550 136.50 22 18.13 Changed Rad4 transglutaminase-like domain
Rad50_zn_hook PF04423 Motif 32 262 53.50 26 4.97 Changed Rad50 zinc hook motif
Rad51 PF08423 Domain 20 2467 183.50 30 69.83 Changed Rad51
Rad52_Rad22 PF04098 Family 35 602 137.00 28 43.84 Changed Rad52/22 family double-strand break repair protein
Rad54_N PF08658 Family 24 204 167.20 29 20.79 Changed Rad54 N terminal
Rad60-SLD PF11976 Family 42 1068 69.50 32 32.96 Changed Ubiquitin-2 like Rad60 SUMO-like
Rad60-SLD_2 PF13881 Domain 24 319 106.70 29 62.84 Changed Ubiquitin-2 like Rad60 SUMO-like
Rad9 PF04139 Family 16 382 232.50 24 56.82 Changed Rad9
Rad9_Rad53_bind PF08605 Family 8 79 136.30 29 10.55 Changed Fungal Rad9-like Rad53-binding
RadC PF04002 Family 107 5120 118.30 39 57.04 Changed RadC-like JAB domain
Radial_spoke PF04712 Family 22 369 295.50 22 75.46 Changed Radial spokehead-like protein
Radial_spoke_3 PF06098 Family 14 179 265.80 39 61.68 Changed Radial spoke protein 3
Radical_SAM PF04055 Domain 628 65493 169.40 14 43.97 Changed Radical SAM superfamily
Radical_SAM_N PF08497 Family 100 1422 328.40 58 47.65 Changed Radical SAM N-terminal
Raffinose_syn PF05691 Family 11 570 368.90 23 73.23 Changed Raffinose synthase or seed imbibition protein Sip1
Raftlin PF15250 Family 19 145 348.00 40 86.42 New Raftlin
RAG1 PF12940 Family 3 12026 335.50 71 76.21 Changed Recombination-activation protein 1 (RAG1)
RAG2 PF03089 Family 18 5792 268.30 58 91.61 Changed Recombination activating protein 2
RAG2_PHD PF13341 Domain 6 1007 55.10 80 13.56 Changed RAG2 PHD domain
RAI1 PF08652 Family 31 357 69.10 34 17.75 Changed RAI1 like PD-(D/E)XK nuclease
RAI16-like PF10257 Family 27 432 336.50 29 42.16 Changed Retinoic acid induced 16-like protein
Ral PF11058 Family 2 90 53.70 89 99.79 Changed Antirestriction protein Ral
RALF PF05498 Family 34 313 64.10 36 55.35 Changed Rapid ALkalinization Factor (RALF)
RAM PF15320 Family 24 82 82.00 43 64.28 New mRNA cap methylation, RNMT-activating mini protein
RAMP PF04901 Family 19 191 108.10 39 71.27 Changed Receptor activity modifying family
RAMP4 PF06624 Family 16 291 60.90 43 70.61 Changed Ribosome associated membrane protein RAMP4
RAMPs PF03787 Family 154 1749 234.30 14 68.48 Changed RAMP superfamily
Ran-binding PF05508 Family 18 126 299.00 40 58.01 Changed RanGTP-binding protein
RanGAP1_C PF07834 Domain 3 102 173.50 54 32.44 Changed RanGAP1 C-terminal domain
Ran_BP1 PF00638 Family 8 1512 115.30 30 23.31 Changed RanBP1 domain
RAP PF08373 Domain 79 594 58.80 25 8.24 Changed RAP domain
RAP-1 PF03085 Family 12 102 195.70 39 57.46 Changed Rhoptry-associated protein 1 (RAP-1)
RAP1 PF07218 Family 2 109 637.70 65 99.73 Changed Rhoptry-associated protein 1 (RAP-1)
Rap1-DNA-bind PF09197 Domain 19 53 114.20 39 17.31 Changed Rap1, DNA-binding
Rap1_C PF11626 Family 81 175 88.60 26 15.59 Changed TRF2-interacting telomeric protein/Rap1 - C terminal domain
Rapamycin_bind PF08771 Domain 38 401 98.30 52 4.38 Changed Rapamycin binding domain
RapA_C PF12137 Domain 50 1007 352.20 58 38.01 Changed RNA polymerase recycling family C-terminal
Rapsyn_N PF10579 Family 4 91 78.90 50 17.87 Changed Rapsyn N-terminal myristoylation and linker region
Raptor_N PF14538 Domain 48 343 148.00 52 11.29 New Raptor N-terminal CASPase like domain
Rap_GAP PF02145 Family 54 1221 181.80 35 14.83 Changed Rap/ran-GAP
Ras PF00071 Domain 61 21243 151.90 29 62.64 Changed Ras family
RasGAP PF00616 Family 115 1769 183.90 26 14.50 Changed GTPase-activator protein for Ras-like GTPase
RasGAP_C PF03836 Family 38 469 133.50 33 10.26 Changed RasGAP C-terminus
RasGEF PF00617 Family 148 3434 186.00 25 19.95 Changed RasGEF domain
RasGEF_N PF00618 Domain 88 2431 105.10 21 10.42 Changed RasGEF N-terminal motif
RasGEF_N_2 PF14663 Domain 35 251 112.50 36 8.19 New Rapamycin-insensitive companion of mTOR RasGEF_N domain
Ras_bdg_2 PF14847 Domain 35 148 108.10 33 12.03 New Ras-binding domain of Byr2
Rav1p_C PF12234 Family 13 405 467.30 29 21.95 Changed RAVE protein 1 C terminal
Rax2 PF12768 Family 34 157 251.50 25 23.26 Changed Cortical protein marker for cell polarity
RBB1NT PF08169 Domain 7 171 96.30 50 8.53 Changed RBB1NT (NUC162) domain
RbcS PF12338 Family 46 352 40.00 53 24.28 Changed Ribulose-1,5-bisphosphate carboxylase small subunit
RBD PF02196 Domain 10 710 70.50 30 9.82 Changed Raf-like Ras-binding domain
RBD-FIP PF09457 Motif 19 430 44.20 41 7.00 Changed FIP domain
RBDV_coat PF06593 Family 2 18 272.80 94 100.00 Changed Raspberry bushy dwarf virus coat protein
RBFA PF02033 Family 183 4543 105.00 34 77.59 Changed Ribosome-binding factor A
RBM1CTR PF08081 Family 8 128 45.30 69 12.12 Changed RBM1CTR (NUC064) family
RBM39linker PF15519 Domain 26 417 75.20 32 17.17 New linker between RRM2 and RRM3 domains in RBM39 protein
RBP_receptor PF14752 Family 10 202 404.80 30 72.30 New Retinol binding protein receptor
RbsD_FucU PF05025 Family 133 2765 134.10 35 98.06 Changed RbsD / FucU transport protein family
Rbsn PF11464 Domain 6 155 41.40 48 9.63 Changed Rabenosyn Rab binding domain
RB_A PF01858 Domain 7 366 188.10 38 21.11 Changed Retinoblastoma-associated protein A domain
RB_B PF01857 Domain 6 352 140.60 39 15.49 Changed Retinoblastoma-associated protein B domain
Rb_C PF08934 Domain 6 127 125.00 55 15.18 Changed Rb C-terminal domain
RC-P840_PscD PF10657 Family 8 13 142.40 66 98.98 Changed Photosystem P840 reaction centre protein PscD
RcbX PF02341 Family 16 676 109.20 67 78.97 Changed RbcX protein
RCC1 PF00415 Repeat 104 14888 51.30 29 20.18 Changed Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 Repeat 320 3569 29.90 34 6.54 Changed Regulator of chromosome condensation (RCC1) repeat
RCC_reductase PF06405 Family 8 86 202.40 42 84.35 Changed Red chlorophyll catabolite reductase (RCC reductase)
Rcd1 PF04078 Family 27 453 238.70 58 77.46 Changed Cell differentiation family, Rcd1-like
RCR PF12273 Family 29 193 129.30 23 66.82 Changed Chitin synthesis regulation, resistance to Congo red
RcsC PF09456 Domain 12 546 91.90 68 9.90 Changed RcsC Alpha-Beta-Loop (ABL)
RCSD PF05177 Family 4 51 87.60 41 11.71 Changed RCSD region
RD3 PF14473 Family 17 73 130.30 43 66.10 New RD3 protein
RDD PF06271 Family 114 4557 135.70 17 61.94 Changed RDD family
RdgC PF04381 Family 71 1392 288.20 47 96.62 Changed Putative exonuclease, RdgC
RDM PF11002 Domain 23 72 42.00 65 13.91 Changed RFPL defining motif (RDM)
RdRP PF05183 Family 94 667 486.90 23 46.88 Changed RNA dependent RNA polymerase
RdRP_1 PF00680 Domain 39 14992 228.60 22 27.06 Changed RNA dependent RNA polymerase
RdRP_2 PF00978 Family 36 2606 250.60 22 29.18 Changed RNA dependent RNA polymerase
RdRP_3 PF00998 Family 33 17276 190.90 62 44.48 Changed Viral RNA dependent RNA polymerase
RdRP_4 PF02123 Family 28 1146 427.20 31 60.01 Changed Viral RNA-directed RNA-polymerase
RdRP_5 PF07925 Family 3 118 466.00 63 99.55 Changed Reovirus RNA-dependent RNA polymerase lambda 3
RDV-p3 PF09231 Domain 2 12 964.70 62 94.51 Changed Rice dwarf virus p3
Rdx PF10262 Family 82 990 87.60 31 61.58 Changed Rdx family
RebB PF11747 Family 32 294 66.90 41 67.18 Changed Killing trait
REC114-like PF15165 Family 7 59 177.40 46 87.50 New Meiotic recombination protein REC114-like
RecA PF00154 Family 28 12149 240.80 66 92.66 Changed recA bacterial DNA recombination protein
Receptor_2B4 PF11465 Domain 4 44 106.40 44 31.50 Changed Natural killer cell receptor 2B4
Receptor_IA-2 PF11548 Family 6 114 83.70 52 9.80 Changed Protein-tyrosine phosphatase receptor IA-2
Recep_L_domain PF01030 Domain 68 2555 112.50 25 20.58 Changed Receptor L domain
Recombinase PF07508 Family 73 4989 105.20 23 21.67 Changed Recombinase
RecO_C PF02565 Family 157 3973 151.60 18 61.19 Changed Recombination protein O C terminal
RecO_N PF11967 Domain 154 4019 78.10 27 31.53 Changed Recombination protein O N terminal
RecO_N_2 PF13114 Family 24 198 71.10 66 34.33 Changed RecO N terminal
RecQ5 PF06959 Family 2 54 185.70 53 21.94 Changed RecQ helicase protein-like 5 (RecQ5)
RecR PF02132 Family 192 4246 41.00 38 20.52 Changed RecR protein
RecT PF03837 Family 81 1551 180.60 24 65.71 Changed RecT family
RecU PF03838 Domain 43 1337 163.20 48 83.68 Changed Recombination protein U
RecX PF02631 Family 147 4223 117.80 22 66.09 Changed RecX family
Red1 PF07964 Family 6 28 598.10 30 82.59 Changed Rec10 / Red1
Redoxin PF08534 Domain 68 9684 140.60 20 71.03 Changed Redoxin
Reductase_C PF14759 Domain 153 1813 82.00 28 19.73 New Reductase C-terminal
RED_C PF07807 Family 7 152 113.50 59 20.48 Changed RED-like protein C-terminal region
RED_N PF07808 Family 8 299 188.50 30 37.54 Changed RED-like protein N-terminal region
Reeler PF02014 Family 40 496 122.60 24 18.03 Changed Reeler domain
REF PF05755 Family 10 99 182.90 39 85.39 Changed Rubber elongation factor protein (REF)
REGB_T4 PF10715 Family 14 136 142.10 24 90.69 Changed Endoribonuclease RegB T4-bacteriophage encoded
Regulator_TrmB PF11495 Family 30 611 147.60 19 52.42 Changed Archaeal transcriptional regulator TrmB
Reg_prop PF07494 Repeat 668 7311 23.90 33 6.00 Changed Two component regulator propeller
REJ PF02010 Family 25 1075 274.00 15 21.55 Changed REJ domain
Relaxase PF03432 Family 17 2990 226.00 16 49.85 Changed Relaxase/Mobilisation nuclease domain
RelA_SpoT PF04607 Family 102 8755 115.20 41 20.29 Changed Region found in RelA / SpoT proteins
RelB PF04221 Family 6 2614 79.40 22 87.15 Changed RelB antitoxin
RelB_N PF12910 Domain 97 364 44.10 28 52.34 Changed Antitoxin of toxin-antitoxin stability system N-terminal
RELT PF12606 Family 17 207 48.90 35 22.33 Changed Tumour necrosis factor receptor superfamily member 19
Remorin_C PF03763 Family 28 381 105.30 33 31.49 Changed Remorin, C-terminal region
Remorin_N PF03766 Family 5 55 59.00 43 30.80 Changed Remorin, N-terminal region
Renin_r PF07850 Family 8 137 95.90 43 27.64 Changed Renin receptor-like protein
Reoviridae_Vp9 PF08978 Domain 2 12 187.80 64 93.29 Changed Reoviridae VP9
Reovirus_cap PF00979 Family 5 149 250.80 49 98.83 Changed Reovirus outer capsid protein, Sigma 3
Reovirus_L2 PF06016 Family 4 56 1162.20 43 99.73 Changed Reovirus core-spike protein lambda-2 (L2)
Reovirus_M2 PF05993 Family 2 56 614.20 48 98.52 Changed Reovirus major virion structural protein Mu-1/Mu-1C (M2)
Reovirus_Mu2 PF07781 Family 5 53 726.00 44 99.09 Changed Reovirus minor core protein Mu-2
Reo_P9 PF06043 Family 4 51 262.00 57 99.91 Changed Reovirus P9-like family
Reo_sigma1 PF01664 Family 3 60 208.30 62 46.59 Changed Reovirus viral attachment protein sigma 1
Reo_sigmaC PF04582 Family 4 160 239.10 45 97.25 Changed Reovirus sigma C capsid protein
Rep-A_N PF04057 Domain 11 381 97.50 29 16.47 Changed Replication factor-A protein 1, N-terminal domain
RepA1_leader PF08048 Family 5 34 24.40 70 100.00 Changed Tap RepA1 leader peptide
RepA_C PF04796 Family 10 189 157.60 32 48.85 Changed Plasmid encoded RepA protein
RepA_N PF06970 Family 55 1268 73.30 38 29.74 Changed Replication initiator protein A (RepA) N-terminus
RepB PF07506 Family 15 449 167.50 21 53.66 Changed RepB plasmid partitioning protein
RepB-RCR_reg PF10723 Family 15 388 75.20 41 85.33 Changed Replication regulatory protein RepB
RepC PF06504 Family 5 105 265.80 61 93.70 Changed Replication protein C (RepC)
RepL PF05732 Family 4 349 118.70 27 83.06 Changed Firmicute plasmid replication protein (RepL)
Replicase PF03090 Family 15 361 124.40 36 38.95 Changed Replicase family
Replic_Relax PF13814 Family 47 432 165.50 19 62.86 Changed Replication-relaxation
Repressor_Mnt PF11423 Family 3 59 29.60 66 36.09 Changed Regulatory protein Mnt
Reprolysin PF01421 Domain 38 3201 190.20 28 23.35 Changed Reprolysin (M12B) family zinc metalloprotease
Reprolysin_2 PF13574 Domain 49 431 181.20 21 27.86 Changed Metallo-peptidase family M12B Reprolysin-like
Reprolysin_3 PF13582 Domain 94 288 129.40 19 22.22 Changed Metallo-peptidase family M12B Reprolysin-like
Reprolysin_4 PF13583 Domain 9 268 164.50 15 27.17 Changed Metallo-peptidase family M12B Reprolysin-like
Reprolysin_5 PF13688 Family 48 463 203.10 22 28.71 Changed Metallo-peptidase family M12
Rep_1 PF01446 Family 25 775 156.80 31 69.80 Changed Replication protein
Rep_2 PF01719 Family 24 278 182.60 27 74.28 Changed Plasmid replication protein
Rep_3 PF01051 Family 166 2007 220.10 17 69.43 Changed Initiator Replication protein
Rep_4 PF05797 Family 6 16 267.80 26 83.62 Changed Yeast trans-acting factor (REP1/REP2)
Rep_fac-A_3 PF08661 Family 22 305 107.40 23 87.79 Changed Replication factor A protein 3
Rep_fac-A_C PF08646 Family 33 798 135.40 23 24.30 Changed Replication factor-A C terminal domain
Rep_fac_C PF08542 Domain 117 1565 89.50 21 25.10 Changed Replication factor C C-terminal domain
Rep_N PF08724 Domain 9 213 158.90 41 26.63 Changed Rep protein catalytic domain like
Rep_Org_C PF06926 Family 3 25 91.90 62 35.97 Changed Putative replisome organiser protein C-terminus
Rep_trans PF02486 Family 84 1463 187.80 25 54.34 Changed Replication initiation factor
Requiem_N PF14051 Family 13 277 71.30 70 19.10 Changed N-terminal domain of DPF2/REQ.
Rer1 PF03248 Family 34 427 163.90 50 84.44 Changed Rer1 family
RES PF08808 Domain 184 1322 164.20 15 70.86 Changed RES domain
ResB PF05140 Family 127 1951 307.30 18 58.66 Changed ResB-like family
ResIII PF04851 Family 55 18536 160.50 19 20.83 Changed Type III restriction enzyme, res subunit
Resistin PF06954 Family 11 72 82.10 54 76.16 Changed Resistin
Resolvase PF00239 Domain 222 13550 133.80 24 45.62 Changed Resolvase, N terminal domain
RESP18 PF14948 Family 6 113 96.30 40 14.55 New RESP18 domain
Response_reg PF00072 Domain 57 151337 111.60 26 30.95 Changed Response regulator receiver domain
RestrictionMunI PF11407 Family 2 9 168.90 46 99.93 Changed Type II restriction enzyme MunI
RestrictionSfiI PF11487 Family 2 6 235.80 54 95.61 Changed Type II restriction enzyme SfiI
Reticulon PF02453 Family 90 1346 158.90 25 44.60 Changed Reticulon
Retinal PF15449 Family 14 48 990.40 43 96.82 New Retinal protein
Retinin_C PF04527 Family 18 168 73.70 44 54.73 Changed Drosophila Retinin like protein
Retrotrans_gag PF03732 Family 57 4914 92.40 19 10.14 Changed Retrotransposon gag protein
Retro_M PF02813 Family 3 206 81.30 90 16.63 Changed Retroviral M domain
Ret_tiss PF10044 Family 7 126 89.70 44 69.00 Changed Retinal tissue protein
REV PF00424 Family 13 15943 83.00 60 88.13 Changed REV protein (anti-repression trans-activator protein)
RE_AccI PF09545 Family 2 13 229.80 29 92.59 Changed AccI restriction endonuclease
RE_Alw26IDE PF09665 Family 7 16 493.30 51 93.32 Changed Type II restriction endonuclease (RE_Alw26IDE)
RE_AlwI PF09491 Family 18 173 374.30 18 73.57 Changed AlwI restriction endonuclease
RE_ApaLI PF09499 Family 6 327 56.80 51 84.36 Changed ApaLI-like restriction endonuclease
RE_Bpu10I PF09549 Family 8 25 190.50 33 72.57 Changed Bpu10I restriction endonuclease
RE_Bsp6I PF09504 Family 3 17 169.30 53 94.55 Changed Bsp6I restriction endonuclease
RE_BstXI PF09552 Family 3 10 279.30 35 80.40 Changed BstXI restriction endonuclease
RE_CfrBI PF09516 Family 5 36 257.80 52 84.94 Changed CfrBI restriction endonuclease
RE_Eco29kI PF09517 Family 6 60 164.70 44 74.26 Changed Eco29kI restriction endonuclease
RE_Eco47II PF09553 Family 6 64 190.80 44 79.26 Changed Eco47II restriction endonuclease
RE_EcoO109I PF14511 Family 22 53 194.80 28 76.72 New Type II restriction endonuclease EcoO109I
RE_HaeII PF09554 Family 4 29 315.50 69 92.61 Changed HaeII restriction endonuclease
RE_HaeIII PF09556 Family 4 54 272.30 48 88.81 Changed HaeIII restriction endonuclease
RE_HindIII PF09518 Family 5 26 278.00 34 94.43 Changed HindIII restriction endonuclease
RE_HindVP PF09519 Family 3 41 255.10 38 90.73 Changed HindVP restriction endonuclease
RE_HpaII PF09561 Family 9 103 324.40 40 95.57 Changed HpaII restriction endonuclease
RE_LlaJI PF09563 Family 12 86 346.80 21 74.68 Changed LlaJI restriction endonuclease
RE_LlaMI PF09562 Family 2 7 262.00 54 98.34 Changed LlaMI restriction endonuclease
RE_MamI PF09567 Family 2 5 274.20 30 84.58 Changed MamI restriction endonuclease
RE_MjaI PF09568 Family 7 42 169.30 31 84.26 Changed MjaI restriction endonuclease
RE_NgoBV PF09564 Family 2 50 197.50 69 96.74 Changed NgoBV restriction endonuclease
RE_NgoFVII PF09565 Domain 7 72 252.10 24 71.27 Changed NgoFVII restriction endonuclease
RE_NgoPII PF09521 Family 4 62 186.50 42 93.41 Changed NgoPII restriction endonuclease
RE_R_Pab1 PF09522 Domain 5 56 116.20 69 53.14 Changed R.Pab1 restriction endonuclease
RE_SacI PF09566 Family 3 10 348.70 27 95.43 Changed SacI restriction endonuclease
RE_ScaI PF09569 Family 4 14 172.00 47 93.08 Changed ScaI restriction endonuclease
RE_SinI PF09570 Family 3 15 215.10 37 92.89 Changed SinI restriction endonuclease
RE_TaqI PF09573 Family 4 13 199.50 46 95.09 Changed TaqI restriction endonuclease
RE_TdeIII PF09520 Family 11 54 233.10 26 89.78 Changed Type II restriction endonuclease, TdeIII
RE_XamI PF09572 Family 5 29 214.40 35 79.36 Changed XamI restriction endonuclease
RE_XcyI PF09571 Family 3 13 292.30 44 93.16 Changed XcyI restriction endonuclease
RF-1 PF00472 Family 100 11930 115.70 40 37.79 Changed RF-1 domain
RFamide_26RFa PF11109 Family 3 30 123.40 60 97.11 Changed Orexigenic neuropeptide Qrfp/P518
RFC1 PF08519 Domain 48 368 150.00 36 16.87 Changed Replication factor RFC1 C terminal domain
RFPL3_antisense PF10489 Family 6 31 71.80 47 51.62 Changed Ret finger protein-like 3 antisense
Rft-1 PF04506 Family 4 365 394.10 23 88.38 Changed Rft protein
RFX1_trans_act PF04589 Family 8 197 135.80 50 21.09 Changed RFX1 transcription activation region
RFX5_DNA_bdg PF14621 Domain 7 47 211.40 75 35.26 New RFX5 DNA-binding domain
RFXA_RFXANK_bdg PF15289 Domain 7 62 118.50 71 58.86 New Regulatory factor X-associated C-terminal binding domain
RFX_DNA_binding PF02257 Domain 34 732 83.20 43 10.10 Changed RFX DNA-binding domain
RGCC PF15151 Family 7 49 124.20 66 97.60 New Response gene to complement 32 protein family
RGM_C PF06534 Family 23 234 170.90 49 43.56 Changed Repulsive guidance molecule (RGM) C-terminus
RGM_N PF06535 Family 14 210 164.30 57 41.22 Changed Repulsive guidance molecule (RGM) N-terminus
RGP PF03214 Family 4 169 299.80 50 91.75 Changed Reversibly glycosylated polypeptide
Rgp1 PF08737 Family 30 392 254.90 21 59.05 Changed Rgp1
RgpF PF05045 Family 7 464 322.40 20 50.84 Changed Rhamnan synthesis protein F
RGS PF00615 Domain 74 4150 120.60 21 22.88 Changed Regulator of G protein signaling domain
RGS-like PF09128 Domain 9 251 172.50 40 14.50 Changed Regulator of G protein signalling-like domain
RhaA PF06134 Family 5 861 402.70 65 97.99 Changed L-rhamnose isomerase (RhaA)
Rhabdo_glycop PF00974 Family 8 3017 333.50 41 96.20 Changed Rhabdovirus spike glycoprotein
Rhabdo_M1 PF03342 Family 4 24 221.50 62 98.90 Changed Rhabdovirus M1 matrix protein (M1 polymerase-associated protein)
Rhabdo_M2 PF04785 Family 4 134 202.00 89 99.89 Changed Rhabdovirus matrix protein M2
Rhabdo_matrix PF03397 Family 10 35 165.90 66 85.60 Changed Rhabdovirus matrix protein
Rhabdo_ncap PF00945 Family 11 7911 200.80 64 92.45 Changed Rhabdovirus nucleocapsid protein
Rhabdo_ncap_2 PF03216 Family 4 252 172.00 65 94.19 Changed Rhabdovirus nucleoprotein
Rhabdo_NV PF02484 Family 2 24 110.50 88 99.66 Changed Rhabdovirus Non-virion protein
Rhamnogal_lyase PF06045 Family 13 168 162.80 35 28.74 Changed Rhamnogalacturonate lyase family
Rhamno_transf PF11316 Family 30 99 203.30 22 69.03 Changed Putative rhamnosyl transferase
RhaT PF06379 Family 2 639 313.70 70 99.30 Changed L-rhamnose-proton symport protein (RhaT)
RHD PF00554 Domain 21 1068 154.90 36 22.50 Changed Rel homology domain (RHD)
RHD3 PF05879 Family 8 439 457.00 25 63.95 Changed Root hair defective 3 GTP-binding protein (RHD3)
RhgB_N PF09284 Domain 6 102 228.70 42 45.15 Changed Rhamnogalacturonase B, N-terminal
RHH_1 PF01402 Domain 49 5913 38.40 24 37.71 Changed Ribbon-helix-helix protein, copG family
RHH_2 PF03693 Family 5 1166 77.80 31 88.88 Changed Uncharacterised protein family (UPF0156)
RHH_3 PF12651 Domain 28 354 42.50 33 41.58 Changed Ribbon-helix-helix domain
RHH_4 PF13467 Domain 57 610 68.70 37 66.55 Changed Ribbon-helix-helix domain
RHIM PF12721 Family 28 243 48.60 23 10.48 Changed RIP homotypic interaction motif
RHINO PF15319 Family 18 48 219.60 49 98.14 New RAD9, RAD1, HUS1-interacting nuclear orphan protein
Rhodanese PF00581 Domain 147 30295 101.90 20 44.29 Changed Rhodanese-like domain
RhodobacterPufX PF11511 Family 5 18 66.20 38 84.78 Changed Intrinsic membrane protein PufX
Rhodopsin_N PF10413 Domain 17 2285 30.00 80 15.25 Changed Amino terminal of the G-protein receptor rhodopsin
RhoGAP PF00620 Domain 87 7538 147.00 25 17.80 Changed RhoGAP domain
RhoGEF PF00621 Domain 192 7395 174.70 22 17.10 Changed RhoGEF domain
Rhomboid PF01694 Family 65 7854 148.00 23 48.95 Changed Rhomboid family
Rhomboid_SP PF12595 Family 31 130 199.70 59 25.43 Changed Rhomboid serine protease
Rho_Binding PF08912 Domain 22 184 67.40 56 5.32 Changed Rho Binding
Rho_GDI PF02115 Domain 16 507 181.80 38 87.83 Changed RHO protein GDP dissociation inhibitor
Rho_N PF07498 Family 139 3972 41.90 35 9.71 Changed Rho termination factor, N-terminal domain
Rho_RNA_bind PF07497 Domain 16 3771 77.10 55 16.60 Changed Rho termination factor, RNA-binding domain
RHS PF03527 Family 18 2442 39.60 54 4.56 Changed RHS protein
RHSP PF07999 Family 3 829 307.10 29 57.65 Changed Retrotransposon hot spot protein
RHS_repeat PF05593 Repeat 203 21340 38.60 28 15.02 Changed RHS Repeat
Rhv PF00073 Domain 50 28435 144.60 21 43.85 Changed picornavirus capsid protein
Rib PF08428 Repeat 16 1574 66.80 33 17.85 Changed Rib/alpha-like repeat
RIB43A PF05914 Family 13 202 312.80 31 95.74 Changed RIB43A
RibD_C PF01872 Family 27 7001 188.90 22 66.43 Changed RibD C-terminal domain
Ribonuclease PF00545 Domain 80 855 88.20 33 48.99 Changed ribonuclease
Ribonuclease_3 PF00636 Family 239 3186 113.60 26 26.36 Changed Ribonuclease III domain
Ribonuclease_P PF00825 Family 141 4169 107.70 28 88.95 Changed Ribonuclease P
Ribonuclease_T2 PF00445 Domain 116 3203 162.70 25 76.12 Changed Ribonuclease T2 family
Ribonucleas_3_2 PF11469 Family 3 14 118.40 62 88.42 Changed Ribonuclease III
Ribonucleas_3_3 PF14622 Family 70 4780 128.80 40 47.56 New Ribonuclease-III-like
Ribonuc_2-5A PF06479 Family 32 447 126.20 36 13.94 Changed Ribonuclease 2-5A
Ribonuc_L-PSP PF01042 Domain 30 11334 116.70 29 81.61 Changed Endoribonuclease L-PSP
Ribonuc_P_40 PF08584 Family 15 216 217.90 26 71.17 Changed Ribonuclease P 40kDa (Rpp40) subunit
Ribonuc_red_2_N PF08471 Family 47 480 99.30 52 8.97 Changed Class II vitamin B12-dependent ribonucleotide reductase
Ribonuc_red_lgC PF02867 Family 136 8373 423.00 26 65.30 Changed Ribonucleotide reductase, barrel domain
Ribonuc_red_lgN PF00317 Domain 137 5796 77.40 30 10.10 Changed Ribonucleotide reductase, all-alpha domain
Ribonuc_red_sm PF00268 Domain 13 7021 239.00 25 82.28 Changed Ribonucleotide reductase, small chain
Ribophorin_I PF04597 Family 40 386 397.90 32 80.96 Changed Ribophorin I
Ribophorin_II PF05817 Family 9 364 381.10 26 91.52 Changed Oligosaccharyltransferase subunit Ribophorin II
Ribosomal_60s PF00428 Family 107 2118 88.10 32 53.35 Changed 60s Acidic ribosomal protein
Ribosomal_L1 PF00687 Domain 255 5940 212.10 38 87.56 Changed Ribosomal protein L1p/L10e family
Ribosomal_L10 PF00466 Family 158 5754 98.80 30 50.84 Changed Ribosomal protein L10
Ribosomal_L11 PF00298 Domain 171 5449 69.30 49 46.79 Changed Ribosomal protein L11, RNA binding domain
Ribosomal_L11_N PF03946 Domain 167 5468 58.80 56 39.60 Changed Ribosomal protein L11, N-terminal domain
Ribosomal_L12 PF00542 Domain 191 5164 67.20 57 51.44 Changed Ribosomal protein L7/L12 C-terminal domain
Ribosomal_L13 PF00572 Family 115 5540 124.90 46 81.05 Changed Ribosomal protein L13
Ribosomal_L13e PF01294 Family 6 596 161.50 47 82.53 Changed Ribosomal protein L13e
Ribosomal_L14 PF00238 Domain 103 6114 119.80 57 97.21 Changed Ribosomal protein L14p/L23e
Ribosomal_L14e PF01929 Family 53 552 73.10 34 48.58 Changed Ribosomal protein L14
Ribosomal_L15e PF00827 Family 57 759 176.40 58 88.23 Changed Ribosomal L15
Ribosomal_L16 PF00252 Family 141 7936 118.30 47 88.89 Changed Ribosomal protein L16p/L10e
Ribosomal_L17 PF01196 Family 153 4802 101.60 51 72.16 Changed Ribosomal protein L17
Ribosomal_L18ae PF01775 Domain 63 714 104.30 44 66.40 Changed Ribosomal L18ae/LX protein domain
Ribosomal_L18e PF00828 Family 104 6291 118.70 35 75.86 Changed Ribosomal protein L18e/L15
Ribosomal_L18p PF00861 Family 33 5752 116.10 39 83.74 Changed Ribosomal L18p/L5e family
Ribosomal_L18_c PF14204 Domain 90 635 87.50 41 31.06 Changed Ribosomal L18 C-terminal region
Ribosomal_L19 PF01245 Family 127 4774 113.20 52 88.03 Changed Ribosomal protein L19
Ribosomal_L19e PF01280 Family 63 764 138.90 55 54.02 Changed Ribosomal protein L19e
Ribosomal_L2 PF00181 Domain 50 6547 76.40 54 28.40 Changed Ribosomal Proteins L2, RNA binding domain
Ribosomal_L20 PF00453 Family 129 5432 104.60 52 89.30 Changed Ribosomal protein L20
Ribosomal_L21e PF01157 Family 6 896 94.60 51 64.65 Changed Ribosomal protein L21e
Ribosomal_L21p PF00829 Family 67 4725 95.10 44 82.00 Changed Ribosomal prokaryotic L21 protein
Ribosomal_L22 PF00237 Domain 126 6446 106.90 41 78.62 Changed Ribosomal protein L22p/L17e
Ribosomal_L22e PF01776 Family 35 584 110.50 52 81.65 Changed Ribosomal L22e protein family
Ribosomal_L23 PF00276 Family 12 6180 88.90 36 80.46 Changed Ribosomal protein L23
Ribosomal_L23eN PF03939 Family 47 612 56.00 52 33.22 Changed Ribosomal protein L23, N-terminal domain
Ribosomal_L24e PF01246 Family 7 1060 67.60 43 44.21 Changed Ribosomal protein L24e
Ribosomal_L25p PF01386 Domain 184 3556 87.40 33 49.38 Changed Ribosomal L25p family
Ribosomal_L27 PF01016 Family 88 4787 80.80 60 81.70 Changed Ribosomal L27 protein
Ribosomal_L27e PF01777 Family 42 533 82.70 49 58.62 Changed Ribosomal L27e protein family
Ribosomal_L28 PF00830 Family 114 4841 59.80 39 73.86 Changed Ribosomal L28 family
Ribosomal_L28e PF01778 Family 67 772 113.20 30 53.54 Changed Ribosomal L28e protein family
Ribosomal_L29 PF00831 Family 156 5085 57.70 41 77.08 Changed Ribosomal L29 protein
Ribosomal_L29e PF01779 Family 30 523 39.40 67 40.99 Changed Ribosomal L29e protein family
Ribosomal_L2_C PF03947 Domain 58 6875 124.70 56 47.82 Changed Ribosomal Proteins L2, C-terminal domain
Ribosomal_L3 PF00297 Family 13 5795 198.80 40 84.21 Changed Ribosomal protein L3
Ribosomal_L30 PF00327 Domain 115 5033 51.90 37 54.41 Changed Ribosomal protein L30p/L7e
Ribosomal_L30_N PF08079 Domain 70 661 68.80 34 28.50 Changed Ribosomal L30 N-terminal domain
Ribosomal_L31 PF01197 Family 163 5588 73.20 45 92.06 Changed Ribosomal protein L31
Ribosomal_L31e PF01198 Family 59 847 81.00 49 67.39 Changed Ribosomal protein L31e
Ribosomal_L32e PF01655 Family 75 903 103.50 53 78.33 Changed Ribosomal protein L32
Ribosomal_L32p PF01783 Family 171 5348 53.90 34 82.85 Changed Ribosomal L32p protein family
Ribosomal_L33 PF00471 Family 117 6317 49.00 45 90.31 Changed Ribosomal protein L33
Ribosomal_L34 PF00468 Family 143 4214 43.90 63 86.81 Changed Ribosomal protein L34
Ribosomal_L34e PF01199 Family 52 630 89.50 47 77.16 Changed Ribosomal protein L34e
Ribosomal_L35Ae PF01247 Family 44 533 93.90 51 77.29 Changed Ribosomal protein L35Ae
Ribosomal_L35p PF01632 Family 22 4520 60.70 44 86.05 Changed Ribosomal protein L35
Ribosomal_L36 PF00444 Domain 108 5148 38.20 58 90.83 Changed Ribosomal protein L36
Ribosomal_L36e PF01158 Family 39 534 94.80 52 79.12 Changed Ribosomal protein L36e
Ribosomal_L37 PF08561 Family 23 304 89.50 29 61.01 Changed Mitochondrial ribosomal protein L37
Ribosomal_L37ae PF01780 Family 55 636 86.00 53 92.54 Changed Ribosomal L37ae protein family
Ribosomal_L37e PF01907 Family 46 667 50.80 56 57.37 Changed Ribosomal protein L37e
Ribosomal_L38e PF01781 Family 26 458 68.40 56 82.79 Changed Ribosomal L38e protein family
Ribosomal_L39 PF00832 Family 44 553 42.30 60 75.51 Changed Ribosomal L39 protein
Ribosomal_L4 PF00573 Family 165 5579 191.40 36 83.57 Changed Ribosomal protein L4/L1 family
Ribosomal_L40e PF01020 Family 3 580 48.80 64 40.21 Changed Ribosomal L40e family
Ribosomal_L41 PF05162 Family 3 137 24.80 85 51.88 Changed Ribosomal protein L41
Ribosomal_L44 PF00935 Family 44 678 76.10 56 65.83 Changed Ribosomal protein L44
Ribosomal_L5 PF00281 Domain 17 5354 56.40 51 30.97 Changed Ribosomal protein L5
Ribosomal_L50 PF10501 Domain 30 196 108.30 23 36.59 Changed Ribosomal subunit 39S
Ribosomal_L5_C PF00673 Domain 133 5473 95.30 53 52.03 Changed ribosomal L5P family C-terminus
Ribosomal_L6 PF00347 Domain 132 10746 74.40 26 80.83 Changed Ribosomal protein L6
Ribosomal_L6e PF01159 Family 46 607 102.90 43 45.55 Changed Ribosomal protein L6e
Ribosomal_L6e_N PF03868 Domain 19 310 59.80 38 24.76 Changed Ribosomal protein L6, N-terminal domain
Ribosomal_L7Ae PF01248 Domain 54 5260 91.70 23 56.33 Changed Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Ribosomal_L9_C PF03948 Domain 147 4474 87.20 34 56.38 Changed Ribosomal protein L9, C-terminal domain
Ribosomal_L9_N PF01281 Domain 157 4600 48.00 47 29.79 Changed Ribosomal protein L9, N-terminal domain
Ribosomal_S10 PF00338 Family 193 5735 96.50 50 83.97 Changed Ribosomal protein S10p/S20e
Ribosomal_S11 PF00411 Family 13 6124 109.70 55 79.77 Changed Ribosomal protein S11
Ribosomal_S13 PF00416 Family 15 5791 105.00 49 84.93 Changed Ribosomal protein S13/S18
Ribosomal_S13_N PF08069 Domain 64 646 58.50 55 38.20 Changed Ribosomal S13/S15 N-terminal domain
Ribosomal_S14 PF00253 Family 178 6805 54.30 45 63.36 Changed Ribosomal protein S14p/S29e
Ribosomal_S15 PF00312 Domain 9 5932 82.00 44 77.02 Changed Ribosomal protein S15
Ribosomal_S16 PF00886 Family 158 5911 56.10 47 58.89 Changed Ribosomal protein S16
Ribosomal_S17 PF00366 Domain 15 5324 68.80 50 69.69 Changed Ribosomal protein S17
Ribosomal_S17e PF00833 Family 32 683 107.30 53 84.61 Changed Ribosomal S17
Ribosomal_S18 PF01084 Family 121 5681 53.20 50 56.97 Changed Ribosomal protein S18
Ribosomal_S19 PF00203 Domain 22 7420 78.30 55 82.39 Changed Ribosomal protein S19
Ribosomal_S19e PF01090 Family 62 756 128.00 43 85.22 Changed Ribosomal protein S19e
Ribosomal_S2 PF00318 Family 177 7370 185.10 40 79.94 Changed Ribosomal protein S2
Ribosomal_S20p PF01649 Family 14 4402 80.90 41 93.95 Changed Ribosomal protein S20
Ribosomal_S21 PF01165 Family 140 4324 57.00 45 77.38 Changed Ribosomal protein S21
Ribosomal_S21e PF01249 Family 36 472 79.10 54 76.04 Changed Ribosomal protein S21e
Ribosomal_S22 PF08136 Family 3 402 44.90 88 97.59 Changed 30S ribosomal protein subunit S22 family
Ribosomal_S24e PF01282 Family 70 778 83.90 46 63.63 Changed Ribosomal protein S24e
Ribosomal_S25 PF03297 Family 24 591 102.30 49 83.60 Changed S25 ribosomal protein
Ribosomal_S26e PF01283 Family 37 581 107.20 56 86.00 Changed Ribosomal protein S26e
Ribosomal_S27 PF01599 Domain 12 740 45.60 58 31.50 Changed Ribosomal protein S27a
Ribosomal_S27e PF01667 Family 7 748 54.30 62 63.75 Changed Ribosomal protein S27
Ribosomal_S28e PF01200 Family 38 607 67.10 58 88.74 Changed Ribosomal protein S28e
Ribosomal_S30 PF04758 Family 23 515 57.30 61 58.05 Changed Ribosomal protein S30
Ribosomal_S30AE PF02482 Family 144 5238 96.10 30 63.58 Changed Sigma 54 modulation protein / S30EA ribosomal protein
Ribosomal_S3Ae PF01015 Family 69 888 191.30 50 82.23 Changed Ribosomal S3Ae family
Ribosomal_S3_C PF00189 Domain 124 7624 82.90 50 31.68 Changed Ribosomal protein S3, C-terminal domain
Ribosomal_S4 PF00163 Family 18 11914 83.20 44 43.67 Changed Ribosomal protein S4/S9 N-terminal domain
Ribosomal_S4e PF00900 Family 81 821 75.80 52 30.43 Changed Ribosomal family S4e
Ribosomal_S4Pg PF11993 Family 19 166 163.90 44 97.59 Changed Ribosomal S4P (gammaproteobacterial)
Ribosomal_S5 PF00333 Domain 13 5805 66.50 52 34.20 Changed Ribosomal protein S5, N-terminal domain
Ribosomal_S5_C PF03719 Domain 114 5623 73.10 45 37.14 Changed Ribosomal protein S5, C-terminal domain
Ribosomal_S6 PF01250 Domain 180 4748 91.70 35 77.12 Changed Ribosomal protein S6
Ribosomal_S6e PF01092 Family 7 798 116.50 52 53.22 Changed Ribosomal protein S6e
Ribosomal_S7 PF00177 Domain 166 7992 146.70 44 86.24 Changed Ribosomal protein S7p/S5e
Ribosomal_S7e PF01251 Family 27 599 174.90 53 92.14 Changed Ribosomal protein S7e
Ribosomal_S8 PF00410 Domain 119 6129 126.70 42 95.88 Changed Ribosomal protein S8
Ribosomal_S8e PF01201 Family 93 1149 194.20 35 92.35 Changed Ribosomal protein S8e
Ribosomal_S9 PF00380 Family 183 5483 121.50 50 81.31 Changed Ribosomal protein S9/S16
Ribosomal_TL5_C PF14693 Domain 195 2672 88.30 28 43.06 New Ribosomal protein TL5, C-terminal domain
Ribosom_S12_S23 PF00164 Family 18 6678 119.60 62 94.59 Changed Ribosomal protein S12/S23
Ribos_L4_asso_C PF14374 Domain 64 472 78.60 42 21.13 Changed 60S ribosomal protein L4 C-terminal domain
Ribul_P_3_epim PF00834 Domain 13 6022 198.40 43 88.92 Changed Ribulose-phosphate 3 epimerase family
Rib_5-P_isom_A PF06026 Family 58 3557 171.00 42 74.26 Changed Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Rib_hydrolayse PF02267 Domain 12 149 212.20 38 81.23 Changed ADP-ribosyl cyclase
Rib_recp_KP_reg PF05104 Family 6 77 127.50 54 14.53 Changed Ribosome receptor lysine/proline rich region
RIC1 PF07064 Family 21 304 244.90 30 21.67 Changed RIC1
RIC3 PF15361 Family 27 152 158.40 28 37.52 New Resistance to inhibitors of cholinesterase homologue 3
Ric8 PF10165 Family 23 341 380.40 31 83.45 Changed Guanine nucleotide exchange factor synembryn
RICH PF05062 Domain 26 495 74.10 40 17.91 Changed RICH domain
RicinB_lectin_2 PF14200 Domain 49 1501 100.70 22 25.03 Changed Ricin-type beta-trefoil lectin domain-like
Ricin_B_lectin PF00652 Domain 97 3906 120.80 19 22.78 Changed Ricin-type beta-trefoil lectin domain
Rick_17kDa_Anti PF05433 Family 174 3882 41.70 44 28.29 Changed Glycine zipper 2TM domain
RICTOR_M PF14666 Domain 51 266 212.50 34 15.33 New Rapamycin-insensitive companion of mTOR, middle domain
RICTOR_N PF14664 Domain 30 301 316.30 29 26.27 New Rapamycin-insensitive companion of mTOR, N-term
RICTOR_phospho PF14665 Domain 4 57 105.60 69 6.89 New Rapamycin-insensitive companion of mTOR, phosphorylation-site
RICTOR_V PF14668 Domain 32 251 73.00 41 5.33 New Rapamycin-insensitive companion of mTOR, domain 5
Rieske PF00355 Domain 146 13057 94.20 19 31.33 Changed Rieske [2Fe-2S] domain
Rieske_2 PF13806 Domain 77 1917 103.40 36 52.55 Changed Rieske-like [2Fe-2S] domain
Rif1_N PF12231 Family 34 226 323.80 22 19.96 Changed Rap1-interacting factor 1 N terminal
Rifin_STEVOR PF02009 Family 16 412 288.50 30 96.01 Changed Rifin/stevor family
RIG-I_C-RD PF11648 Family 14 227 117.10 32 14.61 Changed C-terminal domain of RIG-I
RIH_assoc PF08454 Family 43 718 120.10 46 3.81 Changed RyR and IP3R Homology associated
RIIa PF02197 Domain 13 656 37.00 33 10.58 Changed Regulatory subunit of type II PKA R-subunit
RII_binding_1 PF10522 Motif 14 161 18.00 44 1.91 Changed RII binding domain
RILP PF11461 Family 14 188 59.20 43 18.62 Changed Rab interacting lysosomal protein
RimK PF08443 Domain 5 2606 177.30 31 43.97 Changed RimK-like ATP-grasp domain
RimM PF01782 Domain 170 4228 83.60 27 46.27 Changed RimM N-terminal domain
RinB PF06116 Family 6 399 48.60 80 91.72 Changed Transcriptional activator RinB
RINGv PF12906 Domain 26 1986 50.00 37 10.43 Changed RING-variant domain
Ring_hydroxyl_A PF00848 Domain 128 4563 206.60 16 58.44 Changed Ring hydroxylating alpha subunit (catalytic domain)
Ring_hydroxyl_B PF00866 Domain 44 1346 141.90 28 83.48 Changed Ring hydroxylating beta subunit
RINT1_TIP1 PF04437 Family 19 318 430.90 22 62.61 Changed RINT-1 / TIP-1 family
RIO1 PF01163 Family 28 1707 172.30 27 45.74 Changed RIO1 family
Rio2_N PF09202 Domain 29 449 80.70 43 19.50 Changed Rio2, N-terminal
RIP PF00161 Domain 73 945 197.20 29 61.64 Changed Ribosome inactivating protein
Ripply PF14998 Family 16 104 82.20 50 63.51 New Transcription Regulator
RIX1 PF08167 Domain 37 221 166.40 23 20.46 Changed rRNA processing/ribosome biogenesis
RL11D PF11088 Family 4 33 87.50 44 92.09 Changed Glycoprotein encoding membrane proteins RL5A and RL6
RLAN PF14401 Family 87 317 151.70 37 31.83 Changed RimK-like ATPgrasp N-terminal domain
RLI PF04068 Family 80 889 33.10 36 7.40 Changed Possible Fer4-like domain in RNase L inhibitor, RLI
RLL PF10036 Family 15 168 220.70 42 95.44 Changed Putative carnitine deficiency-associated protein
RloB PF13707 Domain 120 422 178.60 20 87.08 Changed RloB-like protein
RMF PF04957 Family 27 514 54.70 67 89.99 Changed Ribosome modulation factor
RmlD_sub_bind PF04321 Domain 37 4012 276.30 30 91.82 Changed RmlD substrate binding domain
RMMBL PF07521 Motif 138 6209 40.50 33 7.13 Changed RNA-metabolising metallo-beta-lactamase
RMP PF14996 Family 14 77 137.00 40 62.04 New Retinal Maintenance
RmuC PF02646 Family 23 2678 298.80 31 66.14 Changed RmuC family
RNA12 PF10443 Family 18 149 416.20 37 49.99 Changed RNA12 protein
RnaseA PF00074 Domain 108 847 119.30 33 78.61 Changed Pancreatic ribonuclease
RNaseH_C PF09293 Domain 8 45 115.00 40 38.84 Changed T4 RNase H, C terminal
RNase_E_G PF10150 Family 173 4570 263.90 41 37.13 Changed Ribonuclease E/G family
RNase_H PF00075 Domain 65 16967 121.40 50 20.38 Changed RNase H
RNase_H2-Ydr279 PF09468 Family 42 345 283.10 21 86.68 Changed Ydr279p protein family (RNase H2 complex component)
RNase_H2_suC PF08615 Family 43 277 130.50 24 66.56 Changed Ribonuclease H2 non-catalytic subunit (Ylr154p-like)
RNase_HII PF01351 Family 14 6064 182.20 35 75.83 Changed Ribonuclease HII
RNase_H_2 PF13482 Domain 108 1043 173.30 19 32.29 Changed RNase_H superfamily
RNase_PH PF01138 Domain 192 13598 132.80 29 40.48 Changed 3' exoribonuclease family, domain 1
RNase_PH_C PF03725 Domain 107 12290 69.10 29 20.56 Changed 3' exoribonuclease family, domain 2
RNase_P_p30 PF01876 Family 62 477 141.70 25 49.82 Changed RNase P subunit p30
RNase_P_pop3 PF08228 Family 5 88 156.70 25 65.50 Changed RNase P subunit Pop3
RNase_P_Rpp14 PF01900 Family 65 500 109.40 22 67.85 Changed Rpp14/Pop5 family
RNase_T PF00929 Family 57 17634 160.30 21 36.06 Changed Exonuclease
RNase_Zc3h12a PF11977 Domain 28 659 146.30 36 23.62 Changed Zc3h12a-like Ribonuclease NYN domain
RNase_Zc3h12a_2 PF14626 Family 5 17 116.20 32 19.74 New Zc3h12a-like Ribonuclease NYN domain
RNA_bind PF08675 Domain 2 85 81.40 61 14.59 Changed RNA binding domain
RNA_binding PF01877 Family 52 277 115.90 25 77.86 Changed RNA binding
RNA_bind_2 PF10133 Family 20 129 60.10 34 92.39 Changed Predicted RNA-binding protein
RNA_capsid PF03035 Family 34 896 183.40 57 98.34 Changed Calicivirus putative RNA polymerase/capsid protein
RNA_GG_bind PF10258 Domain 17 161 81.30 37 19.68 Changed PHAX RNA-binding domain
RNA_helicase PF00910 Domain 99 3937 96.30 36 6.53 Changed RNA helicase
RNA_ligase PF09414 Family 22 428 184.40 19 55.28 Changed RNA ligase
RNA_lig_T4_1 PF09511 Family 48 347 216.60 26 33.56 Changed RNA ligase
RNA_Me_trans PF04252 Family 3 169 195.20 42 90.41 Changed Predicted SAM-dependent RNA methyltransferase
RNA_pol PF00940 Family 94 680 385.90 35 41.81 Changed DNA-dependent RNA polymerase
RNA_polI_A14 PF08203 Family 17 47 79.80 43 51.19 Changed Yeast RNA polymerase I subunit RPA14
RNA_polI_A34 PF08208 Family 25 173 209.50 20 59.28 Changed DNA-directed RNA polymerase I subunit RPA34.5
RNA_pol_3_Rpc31 PF11705 Family 17 327 213.80 25 92.96 Changed DNA-directed RNA polymerase III subunit Rpc31
RNA_pol_A_bac PF01000 Domain 59 7300 120.20 33 38.59 Changed RNA polymerase Rpb3/RpoA insert domain
RNA_pol_A_CTD PF03118 Domain 121 5961 65.70 44 20.39 Changed Bacterial RNA polymerase, alpha chain C terminal domain
RNA_pol_I_A49 PF06870 Family 24 337 321.60 20 82.87 Changed A49-like RNA polymerase I associated factor
RNA_pol_I_TF PF04090 Family 10 106 186.60 21 39.59 Changed RNA polymerase I specific initiation factor
RNA_pol_L PF01193 Domain 218 7433 199.80 31 64.81 Changed RNA polymerase Rpb3/Rpb11 dimerisation domain
RNA_pol_L_2 PF13656 Domain 53 756 75.70 37 58.93 Changed RNA polymerase Rpb3/Rpb11 dimerisation domain
RNA_POL_M_15KD PF02150 Domain 10 723 35.70 34 27.56 Changed RNA polymerases M/15 Kd subunit
RNA_pol_N PF01194 Domain 49 498 60.50 55 79.07 Changed RNA polymerases N / 8 kDa subunit
RNA_pol_Rbc25 PF08292 Domain 33 328 116.40 35 51.74 Changed RNA polymerase III subunit Rpc25
RNA_pol_Rpa2_4 PF06883 Domain 31 319 58.50 41 5.23 Changed RNA polymerase I, Rpa2 specific domain
RNA_pol_Rpb1_1 PF04997 Domain 24 12239 254.70 33 31.57 Changed RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_2 PF00623 Domain 33 13383 133.80 57 17.84 Changed RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3 PF04983 Domain 112 9996 147.50 24 14.34 Changed RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_4 PF05000 Domain 106 8924 93.40 29 8.38 Changed RNA polymerase Rpb1, domain 4
RNA_pol_Rpb1_5 PF04998 Domain 27 9187 395.80 25 36.28 Changed RNA polymerase Rpb1, domain 5
RNA_pol_Rpb1_6 PF04992 Domain 153 1575 157.90 39 18.62 Changed RNA polymerase Rpb1, domain 6
RNA_pol_Rpb1_7 PF04990 Domain 42 792 119.00 55 10.85 Changed RNA polymerase Rpb1, domain 7
RNA_pol_Rpb1_R PF05001 Repeat 99 4609 14.20 79 15.78 Changed RNA polymerase Rpb1 C-terminal repeat
RNA_pol_Rpb2_1 PF04563 Family 21 11314 301.50 26 35.23 Changed RNA polymerase beta subunit
RNA_pol_Rpb2_2 PF04561 Domain 22 13001 126.70 21 18.82 Changed RNA polymerase Rpb2, domain 2
RNA_pol_Rpb2_3 PF04565 Domain 31 16867 63.90 55 9.45 Changed RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_4 PF04566 Domain 12 7585 61.70 56 13.64 Changed RNA polymerase Rpb2, domain 4
RNA_pol_Rpb2_45 PF10385 Domain 149 8806 66.20 46 8.12 Changed RNA polymerase beta subunit external 1 domain
RNA_pol_Rpb2_5 PF04567 Domain 64 7512 64.00 49 13.61 Changed RNA polymerase Rpb2, domain 5
RNA_pol_Rpb2_6 PF00562 Domain 117 16703 307.10 35 46.19 Changed RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7 PF04560 Domain 134 7219 79.50 52 6.84 Changed RNA polymerase Rpb2, domain 7
RNA_pol_Rpb4 PF03874 Family 88 790 113.00 23 70.54 Changed RNA polymerase Rpb4
RNA_pol_Rpb5_C PF01191 Domain 64 636 72.50 49 38.79 Changed RNA polymerase Rpb5, C-terminal domain
RNA_pol_Rpb5_N PF03871 Domain 36 436 95.30 34 42.69 Changed RNA polymerase Rpb5, N-terminal domain
RNA_pol_Rpb6 PF01192 Family 57 4597 54.00 32 56.84 Changed RNA polymerase Rpb6
RNA_pol_Rpb8 PF03870 Family 7 366 131.00 41 90.57 Changed RNA polymerase Rpb8
RNA_pol_Rpc34 PF05158 Family 20 415 252.70 25 92.27 Changed RNA polymerase Rpc34 subunit
RNA_pol_Rpc4 PF05132 Family 36 332 126.50 25 30.42 Changed RNA polymerase III RPC4
RNA_pol_Rpc82 PF05645 Family 29 304 231.10 19 43.22 Changed RNA polymerase III subunit RPC82
RNA_pol_Rpo13 PF12136 Domain 7 23 46.10 56 46.09 Changed RNA polymerase Rpo13 subunit HTH domain
RNA_replicase_B PF03431 Family 6 321 252.20 52 80.15 Changed RNA replicase, beta-chain
RNB PF00773 Domain 86 6644 308.20 33 41.36 Changed RNB domain
Rnf-Nqr PF02508 Family 128 4543 193.80 38 92.91 Changed Rnf-Nqr subunit, membrane protein
RNF111_N PF15303 Family 13 116 236.70 51 37.61 New E3 ubiquitin-protein ligase Arkadia N-terminus
RnfC_N PF13375 Domain 96 1912 94.90 37 16.91 Changed RnfC Barrel sandwich hybrid domain
RNHCP PF12647 Domain 27 115 87.30 46 61.11 Changed RNHCP domain
Rnk_N PF14760 Domain 110 932 41.70 54 29.57 New Rnk N-terminus
RNR_inhib PF08591 Family 23 119 95.50 25 41.59 Changed Ribonucleotide reductase inhibitor
RNR_N PF08343 Family 65 2010 80.30 42 11.63 Changed Ribonucleotide reductase N-terminal
Robl_LC7 PF03259 Domain 41 1879 90.00 22 65.84 Changed Roadblock/LC7 domain
Rod-binding PF10135 Family 174 1787 49.40 36 20.68 Changed Rod binding protein
Rod_C PF10493 Domain 6 118 461.60 32 29.23 Changed Rough deal protein C-terminal region
Rod_cone_degen PF15201 Family 5 14 49.10 76 96.08 New Progressive rod-cone degeneration
ROF PF07073 Family 31 733 74.20 59 89.79 Changed Modulator of Rho-dependent transcription termination (ROF)
Rogdi_lz PF10259 Family 24 229 258.20 25 80.33 Changed Rogdi leucine zipper containing protein
ROK PF00480 Family 14 15339 179.30 24 53.05 Changed ROK family
ROKNT PF08067 Domain 4 131 42.40 79 10.24 Changed ROKNT (NUC014) domain
RolB_RolC PF02027 Family 41 119 190.50 20 62.83 Changed RolB/RolC glucosidase family
Romo1 PF10247 Family 19 272 65.30 47 65.22 Changed Reactive mitochondrial oxygen species modulator 1
rOmpB PF12334 Family 9 158 200.30 77 15.45 Changed Rickettsia outer membrane protein B
Rootletin PF15035 Family 29 212 174.70 35 10.71 New Ciliary rootlet component, centrosome cohesion
Root_cap PF06830 Family 18 153 55.20 54 17.43 Changed Root cap
Rop PF01815 Domain 12 216 57.70 73 91.23 Changed Rop protein
Rop-like PF05082 Family 32 142 64.10 40 88.76 Changed Rop-like
Rossmann-like PF10727 Domain 8 557 118.70 31 39.88 Changed Rossmann-like domain
ROS_MUCR PF05443 Family 127 729 123.90 40 78.76 Changed ROS/MUCR transcriptional regulator protein
Rot1 PF10681 Family 28 127 202.10 44 86.02 Changed Chaperone for protein-folding within the ER, fungal
Rotamase PF00639 Domain 87 5141 93.40 30 34.16 Changed PPIC-type PPIASE domain
Rotamase_2 PF13145 Domain 206 2673 123.40 20 28.69 Changed PPIC-type PPIASE domain
Rotamase_3 PF13616 Domain 68 3691 115.00 30 30.29 Changed PPIC-type PPIASE domain
Rotavirus_VP1 PF12289 Family 2 470 51.00 94 5.17 Changed Rotavirus VP1 structural protein
Rotavirus_VP3 PF06929 Family 3 582 551.40 85 83.42 Changed Rotavirus VP3 protein
Rotavirus_VP7 PF05868 Family 3 112 217.90 65 99.92 Changed Rotavirus major outer capsid protein VP7
Rota_Capsid_VP6 PF00980 Family 3 1454 234.90 80 99.79 Changed Rotavirus major capsid protein VP6
Rota_NS26 PF01525 Family 6 556 185.60 87 99.47 Changed Rotavirus NS26
Rota_NS35 PF02509 Family 3 493 301.10 90 99.67 Changed Rotavirus non-structural protein 35
Rota_NS53 PF00981 Family 14 573 455.80 70 99.18 Changed Rotavirus RNA-binding Protein 53 (NS53)
Rota_NS6 PF04866 Family 12 253 91.00 90 99.27 Changed Rotavirus non-structural protein 6
Rota_NSP3 PF01665 Family 6 508 266.80 87 89.08 Changed Rotavirus non-structural protein NSP3
Rota_NSP4 PF01452 Family 5 1516 169.00 81 99.03 Changed Rotavirus non structural protein
Rota_VP2 PF05087 Family 3 539 737.00 88 99.98 Changed Rotavirus VP2 protein
Roughex PF06020 Family 3 54 283.40 60 98.36 Changed Drosophila roughex protein
Rox3 PF08633 Family 13 111 192.60 34 59.81 Changed Rox3 mediator complex subunit
RP-C PF03428 Domain 52 484 159.10 41 44.88 Changed Replication protein C N-terminal domain
RP-C_C PF11800 Family 53 475 181.40 26 51.77 Changed Replication protein C C-terminal region
RP1-2 PF12042 Domain 17 225 156.70 38 69.36 Changed Tubuliform egg casing silk strands structural domain
RPA PF10134 Family 32 404 222.40 33 63.88 Changed Replication initiator protein A
RPAP1_C PF08620 Family 35 280 73.90 43 7.90 Changed RPAP1-like, C-terminal
RPAP1_N PF08621 Family 39 266 48.20 35 5.46 Changed RPAP1-like, N-terminal
RPAP2_Rtr1 PF04181 Family 45 383 76.20 28 20.32 Changed Rtr1/RPAP2 family
RPAP3_C PF13877 Domain 50 325 93.70 25 18.61 Changed Potential Monad-binding region of RPAP3
RPA_C PF08784 Domain 23 349 100.20 20 37.20 Changed Replication protein A C terminal
RPA_interact_C PF14768 Family 50 138 80.90 31 35.91 New Replication protein A interacting C-terminal
RPA_interact_M PF14767 Family 27 109 74.40 36 36.46 New Replication protein A interacting middle
RPA_interact_N PF14766 Family 25 123 41.10 45 19.07 New Replication protein A interacting N-terminal
RPE65 PF03055 Family 151 2113 396.50 24 89.26 Changed Retinal pigment epithelial membrane protein
RPEL PF02755 Family 54 1765 25.80 41 10.30 Changed RPEL repeat
RPM2 PF08579 Family 6 46 122.10 36 10.25 Changed Mitochondrial ribonuclease P subunit (RPM2)
Rpn3_C PF08375 Family 24 366 65.90 51 13.11 Changed Proteasome regulatory subunit C-terminal
RPN7 PF10602 Family 63 673 171.80 30 40.18 Changed 26S proteasome subunit RPN7
rpo132 PF12415 Family 13 82 32.80 64 2.89 Changed Poxvirus DNA dependent RNA polymerase
rpo30_N PF12410 Family 12 114 133.60 70 60.24 Changed Poxvirus DNA dependent RNA polymerase 30kDa subunit
RPOL_N PF14700 Domain 126 554 279.60 19 28.13 New DNA-directed RNA polymerase N-terminal
Rpp20 PF12328 Family 44 133 130.40 29 71.76 Changed Rpp20 subunit of nuclear RNase MRP and P
Rpr2 PF04032 Family 86 508 95.70 24 51.13 Changed RNAse P Rpr2/Rpp21/SNM1 subunit domain
RPT PF13446 Domain 66 317 60.80 23 12.16 Changed A repeated domain in UCH-protein
RPW8 PF05659 Family 10 146 131.50 27 27.49 Changed Arabidopsis broad-spectrum mildew resistance protein RPW8
RQC PF09382 Domain 174 3296 104.30 30 14.90 Changed RQC domain
RraB PF06877 Domain 67 1287 103.70 42 67.55 Changed Regulator of ribonuclease activity B
RRF PF01765 Domain 133 4805 163.70 46 86.18 Changed Ribosome recycling factor
Rrf2 PF02082 Family 118 8068 81.20 29 53.34 Changed Transcriptional regulator
RRF_GI PF12614 Family 21 130 124.00 55 96.85 Changed Ribosome recycling factor
RRM PF10378 Domain 7 104 54.50 47 6.11 Changed Putative RRM domain
RRM_1 PF00076 Domain 79 50512 67.70 24 23.75 Changed RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_2 PF04059 Family 4 387 92.10 44 16.81 Changed RNA recognition motif 2
RRM_3 PF08777 Domain 15 306 99.90 29 22.53 Changed RNA binding motif
RRM_4 PF10598 Domain 25 346 92.10 69 4.12 Changed RNA recognition motif of the spliceosomal PrP8
RRM_5 PF13893 Domain 106 5485 56.70 21 11.51 Changed RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_6 PF14259 Domain 76 8811 69.90 20 16.00 Changed RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)
RRM_DME PF15628 Family 21 84 95.50 62 7.39 New RRM in Demeter
RRN3 PF05327 Family 33 404 426.80 23 78.29 Changed RNA polymerase I specific transcription initiation factor RRN3
Rrn6 PF10214 Family 19 144 591.40 16 77.63 Changed RNA polymerase I-specific transcription-initiation factor
RRN7 PF11781 Domain 25 186 34.60 32 6.39 Changed RNA polymerase I-specific transcription initiation factor Rrn7
RRN9 PF10680 Domain 22 106 72.80 33 14.00 Changed RNA polymerase I specific transcription initiation factor
RrnaAD PF00398 Domain 20 6621 241.80 28 87.89 Changed Ribosomal RNA adenine dimethylase
rRNA_methylase PF06962 Family 17 1285 135.50 43 72.68 Changed Putative rRNA methylase
rRNA_proc-arch PF13234 Domain 86 683 215.90 22 22.40 Changed rRNA-processing arch domain
rRNA_processing PF08524 Domain 7 187 123.90 23 64.94 Changed rRNA processing
RRP14 PF15459 Family 54 167 56.80 45 11.77 New 60S ribosome biogenesis protein Rrp14
Rrp15p PF07890 Family 32 310 139.90 30 50.85 Changed Rrp15p
RRP7 PF12923 Family 61 327 124.30 31 42.70 Changed Ribosomal RNA-processing protein 7 (RRP7)
RRS1 PF04939 Family 33 347 161.40 38 57.87 Changed Ribosome biogenesis regulatory protein (RRS1)
RRXRR PF14239 Family 49 361 159.60 40 43.18 Changed RRXRR protein
RR_TM4-6 PF06459 Family 21 301 247.80 36 6.13 Changed Ryanodine Receptor TM 4-6
RS4NT PF08071 Domain 34 754 36.40 62 14.46 Changed RS4NT (NUC023) domain
Rsa3 PF14615 Family 29 100 47.10 37 24.20 New Ribosome-assembly protein 3
RsbRD_N PF14361 Family 74 220 103.70 21 39.90 Changed RsbT co-antagonist protein rsbRD N-terminal domain
Rsbr_N PF08678 Domain 9 83 130.20 46 47.84 Changed Rsbr N terminal
RsbU_N PF08673 Domain 14 334 77.00 54 22.08 Changed Phosphoserine phosphatase RsbU, N-terminal domain
Rsc14 PF08586 Family 5 27 100.30 60 53.69 Changed RSC complex, Rsc14/Ldb7 subunit
RSD-2 PF07547 Domain 7 25 86.50 29 13.64 Changed RSD-2 N-terminal domain
Rsd_AlgQ PF04353 Family 45 788 150.50 57 94.34 Changed Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ
RseA_C PF03873 Domain 40 851 55.60 58 26.46 Changed Anti sigma-E protein RseA, C-terminal domain
RseA_N PF03872 Domain 35 1145 93.30 42 44.32 Changed Anti sigma-E protein RseA, N-terminal domain
RseC_MucC PF04246 Family 118 1246 133.00 33 87.61 Changed Positive regulator of sigma(E), RseC/MucC
RSF PF14876 Family 5 29 327.70 73 82.81 New Respiratory growth transcriptional regulator
RsgI_N PF12791 Family 52 279 56.00 24 13.15 Changed Anti-sigma factor N-terminus
RskA PF10099 Family 90 784 181.70 20 72.39 Changed Anti-sigma-K factor rskA
Rsm1 PF08600 Domain 11 189 89.60 23 20.42 Changed Rsm1-like
Rsm22 PF09243 Family 7 679 228.70 20 53.83 Changed Mitochondrial small ribosomal subunit Rsm22
RsmJ PF04378 Domain 8 1570 241.30 46 87.23 Changed Ribosomal RNA small subunit methyltransferase D, RsmJ
RSN1_TM PF13967 Family 177 1182 153.80 22 17.75 Changed Late exocytosis, associated with Golgi transport
RSS_P20 PF11757 Family 3 159 143.10 82 81.60 Changed Suppressor of RNA silencing P21-like
RST PF12174 Domain 16 135 69.30 31 11.44 Changed RCD1-SRO-TAF4 (RST) plant domain
RSV_NS2 PF03113 Family 2 45 123.40 90 100.00 Changed Respiratory synctial virus non-structural protein NS2
RTA1 PF04479 Family 6 1213 215.40 25 69.27 Changed RTA1 like protein
RTBV_P12 PF06361 Family 3 11 100.10 90 100.00 Changed Rice tungro bacilliform virus P12 protein
RTBV_P46 PF06216 Family 2 12 388.60 77 100.00 Changed Rice tungro bacilliform virus P46 protein
RTC PF01137 Domain 29 1194 309.70 31 89.51 Changed RNA 3'-terminal phosphate cyclase
RTC4 PF14474 Domain 38 169 120.40 28 26.24 New RTC4-like domain
RtcB PF01139 Family 136 2812 317.50 32 93.53 Changed tRNA-splicing ligase RtcB
RtcR PF06956 Family 17 470 182.20 74 34.98 Changed Regulator of RNA terminal phosphate cyclase
RTC_insert PF05189 Domain 99 1028 100.70 29 28.85 Changed RNA 3'-terminal phosphate cyclase (RTC), insert domain
RteC PF09357 Family 17 391 175.30 27 80.01 Changed RteC protein
Rtf2 PF04641 Family 23 575 231.20 20 66.07 Changed Rtf2 RING-finger
RTP PF02334 Domain 3 54 119.40 66 98.83 Changed Replication terminator protein
RTP801_C PF07809 Family 9 137 115.20 45 52.81 Changed RTP801 C-terminal region
Rtt102p PF09510 Family 6 33 128.50 40 65.10 Changed Rtt102p-like transcription regulator protein
Rtt106 PF08512 Domain 156 861 92.10 27 12.65 Changed Histone chaperone Rttp106-like
RTTN_N PF14726 Family 25 85 97.60 43 5.77 New Rotatin, an armadillo repeat protein, centriole functioning
RTX PF02382 Family 8 309 490.10 49 61.72 Changed RTX N-terminal domain
RtxA PF07634 Repeat 99 3103 18.50 35 20.18 Changed RtxA repeat
RTX_C PF08339 Family 11 230 136.40 36 15.23 Changed RTX C-terminal domain
Rubella_Capsid PF05750 Family 3 110 208.20 97 34.49 Changed Rubella capsid protein
Rubella_E1 PF05748 Family 2 838 312.50 94 88.37 Changed Rubella membrane glycoprotein E1
Rubella_E2 PF05749 Family 3 68 267.00 97 26.88 Changed Rubella membrane glycoprotein E2
Rubis-subs-bind PF09273 Domain 43 613 124.40 18 24.97 Changed Rubisco LSMT substrate-binding
RuBisCO_large PF00016 Domain 16 53466 226.70 77 64.51 Changed Ribulose bisphosphate carboxylase large chain, catalytic domain
RuBisCO_large_N PF02788 Domain 16 48498 118.10 84 32.42 Changed Ribulose bisphosphate carboxylase large chain, N-terminal domain
RuBisCO_small PF00101 Domain 48 1831 80.90 41 69.50 Changed Ribulose bisphosphate carboxylase, small chain
Rubi_NSP_C PF12601 Family 3 69 55.10 100 3.83 Changed Rubivirus non-structural protein
Rubredoxin PF00301 Domain 43 2943 46.10 48 23.38 Changed Rubredoxin
Rubrerythrin PF02915 Domain 38 3551 115.30 23 56.86 Changed Rubrerythrin
RUN PF02759 Family 50 1686 138.00 21 18.38 Changed RUN domain
Runt PF00853 Domain 6 488 119.90 74 31.17 Changed Runt domain
RunxI PF08504 Family 9 243 96.50 68 23.14 Changed Runx inhibition domain
RusA PF05866 Family 96 2230 112.50 30 86.93 Changed Endodeoxyribonuclease RusA
RuvA_C PF07499 Domain 100 4234 46.70 32 23.40 Changed RuvA, C-terminal domain
RuvA_N PF01330 Domain 33 4290 61.10 36 30.56 Changed RuvA N terminal domain
RuvB_C PF05491 Family 126 4372 75.80 54 22.41 Changed Holliday junction DNA helicase ruvB C-terminus
RuvB_N PF05496 Family 110 5721 210.90 46 58.50 Changed Holliday junction DNA helicase ruvB N-terminus
RuvC PF02075 Domain 9 3205 147.50 43 83.83 Changed Crossover junction endodeoxyribonuclease RuvC
rve PF00665 Domain 230 47519 111.40 27 21.34 Changed Integrase core domain
rve_2 PF13333 Family 38 2406 54.10 42 39.33 Changed Integrase core domain
rve_3 PF13683 Domain 121 4386 62.80 30 37.29 Changed Integrase core domain
RVP PF00077 Domain 50 124336 94.30 86 28.21 Changed Retroviral aspartyl protease
RVP_2 PF08284 Domain 7 1125 115.90 36 9.78 Changed Retroviral aspartyl protease
RVT_1 PF00078 Family 152 172360 171.90 64 42.06 Changed Reverse transcriptase (RNA-dependent DNA polymerase)
RVT_2 PF07727 Family 99 7027 136.70 27 23.93 Changed Reverse transcriptase (RNA-dependent DNA polymerase)
RVT_3 PF13456 Domain 89 3907 81.20 25 12.10 Changed Reverse transcriptase-like
RVT_connect PF06815 Domain 47 20194 90.20 85 13.88 Changed Reverse transcriptase connection domain
RVT_N PF13655 Domain 152 753 79.10 44 18.14 Changed N-terminal domain of reverse transcriptase
RVT_thumb PF06817 Domain 41 66982 64.00 90 13.78 Changed Reverse transcriptase thumb domain
RWD PF05773 Domain 119 1878 119.30 20 19.67 Changed RWD domain
RWP-RK PF02042 Family 23 430 51.00 45 9.02 Changed RWP-RK domain
RXT2_N PF08595 Family 17 118 136.40 32 32.14 Changed RXT2-like, N-terminal
Rxt3 PF08642 Family 13 171 109.70 34 14.56 Changed Histone deacetylation protein Rxt3
RYDR_ITPR PF01365 Family 18 1311 191.60 27 11.19 Changed RIH domain
RyR PF02026 Family 38 1192 92.00 37 8.15 Changed RyR domain
Rz1 PF06085 Family 7 97 40.80 57 61.59 Changed Lipoprotein Rz1 precursor
R_equi_Vir PF05526 Family 8 29 171.60 37 98.50 Changed Rhodococcus equi virulence-associated protein
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