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Browse Pfam proteomes

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Species name Kingdom Proteome size Coverage (%)
Sequence Residue
Abutilon mosaic virus (isolate West India) Viruses 7 100 88
Acanthamoeba polyphaga mimivirus Viruses 909 44 29
Acaryochloris marina (strain MBIC 11017) Eukaryota 8172 62 52
Accumulibacter phosphatis (strain UW-1) Eukaryota 4438 84 61
Acetobacter pasteurianus (strain NBRC 3283 / LMG 1513 / CCTM 1153) Eukaryota 2906 82 62
Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655) Eukaryota 3445 87 63
Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288) Eukaryota 2276 89 70
Acholeplasma laidlawii (strain PG-8A) Eukaryota 1380 80 59
Acholeplasma phage L2 Viruses 14 14 7
Achromobacter xylosoxidans (strain A8) Eukaryota 6798 87 66
Acidaminococcus fermentans (strain ATCC 25085 / DSM 20731 / VR4) Eukaryota 2016 88 66
Acidaminococcus intestini (strain RyC-MR95) Eukaryota 2386 79 65
Acidianus bottle-shaped virus (isolate Italy/Pozzuoli) Viruses 54 4 7
Acidianus filamentous virus 1 (isolate United States/Yellowstone) Viruses 40 23 16
Acidianus filamentous virus 2 (isolate Italy/Pozzuoli) Viruses 52 10 6
Acidianus hospitalis (strain W1) Archaea 2329 72 58
Acidianus two-tailed virus Viruses 72 24 14
Acidilobus saccharovorans (strain DSM 16705 / VKM B-2471 / 345-15) Archaea 1499 76 59
Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) Eukaryota 1935 84 63
Acidiphilium cryptum (strain JF-5) Eukaryota 3521 86 64
Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) Eukaryota 3856 86 64
Acidithiobacillus caldus (strain SM-1) Eukaryota 3062 76 61
Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) Eukaryota 3120 73 61
Acidithiobacillus ferrooxidans (strain ATCC 53993) Eukaryota 2747 82 64
Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) Eukaryota 3363 78 56
Acidobacterium sp. (strain MP5ACTX9) Eukaryota 4514 75 51
Acidothermus cellulolyticus (strain ATCC 43068 / 11B) Eukaryota 2157 87 63
Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) Eukaryota 4718 87 63
Acidovorax citrulli (strain AAC00-1) Eukaryota 4602 82 60
Acidovorax ebreus (strain TPSY) Eukaryota 3461 89 68
Acidovorax sp. (strain JS42) Eukaryota 4045 86 64
Aciduliprofundum boonei (strain DSM 19572 / T469) Archaea 1539 81 62
Acinetobacter baumannii (strain 1656-2) Eukaryota 3744 80 65
Acinetobacter baumannii (strain AB0057) Eukaryota 3732 80 65
Acinetobacter baumannii (strain AB307-0294) Eukaryota 3452 83 66
Acinetobacter baumannii (strain ACICU) Eukaryota 3745 81 64
Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) Eukaryota 3798 81 64
Acinetobacter baumannii (strain AYE) Eukaryota 3652 83 65
Acinetobacter baumannii (strain SDF) Eukaryota 2767 83 64
Acinetobacter baumannii (strain TCDC-AB0715) Eukaryota 3819 80 64
Acinetobacter calcoaceticus (strain PHEA-2) Eukaryota 3598 84 67
Acinetobacter sp. (strain ADP1) Eukaryota 3293 84 66
Acinetobacter sp. (strain JCM 1667 / KCTC 23045 / DR1) Eukaryota 3873 82 66
Acromyrmex echinatior Eukaryota 13962 60 35
Actinobacillus pleuropneumoniae serotype 3 (strain JL03) Eukaryota 2026 92 72
Actinobacillus pleuropneumoniae serotype 5b (strain L20) Eukaryota 2004 95 72
Actinobacillus pleuropneumoniae serotype 7 (strain AP76) Eukaryota 2113 92 70
Actinobacillus succinogenes (strain ATCC 55618 / 130Z) Eukaryota 2077 95 73
Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) Eukaryota 8240 73 52
Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971) Eukaryota 6912 78 55
Adeno-associated virus 2 (isolate Srivastava/1982) Viruses 5 100 77
Aedes aegypti Eukaryota 16046 77 42
Aedes albopictus densovirus (isolate Boublik/1994) Viruses 3 33 19
Aedes densonucleosis virus (strain GKV 002 002) Viruses 2 50 39
Aerococcus urinae (strain ACS-120-V-Col10a) Eukaryota 1684 88 68
Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) Eukaryota 4121 90 67
Aeromonas salmonicida (strain A449) Eukaryota 4327 85 66
Aeromonas veronii (strain B565) Eukaryota 4009 88 67
Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) Archaea 1698 74 57
African cassava mosaic virus (isolate Nigerian) Viruses 8 100 83
African cassava mosaic virus (isolate West Kenyan 844) Viruses 8 100 83
African swine fever virus (isolate Pig/Kenya/KEN-50/1950) Viruses 160 54 35
African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) Viruses 153 53 33
African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) Viruses 159 52 35
African swine fever virus (isolate Warthog/Namibia/Wart80/1980) Viruses 160 53 35
African swine fever virus (strain Badajoz 1971 Vero-adapted) Viruses 149 46 32
Aggregatibacter actinomycetemcomitans serotype C (strain D11S-1) Eukaryota 2125 84 70
Aggregatibacter aphrophilus (strain NJ8700) Eukaryota 2223 83 68
Agrobacterium radiobacter (strain K84 / ATCC BAA-868) Eukaryota 6675 88 66
Agrobacterium sp. (strain H13-3) Eukaryota 5329 86 66
Agrobacterium tumefaciens (strain C58 / ATCC 33970) Eukaryota 5344 86 66
Agrobacterium vitis (strain S4 / ATCC BAA-846) Eukaryota 5352 88 64
Aichi virus (strain Human/A846/88/1989) Viruses 1 100 86
Ailuropoda melanoleuca Eukaryota 21142 90 46
Ajellomyces capsulata (strain G186AR / H82 / ATCC MYA-2454 / RMSCC 2432) Eukaryota 9214 62 37
Ajellomyces capsulata (strain H143) Eukaryota 9545 58 36
Ajellomyces capsulata (strain H88) Eukaryota 9445 60 36
Ajellomyces capsulata (strain NAm1 / WU24) Eukaryota 9252 63 36
Ajellomyces dermatitidis (strain ATCC 18188 / CBS 674.68) Eukaryota 10089 59 36
Ajellomyces dermatitidis (strain ER-3 / ATCC MYA-2586) Eukaryota 9539 61 36
Ajellomyces dermatitidis (strain SLH14081) Eukaryota 9587 61 36
Akkermansia muciniphila (strain ATCC BAA-835) Eukaryota 2137 77 55
AKV murine leukemia virus Viruses 3 100 66
Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) Eukaryota 2751 90 67
Alcelaphine herpesvirus 1 (strain C500) Viruses 70 87 62
Aleutian mink disease parvovirus (strain G) Viruses 4 50 76
Alfalfa mosaic virus (strain 425 / isolate Leiden) Viruses 4 100 64
Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) Eukaryota 4620 89 67
Alicycliphilus denitrificans (strain JCM 14587 / BC) Eukaryota 4484 87 67
Alicyclobacillus acidocaldarius (strain Tc-4-1) Eukaryota 3169 78 64
Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / 104-1A) Eukaryota 3058 80 63
Aliivibrio salmonicida (strain LFI1238) Eukaryota 3513 88 67
Alkalilimnicola ehrlichei (strain MLHE-1) Eukaryota 2862 89 65
Alkaliphilus metalliredigens (strain QYMF) Eukaryota 4467 80 62
Alkaliphilus oremlandii (strain OhILAs) Eukaryota 2828 86 64
Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) Eukaryota 3211 86 63
Allpahuayo virus (isolate Rat/Peru/CLHP-2472/1997) Viruses 4 100 98
Alteromonas macleodii (strain DSM 17117 / Deep ecotype) Eukaryota 3723 81 62
Alteromonas sp. (strain SN2) Eukaryota 4342 81 61
Aminobacterium colombiense (strain DSM 12261 / ALA-1) Eukaryota 1872 88 70
Ammonifex degensii (strain DSM 10501 / KC4) Eukaryota 2049 84 65
Amoebophilus asiaticus (strain 5a2) Eukaryota 1253 75 52
Amphimedon queenslandica Eukaryota 29739 62 35
Amsacta moorei entomopoxvirus Viruses 278 32 34
Amycolatopsis mediterranei (strain U-32) Eukaryota 9203 82 58
Amycolicicoccus subflavus (strain DSM 45089 / DQS3-9A1) Eukaryota 4703 79 61
Anabaena variabilis (strain ATCC 29413 / PCC 7937) Eukaryota 5634 76 56
Anaerocellum thermophilum (strain DSM 6725 / Z-1320) Eukaryota 2652 80 60
Anaerococcus prevotii (strain ATCC 9321 / DSM 20548 / JCM 6508 / PC1) Eukaryota 1795 85 64
Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) Eukaryota 3110 82 58
Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) Eukaryota 4460 79 56
Anaeromyxobacter dehalogenans (strain 2CP-C) Eukaryota 4345 80 55
Anaeromyxobacter sp. (strain Fw109-5) Eukaryota 4461 81 54
Anaeromyxobacter sp. (strain K) Eukaryota 4444 80 56
Anaplasma centrale (strain Israel) Eukaryota 919 81 55
Anaplasma marginale (strain Florida) Eukaryota 938 81 55
Anaplasma marginale (strain St. Maries) Eukaryota 944 81 55
Anaplasma phagocytophilum (strain HZ) Eukaryota 1330 59 55
Anolis carolinensis Eukaryota 18869 89 48
Anopheles darlingi Eukaryota 11437 65 33
Anopheles gambiae Eukaryota 13072 81 41
Anoxybacillus flavithermus (strain DSM 21510 / WK1) Eukaryota 2819 88 68
Apis mellifera Eukaryota 10955 82 41
Apple chlorotic leaf spot virus (isolate apple) Viruses 3 100 59
Apple chlorotic leaf spot virus (isolate plum P863) Viruses 3 100 59
Apple stem grooving virus (strain P-209) Viruses 2 100 56
Apple stem pitting virus (isolate PA66) Viruses 5 100 59
Aquareovirus C (isolate Golden shiner/USA/GSRV/1977) Viruses 12 50 62
Aquareovirus G (isolate American grass carp/USA/PB01-155/-) Viruses 12 50 62
Aquifex aeolicus (strain VF5) Eukaryota 1552 89 68
Arabidopsis lyrata subsp. lyrata n/a 32113 73 45
Arabidopsis thaliana Eukaryota 31949 80 46
Arabis mosaic virus (isolate NW) Viruses 2 100 38
Aravan virus Viruses 5 100 94
Arcanobacterium haemolyticum (strain ATCC 9345 / DSM 20595 / NBRC 15585 / NCTC 8452 / 11018) Eukaryota 1717 83 61
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) Archaea 2398 81 64
Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) Archaea 1818 72 61
Archaeoglobus veneficus (strain DSM 11195 / SNP6) Archaea 2065 79 63
Arcobacter butzleri (strain RM4018) Eukaryota 2253 83 61
Arcobacter nitrofigilis (strain ATCC 33309 / DSM 7299 / LMG 7604 / NCTC 12251 / CI) Eukaryota 3125 83 63
Aromatoleum aromaticum (strain EbN1) Eukaryota 4482 77 60
Arthrobacter arilaitensis (strain DSM 16368 / CIP 108037 / JCM 13566 / Re117) Eukaryota 3380 81 62
Arthrobacter aurescens (strain TC1) Eukaryota 4565 83 60
Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) Eukaryota 4587 78 58
Arthrobacter phenanthrenivorans (strain DSM 18606 / JCM 16027 / LMG 23796 / Sphe3) Eukaryota 4081 83 61
Arthrobacter sp. (strain FB24) Eukaryota 4453 84 61
Arthrobotrys oligospora (strain ATCC 24927 / CBS 115.81 / DSM 1491) Eukaryota 11478 61 32
Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) Eukaryota 7978 70 39
Arthroderma gypseum (strain ATCC MYA-4604 / CBS 118893) Eukaryota 8907 69 40
Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) Eukaryota 8764 70 40
Arthromitus sp. (strain SFB-mouse-Japan) Eukaryota 1487 81 60
Artic squirrel hepatitis virus Viruses 7 100 96
Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) Eukaryota 4761 84 45
Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) Eukaryota 9120 77 44
Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) Eukaryota 13484 70 46
Aspergillus kawachii (strain NBRC 4308) Eukaryota 11491 75 44
Aspergillus niger (strain ATCC 1015 / CBS 113.46 / FGSC A1144 / LSHB Ac4 / NCTC 3858a / NRRL 328 / USDA 3528.7) Eukaryota 10948 77 46
Aspergillus niger (strain CBS 513.88 / FGSC A1513) Eukaryota 14074 62 41
Aspergillus oryzae (strain ATCC 42149 / RIB 40) Eukaryota 12055 73 46
Aspergillus terreus (strain NIH 2624 / FGSC A1156) Eukaryota 10402 77 44
Aster yellows witches'-broom phytoplasma (strain AYWB) Eukaryota 689 66 56
Asticcacaulis excentricus (strain ATCC 15261 / DSM 4724 / VKM B-1370 / CB 48) Eukaryota 3743 83 61
Ateline herpesvirus 3 Viruses 71 92 68
Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) Eukaryota 1353 86 64
Atta cephalotes Eukaryota 18073 55 35
Aura virus Viruses 2 100 67
Aureococcus anophagefferens Eukaryota 11501 74 34
Australian bat lyssavirus (isolate Bat/AUS/1996) Viruses 5 100 94
Australian bat lyssavirus (isolate Human/AUS/1998) Viruses 5 100 94
Autographa californica nuclear polyhedrosis virus Viruses 155 75 62
Avian encephalomyelitis virus (strain Calnek vaccine) Viruses 1 100 55
Avian encephalomyelitis virus (strain L2Z) Viruses 1 100 55
Avian encephalomyelitis virus (strain Van Reokel) Viruses 1 100 55
Avian hepatitis E virus (isolate Chicken/California/Meng) Viruses 3 67 78
Avian infectious bronchitis virus (strain Beaudette) Viruses 10 100 50
Avian infectious bronchitis virus (strain M41) Viruses 10 100 50
Avian infectious bursal disease virus (isolate Chicken/UK/UK661/1989) Viruses 3 100 96
Avian infectious bursal disease virus (strain Chicken/Cuba/Soroa/1998) Viruses 3 100 96
Avian leukosis virus RSA Viruses 4 75 58
Avian metapneumovirus (isolate Canada goose/Minnesota/15a/2001) Viruses 9 67 67
Avian nephritis virus 1 Viruses 3 67 24
Azoarcus sp. (strain BH72) Eukaryota 3980 89 65
Azobacteroides pseudotrichonymphae genomovar. CFP2 Eukaryota 847 86 69
Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) Eukaryota 4708 89 63
Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) Eukaryota 3432 87 64
Azospirillum lipoferum (strain 4B) Eukaryota 6060 80 60
Azospirillum sp. (strain B510) Eukaryota 6091 88 61
Azotobacter vinelandii (strain DJ / ATCC BAA-1303) Eukaryota 4990 82 67
Babesia bovis Eukaryota 3687 63 30
Baboon endogenous virus (strain M7) Viruses 3 100 62
Bacillus amyloliquefaciens (strain ATCC 23350 / DSM 7 / BCRC 11601 / NBRC 15535 / NRRL B-14393) Eukaryota 3901 87 69
Bacillus amyloliquefaciens (strain FZB42) Eukaryota 3693 89 71
Bacillus anthracis Eukaryota 6614 78 65
Bacillus anthracis (strain A0248) Eukaryota 5291 81 67
Bacillus anthracis (strain CDC 684 / NRRL 3495) Eukaryota 5895 79 66
Bacillus atrophaeus (strain 1942) Eukaryota 4186 83 69
Bacillus cellulosilyticus (strain ATCC 21833 / DSM 2522 / FERM P-1141 / JCM 9156 / N-4) Eukaryota 4253 80 63
Bacillus cereus (strain 03BB102) Eukaryota 5598 81 66
Bacillus cereus (strain AH187) Eukaryota 5747 80 65
Bacillus cereus (strain AH820) Eukaryota 5798 80 65
Bacillus cereus (strain ATCC 10987) Eukaryota 5821 78 65
Bacillus cereus (strain ATCC 14579 / DSM 31) Eukaryota 5240 84 67
Bacillus cereus (strain B4264) Eukaryota 5384 83 66
Bacillus cereus (strain G9842) Eukaryota 5844 79 64
Bacillus cereus (strain Q1) Eukaryota 5458 83 66
Bacillus cereus (strain ZK / E33L) Eukaryota 5638 84 66
Bacillus cereus subsp. cytotoxis (strain NVH 391-98) Eukaryota 3840 86 68
Bacillus cereus var. anthracis (strain CI) Eukaryota 5522 82 66
Bacillus clausii (strain KSM-K16) Eukaryota 4082 88 68
Bacillus coagulans (strain 2-6) Eukaryota 2940 82 70
Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) Eukaryota 4006 85 68
Bacillus licheniformis (strain DSM 13 / ATCC 14580) Eukaryota 4676 86 69
Bacillus megaterium (strain ATCC 12872 / QMB1551) Eukaryota 5606 81 68
Bacillus megaterium (strain DSM 319) Eukaryota 5100 84 70
Bacillus phage phi29 Viruses 27 44 46
Bacillus phage PZA Viruses 27 44 46
Bacillus phage SP01 Viruses 204 21 25
Bacillus pseudofirmus (strain OF4) Eukaryota 4310 78 65
Bacillus pumilus (strain SAFR-032) Eukaryota 3675 86 69
Bacillus selenitireducens (strain ATCC 700615 / DSM 15326 / MLS10) Eukaryota 3231 86 65
Bacillus subtilis (strain 168) Eukaryota 4188 86 69
Bacillus subtilis (strain BSn5) Eukaryota 4145 86 70
Bacillus subtilis subsp. spizizenii (strain ATCC 23059 / NRRL B-14472 / W23) Eukaryota 4053 86 70
Bacillus thuringiensis (strain Al Hakam) Eukaryota 4792 88 67
Bacillus thuringiensis (strain BMB171) Eukaryota 5324 82 67
Bacillus thuringiensis subsp. finitimus (strain YBT-020) Eukaryota 5739 80 65
Bacillus thuringiensis subsp. konkukian (strain 97-27) Eukaryota 5169 86 67
Bacillus tusciae (strain DSM 2912 / NBRC 15312 / T2) Eukaryota 3135 85 66
Bacillus weihenstephanensis (strain KBAB4) Eukaryota 5650 83 65
Bacteriovorax marinus (strain ATCC BAA-682 / DSM 15412 / SJ) Eukaryota 3229 69 49
Bacteroides fragilis (strain 638R) Eukaryota 4284 79 57
Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) Eukaryota 4234 77 57
Bacteroides fragilis (strain YCH46) Eukaryota 4596 74 56
Bacteroides helcogenes (strain ATCC 35417 / DSM 20613 / JCM 6297 / P 36-108) Eukaryota 3240 80 58
Bacteroides salanitronis (strain DSM 18170 / JCM 13567 / BL78) Eukaryota 3608 72 54
Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) Eukaryota 4782 80 56
Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) Eukaryota 3982 80 59
Banana bunchy top virus (isolate Autralia) Viruses 7 57 60
Banna virus (strain Indonesia/JKT-6423/1980) Viruses 12 42 22
Barley mild mosaic virus (strain Na1) Viruses 2 100 54
Barley stripe mosaic virus Viruses 7 100 62
Barley yellow dwarf virus (isolate PAV) Viruses 6 83 85
Barley yellow mosaic virus (isolate China/Yancheng/1998) Viruses 2 100 48
Barley yellow mosaic virus (isolate Germany) Viruses 2 100 51
Barley yellow mosaic virus (strain Japanese II-1) Viruses 2 100 46
Barmah forest virus Viruses 2 100 69
Bartonella bacilliformis (strain ATCC 35685 / KC583) Eukaryota 1253 82 67
Bartonella clarridgeiae (strain CIP 104772 / 73) Eukaryota 1305 83 65
Bartonella grahamii (strain as4aup) Eukaryota 1709 82 59
Bartonella henselae (strain ATCC 49882 / Houston 1) Eukaryota 1466 83 62
Bartonella quintana (strain Toulouse) Eukaryota 1139 90 67
Bartonella tribocorum (strain CIP 105476 / IBS 506) Eukaryota 1962 77 56
Bat coronavirus 133/2005 Viruses 10 70 44
Bat coronavirus 279/2005 Viruses 12 100 52
Bat coronavirus HKU3 Viruses 12 100 52
Bat coronavirus HKU4 Viruses 10 70 44
Bat coronavirus HKU5 Viruses 10 60 42
Bat coronavirus HKU9 Viruses 9 67 45
Bat coronavirus Rp3/2004 Viruses 13 92 51
Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211) Eukaryota 8606 66 36
Baumannia cicadellinicola subsp. Homalodisca coagulata Eukaryota 595 99 77
Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) Eukaryota 3583 69 48
Bdellovibrio phage phiMH2K Viruses 11 18 37
Beak and feather disease virus Viruses 7 43 47
Bean common mosaic necrosis virus (strain NL-3) Viruses 2 50 83
Bean golden yellow mosaic virus (isolate Puerto Rico) Viruses 7 100 86
Bean golden yellow mosaic virus (isolate Puerto Rico-Japan) Viruses 8 88 76
Bean yellow dwarf virus Viruses 4 100 79
Bean-pod mottle virus (strain Kentucky G7) Viruses 2 100 51
Bear canyon virus (isolate Mouse/United States/AV A0070039/2000) Viruses 4 100 98
Beet curly top virus (strain California/Logan) Viruses 7 100 83
Beet mosaic virus Viruses 2 50 81
Beet necrotic yellow vein virus (isolate Japan/S) Viruses 9 100 47
Beet ringspot virus Viruses 3 67 26
Beet yellows virus (isolate Ukraine) Viruses 8 88 56
Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) Eukaryota 3774 82 62
Berne virus Viruses 7 71 16
Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) Eukaryota 4195 86 58
Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) Eukaryota 1628 84 60
Bifidobacterium animalis subsp. lactis (strain AD011) Eukaryota 1525 85 61
Bifidobacterium animalis subsp. lactis (strain BB-12) Eukaryota 1640 78 57
Bifidobacterium animalis subsp. lactis (strain Bl-04 / DGCC2908 / RB 4825 / SD5219) Eukaryota 1566 84 61
Bifidobacterium animalis subsp. lactis (strain DSM 10140 / JCM 10602 / LMG 18314) Eukaryota 1565 84 61
Bifidobacterium animalis subsp. lactis (strain V9) Eukaryota 1569 84 61
Bifidobacterium bifidum (strain PRL2010) Eukaryota 1707 84 58
Bifidobacterium bifidum (strain S17) Eukaryota 1782 80 58
Bifidobacterium breve (strain ACS-071-V-Sch8b) Eukaryota 1821 85 62
Bifidobacterium breve (strain NCIMB 8807 / UCC2003) Eukaryota 1826 87 61
Bifidobacterium dentium (strain ATCC 27534 / DSM 20436 / JCM 1195 / Bd1) Eukaryota 2121 82 59
Bifidobacterium longum (strain DJO10A) Eukaryota 1980 81 59
Bifidobacterium longum (strain NCC 2705) Eukaryota 1724 85 60
Bifidobacterium longum subsp. infantis (strain 157F) Eukaryota 1974 79 59
Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) Eukaryota 3196 71 54
Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 / JCM 1217 / NCTC 11818 / E194b) Eukaryota 1907 81 59
Bifidobacterium longum subsp. longum (strain BBMN68) Eukaryota 1795 84 61
Bifidobacterium longum subsp. longum (strain JDM301) Eukaryota 1944 85 60
BK polyomavirus Viruses 7 100 86
BK polyomavirus (strain AS) Viruses 5 100 85
Blackberry virus Y (isolate Blackberry plant/USA: Arkansas/C3ARK/2005) Viruses 1 100 73
Blackcurrant reversion association virus Viruses 2 100 27
Blastococcus saxobsidens (strain DD2) Eukaryota 4791 77 58
Blastocystis hominis Eukaryota 5820 69 42
Blattabacterium sp. subsp. Blattella germanica (strain Bge) Eukaryota 586 96 75
Blattabacterium sp. subsp. Periplaneta americana (strain BPLAN) Eukaryota 581 96 74
Blochmannia floridanus Eukaryota 583 99 77
Blochmannia pennsylvanicus (strain BPEN) Eukaryota 610 99 78
Blochmannia vafer (strain BVAF) Eukaryota 587 99 78
Blotched snakehead virus Viruses 3 67 82
Bluetongue virus 10 (isolate USA) Viruses 11 100 99
Bombyx mori Eukaryota 14768 66 39
Bombyx mori densovirus Viruses 3 33 32
Bombyx mori densovirus 3 (isolate China/VD1/VD2) Viruses 7 29 21
Bombyx mori densovirus 5 (isolate Shinshu) Viruses 4 50 25
Bordetella avium (strain 197N) Eukaryota 3372 88 67
Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) Eukaryota 4961 90 69
Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) Eukaryota 4161 93 70
Bordetella pertussis (strain CS) Eukaryota 3274 93 70
Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) Eukaryota 3261 93 70
Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) Eukaryota 4912 90 68
Bordetella phage BPP-1 Viruses 49 37 27
Borna disease virus Viruses 5 80 77
Borna disease virus (strain V) Viruses 5 80 77
Borrelia afzelii (strain PKo) Eukaryota 1694 71 58
Borrelia bissettii (strain DN127) Eukaryota 1403 75 60
Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680) Eukaryota 1290 77 60
Borrelia burgdorferi (strain JD1) Eukaryota 1358 77 58
Borrelia burgdorferi (strain N40) Eukaryota 1233 77 59
Borrelia burgdorferi (strain ZS7) Eukaryota 1222 76 60
Borrelia duttonii (strain Ly) Eukaryota 1287 75 54
Borrelia garinii (strain PBi) Eukaryota 1262 72 58
Borrelia hermsii (strain DAH) Eukaryota 819 83 59
Borrelia recurrentis (strain A1) Eukaryota 977 76 55
Borrelia turicatae (strain 91E135) Eukaryota 818 82 59
Bos taurus Eukaryota 26653 92 47
Botryotinia fuckeliana (strain B05.10) Eukaryota 16365 45 34
Botryotinia fuckeliana (strain T4) Eukaryota 16345 47 35
Botrytis virus F (isolate Botrytis cinerea/New Zealand/Howitt/2001) Viruses 2 100 43
Botrytis virus X (isolate Botrytis cinerea/New Zealand/Howitt/2006) Viruses 5 40 43
Bovine coronavirus (strain 98TXSF-110-ENT) Viruses 12 100 55
Bovine coronavirus (strain 98TXSF-110-LUN) Viruses 12 100 55
Bovine coronavirus (strain Mebus) Viruses 12 100 55
Bovine coronavirus (strain Quebec) Viruses 12 100 55
Bovine enteric calicivirus NB (isolate Bovine/United States/Nebraska/1980) Viruses 2 50 39
Bovine enteric calicivirus Newbury agent-1 (isolate Bovine/UK/Newbury1/1976) Viruses 2 50 39
Bovine enterovirus (strain VG-5-27) Viruses 1 100 75
Bovine ephemeral fever virus (strain BB7721) Viruses 12 42 65
Bovine papillomavirus type 1 Viruses 8 88 85
Bovine papillomavirus type 2 Viruses 10 70 79
Bovine papillomavirus type 3 Viruses 8 63 78
Bovine papillomavirus type 4 Viruses 11 55 73
Bovine papillomavirus type 5 Viruses 6 100 89
Bovine parvovirus (isolate pAT153/1986) Viruses 3 100 57
Bovine polyomavirus Viruses 5 80 75
Bovine respiratory syncytial virus (strain A51908) Viruses 11 100 81
Bovine viral diarrhea virus (isolate NADL) Viruses 1 100 33
Bovine viral diarrhea virus (strain CP7) Viruses 1 100 30
Bovine viral diarrhea virus (strain SD-1) Viruses 1 100 31
Brachybacterium faecium (strain ATCC 43885 / DSM 4810 / NCIB 9860) Eukaryota 3062 86 60
Brachypodium distachyon Eukaryota 29944 80 44
Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) Eukaryota 2642 77 57
Brachyspira intermedia (strain ATCC 51140 / PWS/A) Eukaryota 2872 74 56
Brachyspira murdochii (strain ATCC 51284 / DSM 12563 / 56-150) Eukaryota 2751 76 56
Brachyspira pilosicoli (strain ATCC BAA-1826 / 95/1000) Eukaryota 2301 77 58
Bradyrhizobium japonicum (strain USDA 110) Eukaryota 8252 81 60
Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) Eukaryota 7567 82 63
Bradyrhizobium sp. (strain ORS278) Eukaryota 6700 81 61
Branchiostoma floridae Eukaryota 28544 76 43
Breda virus 1 Viruses 6 83 19
Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) Eukaryota 5887 81 63
Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) Eukaryota 3326 80 60
Broad bean mottle virus Viruses 4 100 88
Broad bean wilt virus 1 (strain Spinach/United States/ATCC PV-132/1963) Viruses 2 100 45
Brome mosaic virus Viruses 4 100 87
Brome streak virus (strain 11-Cal) Viruses 1 100 55
Brucella abortus (strain 2308) Eukaryota 3022 83 68
Brucella abortus (strain S19) Eukaryota 2993 87 68
Brucella abortus biovar 1 (strain 9-941) Eukaryota 3076 82 68
Brucella canis (strain ATCC 23365 / NCTC 10854) Eukaryota 3238 81 67
Brucella melitensis (strain M28) Eukaryota 3351 82 68
Brucella melitensis (strain M5-90) Eukaryota 3346 82 68
Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) Eukaryota 3176 87 68
Brucella melitensis biotype 2 (strain ATCC 23457) Eukaryota 3125 82 68
Brucella microti (strain CCM 4915) Eukaryota 3269 82 67
Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) Eukaryota 2819 87 68
Brucella suis (strain ATCC 23445 / NCTC 10510) Eukaryota 3214 81 67
Brucella suis biovar 1 (strain 1330) Eukaryota 3276 80 67
Brugia malayi Eukaryota 11337 63 38
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) Eukaryota 555 99 79
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) Eukaryota 572 99 79
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain JF98) Eukaryota 476 91 78
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain JF99) Eukaryota 589 94 78
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain LL01) Eukaryota 577 93 79
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain TLW03) Eukaryota 573 93 79
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) Eukaryota 553 99 79
Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) Eukaryota 507 99 79
Buchnera aphidicola subsp. Cinara cedri (strain Cc) Eukaryota 362 98 78
Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) Eukaryota 562 99 79
Budgerigar fledgling disease virus Viruses 11 82 77
Bunyamwera virus Viruses 4 100 60
Bunyavirus La Crosse (isolate Human/United States/L78/1978) Viruses 4 100 60
Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) Eukaryota 6599 87 66
Burkholderia ambifaria (strain MC40-6) Eukaryota 6690 86 65
Burkholderia cenocepacia (strain AU 1054) Eukaryota 6449 88 67
Burkholderia cenocepacia (strain HI2424) Eukaryota 6897 87 66
Burkholderia cenocepacia (strain MC0-3) Eukaryota 6985 89 66
Burkholderia cepacia (strain J2315 / LMG 16656) Eukaryota 6993 87 66
Burkholderia gladioli (strain BSR3) Eukaryota 7350 87 63
Burkholderia glumae (strain BGR1) Eukaryota 5660 87 64
Burkholderia mallei (strain ATCC 23344) Eukaryota 4797 81 65
Burkholderia mallei (strain NCTC 10229) Eukaryota 4943 78 64
Burkholderia mallei (strain NCTC 10247) Eukaryota 5182 75 64
Burkholderia mallei (strain SAVP1) Eukaryota 4980 75 63
Burkholderia multivorans (strain ATCC 17616 / 249) Eukaryota 7210 85 65
Burkholderia phymatum (strain DSM 17167 / STM815) Eukaryota 7459 84 64
Burkholderia phytofirmans (strain DSM 17436 / PsJN) Eukaryota 7196 85 66
Burkholderia pseudomallei (strain 1106a) Eukaryota 7145 69 61
Burkholderia pseudomallei (strain 1710b) Eukaryota 6326 78 52
Burkholderia pseudomallei (strain 668) Eukaryota 7102 69 61
Burkholderia pseudomallei (strain K96243) Eukaryota 5717 88 65
Burkholderia rhizoxinica (strain DSM 19002 / CIP 109453 / HKI 454) Eukaryota 3858 66 57
Burkholderia sp. (strain 383) Eukaryota 7714 87 65
Burkholderia sp. (strain CCGE1002) Eukaryota 6866 83 65
Burkholderia sp. (strain CCGE1003) Eukaryota 5983 87 66
Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) Eukaryota 5561 87 64
Burkholderia vietnamiensis (strain G4 / LMG 22486) Eukaryota 7409 77 60
Burkholderia xenovorans (strain LB400) Eukaryota 8591 83 64
Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316) Eukaryota 3799 73 52
Cabbage leaf curl virus (isolate Jamaica) Viruses 7 100 86
Caenorhabditis brenneri Eukaryota 29982 59 35
Caenorhabditis briggsae Eukaryota 21703 59 37
Caenorhabditis elegans Eukaryota 24863 68 41
Caenorhabditis japonica Eukaryota 25433 55 38
Caenorhabditis remanei Eukaryota 31252 62 36
Caldicellulosiruptor hydrothermalis (strain DSM 18901 / VKM B-2411 / 108) Eukaryota 2521 85 63
Caldicellulosiruptor kristjanssonii (strain ATCC 700853 / DSM 12137 / I77R1B) Eukaryota 2463 82 61
Caldicellulosiruptor kronotskyensis (strain DSM 18902 / VKM B-2412 / 2002) Eukaryota 2461 85 62
Caldicellulosiruptor obsidiansis (strain ATCC BAA-2073 / strain OB47) Eukaryota 2184 86 63
Caldicellulosiruptor owensensis (strain ATCC 700167 / DSM 13100 / OL) Eukaryota 2133 86 64
Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) Eukaryota 2629 84 62
Calditerrivibrio nitroreducens (strain DSM 19672 / NBRC 101217 / Yu37-1) Eukaryota 2089 88 67
Caldivirga maquilingensis (strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167) Archaea 1962 77 59
Callithrix jacchus Eukaryota 42016 87 45
Campoletis sonorensis ichnovirus (strain Texas A&M) Viruses 5 100 71
Camponotus floridanus Eukaryota 14787 63 37
Campylobacter concisus (strain 13826) Eukaryota 2063 74 58
Campylobacter curvus (strain 525.92) Eukaryota 1928 79 63
Campylobacter fetus subsp. fetus (strain 82-40) Eukaryota 1715 84 64
Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) Eukaryota 1687 71 59
Campylobacter jejuni (strain RM1221) Eukaryota 1836 78 62
Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) Eukaryota 1712 79 63
Campylobacter jejuni subsp. jejuni (strain IA3902) Eukaryota 1665 84 65
Campylobacter jejuni subsp. jejuni (strain S3) Eukaryota 1783 81 64
Campylobacter jejuni subsp. jejuni serotype HS21 (strain M1 / 99/308) Eukaryota 1618 87 66
Campylobacter jejuni subsp. jejuni serotype HS:41 (strain ICDCCJ07001) Eukaryota 1531 87 65
Campylobacter jejuni subsp. jejuni serotype O:2 (strain NCTC 11168) Eukaryota 1623 86 65
Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) Eukaryota 1748 82 64
Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) Eukaryota 1622 86 66
Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) Eukaryota 1544 85 63
Canary circovirus Viruses 2 100 76
Candida albicans (strain SC5314 / ATCC MYA-2876) Eukaryota 9118 62 39
Candida albicans (strain WO-1) Eukaryota 5742 79 43
Candida dubliniensis (strain CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 / NRRL Y-17841) Eukaryota 5828 81 43
Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) Eukaryota 5197 84 44
Candida parapsilosis (strain CDC 317 / ATCC MYA-4646) Eukaryota 5777 82 44
Candida tenuis (strain ATCC 10573 / BCRC 21748 / CBS 615 / JCM 9827 / NBRC 10315 / NRRL Y-1498 / VKM Y-70) Eukaryota 6051 81 49
Candida tropicalis (strain ATCC MYA-3404 / T1) Eukaryota 6226 78 43
Canine distemper virus (strain Onderstepoort) Viruses 7 100 85
Canine oral papillomavirus (strain Y62) Viruses 7 86 87
Canine parvovirus type 2 (isolate Dog/United States/CPV-N/1978) Viruses 2 100 78
Canis familiaris n/a 25855 90 47
Capnocytophaga canimorsus (strain 5) Eukaryota 2394 71 55
Capnocytophaga ochracea (strain ATCC 27872 / DSM 7271 / JCM 12966 / VPI 2845) Eukaryota 2171 77 58
Capsaspora owczarzaki (strain ATCC 30864) Eukaryota 8374 80 35
Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) Eukaryota 2615 80 67
Carnation etched ring virus Viruses 6 83 39
Carnation mottle virus (isolate China/Shanghai) Viruses 4 75 66
Carnation ringspot virus (isolate Lommel) Viruses 4 75 58
Carnobacterium sp. (strain 17-4) Eukaryota 2474 89 70
Carsonella ruddii (strain PV) Eukaryota 182 79 67
Cassava vein mosaic virus Viruses 5 40 23
Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) Eukaryota 8909 78 53
Cauliflower mosaic virus (strain BBC) Viruses 6 83 39
Cauliflower mosaic virus (strain CM-1841) Viruses 6 100 39
Cauliflower mosaic virus (strain D/H) Viruses 8 75 36
Cauliflower mosaic virus (strain NY8153) Viruses 6 100 40
Cauliflower mosaic virus (strain Strasbourg) Viruses 6 100 39
Caulobacter crescentus (strain ATCC 19089 / CB15) Eukaryota 3720 83 61
Caulobacter crescentus (strain NA1000 / CB15N) Eukaryota 3852 83 62
Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) Eukaryota 4136 86 63
Caulobacter sp. (strain K31) Eukaryota 5372 83 61
Cavia porcellus Eukaryota 19908 91 47
Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) Eukaryota 3760 84 58
Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134) Eukaryota 3673 80 55
Cellulophaga algicola (strain DSM 14237 / IC166 / ACAM 630) Eukaryota 4114 75 54
Cellulophaga lytica (strain ATCC 23178 / DSM 7489 / JCM 8516 / NBRC 14961 / NCIMB 1423 / VKM B-1433 / Cy l20) Eukaryota 3281 79 56
Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) Eukaryota 4150 78 58
Cellvibrio gilvus (strain ATCC 13127 / NRRL B-14078) Eukaryota 3153 82 57
Cellvibrio japonicus (strain Ueda107) Eukaryota 3711 82 57
Cenarchaeum symbiosum (strain A) Archaea 2022 54 38
Cestrum yellow leaf curling virus Viruses 7 57 26
Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) Eukaryota 11041 63 34
Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) Eukaryota 7164 75 38
Chandipura virus (strain I653514) Viruses 7 71 92
Chapare virus (isolate Human/Bolivia/810419/2003) Viruses 4 100 97
Cherry rasp leaf virus (isolate Potato/United States) Viruses 2 50 21
Chicken anemia virus (isolate Australia/CAU269-7/2000) Viruses 3 100 91
Chicken anemia virus (isolate Germany Cuxhaven-1) Viruses 3 100 91
Chicken anemia virus (isolate Japan 82-2) Viruses 3 100 91
Chicken anemia virus (isolate USA 26p4) Viruses 4 75 78
Chicken anemia virus (isolate USA CIA-1) Viruses 3 100 91
Chikungunya virus (strain 37997) Viruses 2 100 68
Chikungunya virus (strain S27-African prototype) Viruses 2 100 68
Chimpanzee hepatitis B virus (isolate United Kingdom/LSH/1988) Viruses 7 100 97
Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) Eukaryota 7179 76 53
Chlamydia muridarum (strain MoPn / Nigg) Eukaryota 914 78 59
Chlamydia phage 1 Viruses 8 25 42
Chlamydia pneumoniae Eukaryota 1569 65 52
Chlamydia trachomatis (strain D/UW-3/Cx) Eukaryota 895 78 59
Chlamydia trachomatis (strain L2c) Eukaryota 954 73 58
Chlamydia trachomatis serovar A (strain A2497) Eukaryota 1246 72 58
Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B) Eukaryota 917 78 59
Chlamydia trachomatis serovar B (strain Jali20/OT) Eukaryota 883 80 59
Chlamydia trachomatis serovar B (strain TZ1A828/OT) Eukaryota 888 79 59
Chlamydia trachomatis serovar D (strain D-EC) Eukaryota 878 79 59
Chlamydia trachomatis serovar D (strain D-LC) Eukaryota 878 79 59
Chlamydia trachomatis serovar E (strain E/11023) Eukaryota 926 75 59
Chlamydia trachomatis serovar E (strain E/150) Eukaryota 927 75 59
Chlamydia trachomatis serovar E (strain Sweden2) Eukaryota 882 79 59
Chlamydia trachomatis serovar G (strain G/11074) Eukaryota 919 76 59
Chlamydia trachomatis serovar G (strain G/11222) Eukaryota 927 75 59
Chlamydia trachomatis serovar G (strain G/9301) Eukaryota 921 76 59
Chlamydia trachomatis serovar G (strain G/9768) Eukaryota 920 76 59
Chlamydia trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B) Eukaryota 884 80 59
Chlamydia trachomatis serovar L2b (strain UCH-1/proctitis) Eukaryota 883 80 59
Chlamydomonas reinhardtii Eukaryota 14337 58 27
Chlamydophila abortus (strain S26/3) Eukaryota 932 79 58
Chlamydophila caviae (strain GPIC) Eukaryota 1005 76 57
Chlamydophila felis (strain Fe/C-56) Eukaryota 1013 76 57
Chlamydophila pecorum (strain ATCC VR-628 / E58) Eukaryota 988 74 58
Chlamydophila pneumoniae (strain LPCoLN) Eukaryota 1105 71 56
Chlamydophila psittaci (strain ATCC VR-125 / 6BC) Eukaryota 1217 74 56
Chlamydophila psittaci (strain RD1) Eukaryota 951 79 58
Chloracidobacterium thermophilum (strain B) Eukaryota 3053 79 55
Chlorella variabilis Eukaryota 9830 76 37
Chlorobaculum parvum (strain NCIB 8327) Eukaryota 2044 87 67
Chlorobium chlorochromatii (strain CaD3) Eukaryota 1986 85 56
Chlorobium limicola (strain DSM 245 / NBRC 103803) Eukaryota 2419 83 63
Chlorobium phaeobacteroides (strain BS1) Eukaryota 2434 83 64
Chlorobium phaeobacteroides (strain DSM 266) Eukaryota 2579 81 60
Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) Eukaryota 2250 76 66
Chloroflexus aggregans (strain MD-66 / DSM 9485) Eukaryota 3725 82 57
Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) Eukaryota 4153 78 57
Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) Eukaryota 3850 84 58
Chloroherpeton thalassium (strain ATCC 35110 / GB-78) Eukaryota 2708 83 59
Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) Eukaryota 4397 83 65
Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) Eukaryota 3298 91 70
Ciona intestinalis Eukaryota 17204 63 46
Ciona savignyi Eukaryota 20004 77 56
Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) Eukaryota 5014 80 70
Citrobacter rodentium (strain ICC168) Eukaryota 4792 88 69
Citrus leaf blotch virus (isolate Nagami kumquat/France/SRA-153/1984) Viruses 3 100 54
Citrus leprosis virus C (isolate Citrus sinesis/Brazil/Cordeiropolis/2003) Viruses 6 33 35
Citrus psorosis virus (isolate Spain/P-121) Viruses 4 50 9
Classical swine fever virus (strain Alfort) Viruses 1 100 31
Classical swine fever virus (strain Brescia) Viruses 1 100 31
Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) Eukaryota 3078 82 59
Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) n/a 3058 78 58
Clavispora lusitaniae (strain ATCC 42720) Eukaryota 5932 76 42
Cloacamonas acidaminovorans (strain Evry) Eukaryota 1812 76 52
Clonorchis sinensis Eukaryota 13605 57 25
Clostridiales genomosp. BVAB3 (strain UPII9-5) Eukaryota 1566 78 57
Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) Eukaryota 3847 82 63
Clostridium acetobutylicum (strain EA 2018) Eukaryota 3912 81 63
Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) Eukaryota 5003 86 64
Clostridium botulinum (strain 230613 / Type F) Eukaryota 3524 81 65
Clostridium botulinum (strain 657 / Type Ba4) Eukaryota 3977 77 63
Clostridium botulinum (strain Alaska E43 / Type E3) Eukaryota 3254 82 64
Clostridium botulinum (strain ATCC 19397 / Type A) Eukaryota 3546 83 65
Clostridium botulinum (strain Eklund 17B / Type B) Eukaryota 3473 79 62
Clostridium botulinum (strain H04402 065 / Type A5) Eukaryota 3688 82 65
Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) Eukaryota 4237 80 65
Clostridium botulinum (strain Kyoto / Type A2) Eukaryota 3858 80 64
Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) Eukaryota 3652 82 65
Clostridium botulinum (strain Loch Maree / Type A3) Eukaryota 3981 78 62
Clostridium botulinum (strain Okra / Type B1) Eukaryota 3844 80 64
Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) Eukaryota 3287 82 59
Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B) Eukaryota 4211 80 60
Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) Eukaryota 3774 79 57
Clostridium difficile (strain 630) Eukaryota 3784 85 66
Clostridium difficile (strain CD196) Eukaryota 3453 90 67
Clostridium difficile (strain R20291) Eukaryota 3505 89 67
Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) Eukaryota 3828 80 63
Clostridium kluyveri (strain NBRC 12016) Eukaryota 3496 85 64
Clostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC) Eukaryota 4149 85 64
Clostridium novyi (strain NT) Eukaryota 2303 85 66
Clostridium perfringens (strain 13 / Type A) Eukaryota 2721 84 66
Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) Eukaryota 2873 82 65
Clostridium perfringens (strain SM101 / Type A) Eukaryota 2558 84 66
Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) Eukaryota 3891 84 59
Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) Eukaryota 4133 84 61
Clostridium sp. (strain SY8519) Eukaryota 2601 82 62
Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) Eukaryota 2572 86 65
Clostridium tetani (strain Massachusetts / E88) Eukaryota 2414 86 64
Clostridium thermocellum (strain ATCC 27405 / DSM 1237) Eukaryota 3105 81 58
Clostridium thermocellum (strain DSM 1313 / LMG 6656 / LQ8) Eukaryota 2881 82 59
Coccidioides posadasii (strain C735) Eukaryota 7226 80 41
Coccidioides posadasii (strain RMSCC 757 / Silveira) Eukaryota 10212 58 38
Cocksfoot mottle virus (isolate Dactylis glomerata/Norway/CfMV-NO/1995) Viruses 4 75 46
Colletotrichum graminicola (strain M1.001 / M2 / FGSC 10212) Eukaryota 12019 69 41
Colletotrichum higginsianum (strain IMI 349063) Eukaryota 16110 61 41
Collimonas fungivorans (strain Ter331) Eukaryota 4429 88 64
Colwellia psychrerythraea (strain 34H / ATCC BAA-681) Eukaryota 4872 77 62
Comamonas testosteroni (strain CNB-2) Eukaryota 4781 86 66
Commelina yellow mottle virus Viruses 3 67 26
Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) Eukaryota 5912 83 58
Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) Eukaryota 13335 54 29
Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) Eukaryota 1481 83 67
Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865) Eukaryota 3110 75 52
Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) Eukaryota 8019 72 48
Cordyceps militaris (strain CM01) Eukaryota 9651 73 40
Coriobacterium glomerans (strain ATCC 49209 / DSM 20642 / JCM 10262 / PW2) Eukaryota 1768 87 64
Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) Eukaryota 2508 81 60
Corynebacterium diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype gravis) Eukaryota 2264 79 61
Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395) Eukaryota 2939 79 58
Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) Eukaryota 3929 75 58
Corynebacterium glutamicum (strain R) Eukaryota 3077 80 62
Corynebacterium jeikeium (strain K411) Eukaryota 2064 85 61
Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) Eukaryota 2018 82 60
Corynebacterium pseudotuberculosis (strain 1002) Eukaryota 2090 80 62
Corynebacterium pseudotuberculosis (strain C231) Eukaryota 2089 80 62
Corynebacterium pseudotuberculosis (strain FRC41) Eukaryota 2109 82 62
Corynebacterium pseudotuberculosis (strain I19) Eukaryota 2093 79 62
Corynebacterium resistens (strain DSM 45100 / JCM 12819 / GTC 2026) Eukaryota 2142 83 59
Corynebacterium ulcerans (strain BR-AD22) Eukaryota 2333 79 60
Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) Eukaryota 2009 83 61
Corynebacterium variabile (strain DSM 44702 / JCM 12073 / NCIMB 30131) Eukaryota 2972 81 61
Cottontail rabbit papillomavirus (strain Kansas) Viruses 8 75 76
Cowpea chlorotic mottle virus Viruses 4 100 89
Cowpea mosaic virus (strain SB) Viruses 5 80 48
Cowpea severe mosaic virus (strain DG) Viruses 2 100 42
Coxiella burnetii (strain CbuG_Q212) Eukaryota 1830 72 63
Coxiella burnetii (strain CbuK_Q154) Eukaryota 1914 71 62
Coxiella burnetii (strain Dugway 5J108-111) Eukaryota 2029 71 60
Coxiella burnetii (strain RSA 331 / Henzerling II) Eukaryota 1888 69 62
Coxiella burnetii (strain RSA 493 / Nine Mile phase I) Eukaryota 1814 73 63
Coxsackievirus A16 (strain G-10) Viruses 1 100 74
Coxsackievirus A16 (strain Tainan/5079/98) Viruses 1 100 74
Coxsackievirus A21 (strain Coe) Viruses 1 100 74
Coxsackievirus A24 (strain EH24/70) Viruses 1 100 74
Coxsackievirus A9 (strain Griggs) Viruses 1 100 75
Coxsackievirus B1 (strain Japan) Viruses 1 100 75
Coxsackievirus B2 (strain Ohio-1) Viruses 1 100 75
Coxsackievirus B3 (strain Nancy) Viruses 1 100 75
Coxsackievirus B3 (strain Woodruff) Viruses 1 100 75
Coxsackievirus B4 (strain E2) Viruses 1 100 75
Coxsackievirus B4 (strain JVB / Benschoten / New York/51) Viruses 1 100 75
Coxsackievirus B5 (strain Peterborough / 1954/UK/85) Viruses 1 100 75
Coxsackievirus B6 (strain Schmitt) Viruses 1 100 75
Cricetulus griseus Eukaryota 15735 70 44
Cricket paralysis virus (isolate Teleogryllus commodus/Australia/CrPVVIC/1968) Viruses 2 100 53
Crimean-Congo hemorrhagic fever virus (strain Nigeria/IbAr10200/1970) Viruses 3 100 32
Croceibacter atlanticus (strain ATCC BAA-628 / HTCC2559 / KCTC 12090) Eukaryota 2702 79 56
Cronobacter sakazakii (strain ATCC BAA-894) Eukaryota 4419 84 68
Cronobacter turicensis (strain DSM 18703 / LMG 23827 / z3032) Eukaryota 4451 86 70
Cryphonectria hypovirus 1 (strain EP713) Viruses 2 100 22
Cryphonectria hypovirus 1 (strain Euro7) Viruses 2 100 22
Cryphonectria parasitica mitovirus 1 (strain American chestnut tree/New Jersey/NB631) Viruses 1 100 62
Cryptobacterium curtum (strain ATCC 700683 / DSM 15641 / 12-3) Eukaryota 1355 88 63
Cryptococcus gattii serotype B (strain WM276 / ATCC MYA-4071) Eukaryota 6560 75 38
Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) Eukaryota 6569 78 38
Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) Eukaryota 6436 78 39
Cryptosporidium hominis Eukaryota 3886 52 27
Cryptosporidium muris (strain RN66) Eukaryota 3930 62 27
Cryptosporidium parvum (strain Iowa II) Eukaryota 3805 60 25
Cryptosporidium parvum virus 1 (strain KSU-1) Viruses 2 50 20
Cucumber green mottle mosaic virus (strain watermelon SH) Viruses 3 100 69
Cucumber mosaic virus (strain FNY) Viruses 5 100 77
Cucumber mosaic virus (strain Q) Viruses 6 100 78
Cucumber necrosis virus Viruses 5 100 73
Culex nigripalpus nucleopolyhedrovirus (isolate Florida/1997) Viruses 109 28 28
Culex quinquefasciatus Eukaryota 18702 70 38
Cupixi virus (isolate Rat/Brasil/BeAn 119303/1970) Viruses 4 100 98
Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) Eukaryota 6614 87 66
Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) Eukaryota 7773 85 66
Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) Eukaryota 6433 88 67
Cupriavidus taiwanensis (strain R1 / LMG 19424) Eukaryota 5838 85 65
cyanobacterium UCYN-A Eukaryota 1199 88 67
Cyanothece sp. (strain ATCC 51142) Eukaryota 5239 71 57
Cyanothece sp. (strain PCC 7424) Eukaryota 5656 72 56
Cyanothece sp. (strain PCC 7425 / ATCC 29141) Eukaryota 5232 75 58
Cyanothece sp. (strain PCC 7822) Eukaryota 6559 69 52
Cyanothece sp. (strain PCC 8801) Eukaryota 4335 78 59
Cyanothece sp. (strain PCC 8802) Eukaryota 4405 77 59
Cycas necrotic stunt virus Viruses 2 100 29
Cyclobacterium marinum (strain ATCC 25205 / DSM 745) Eukaryota 4983 76 55
Cydia pomonella granulosis virus (isolate Mexico/1963) Viruses 143 55 51
Cymbidium ringspot virus Viruses 4 100 76
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) Eukaryota 3771 72 49
Danaus plexippus Eukaryota 16253 64 38
Danio rerio Eukaryota 40521 88 47
Daphnia pulex Eukaryota 30135 48 33
Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) Eukaryota 6242 79 45
Dechloromonas aromatica (strain RCB) Eukaryota 4155 86 63
Deer papillomavirus Viruses 8 75 83
Deerpox virus (strain Mule deer/United States/W-848-83/1983) Viruses 165 91 77
Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) Eukaryota 2338 84 63
Dehalococcoides ethenogenes (strain 195) Eukaryota 1501 79 66
Dehalococcoides sp. (strain BAV1) Eukaryota 1354 84 66
Dehalococcoides sp. (strain CBDB1) Eukaryota 1454 83 68
Dehalococcoides sp. (strain GT) Eukaryota 1378 83 66
Dehalococcoides sp. (strain VS) Eukaryota 1426 84 67
Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) Eukaryota 1619 81 64
Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) Eukaryota 3452 81 61
Deinococcus geothermalis (strain DSM 11300) Eukaryota 2813 85 63
Deinococcus gobiensis (strain DSM 21396 / JCM 16679 / CGMCC 1.7299 / I-0) Eukaryota 4323 70 55
Deinococcus maricopensis (strain DSM 21211 / LMG 22137 / NRRL B-23946 / LB-34) Eukaryota 3262 80 60
Deinococcus proteolyticus (strain ATCC 35074 / DSM 20540 / JCM 6276 / NBRC 101906 / NCIMB 13154 / VKM Ac-1939 / CCM 2703) Eukaryota 2652 77 58
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) Eukaryota 3084 77 57
Delftia acidovorans (strain DSM 14801 / SPH-1) Eukaryota 5967 85 63
Delftia sp. (strain Cs1-4) Eukaryota 5855 86 63
Dengue virus type 1 (strain Brazil/97-11/1997) Viruses 1 100 87
Dengue virus type 1 (strain Nauru/West Pac/1974) Viruses 1 100 87
Dengue virus type 1 (strain Singapore/S275/1990) Viruses 1 100 87
Dengue virus type 2 (isolate Thailand/0168/1979) Viruses 1 100 87
Dengue virus type 2 (strain 16681-PDK53) Viruses 1 100 87
Dengue virus type 2 (strain Jamaica/1409/1983) Viruses 1 100 88
Dengue virus type 2 (strain Peru/IQT2913/1996) Viruses 1 100 88
Dengue virus type 2 (strain Puerto Rico/PR159-S1/1969) Viruses 1 100 88
Dengue virus type 2 (strain Thailand/16681/1984) Viruses 1 100 87
Dengue virus type 2 (strain Thailand/NGS-C/1944) Viruses 1 100 87
Dengue virus type 3 (strain China/80-2/1980) Viruses 1 100 88
Dengue virus type 3 (strain Martinique/1243/1999) Viruses 1 100 88
Dengue virus type 3 (strain Philippines/H87/1956) Viruses 1 100 88
Dengue virus type 3 (strain Singapore/8120/1995) Viruses 1 100 88
Dengue virus type 3 (strain Sri Lanka/1266/2000) Viruses 1 100 88
Dengue virus type 4 (strain Dominica/814669/1981) Viruses 1 100 85
Dengue virus type 4 (strain Philippines/H241/1956) Viruses 1 100 85
Dengue virus type 4 (strain Singapore/8976/1995) Viruses 1 100 85
Dengue virus type 4 (strain Thailand/0348/1991) Viruses 1 100 85
Dengue virus type 4 (strain Thailand/0476/1997) Viruses 1 100 85
Denitrovibrio acetiphilus (strain DSM 12809 / N2460) Eukaryota 2901 84 62
Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) Eukaryota 3268 84 61
Desulfatibacillum alkenivorans (strain AK-01) Eukaryota 5198 80 56
Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) Eukaryota 4852 84 64
Desulfitobacterium hafniense (strain Y51) Eukaryota 5014 85 62
Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) Eukaryota 2859 80 60
Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) Eukaryota 4781 82 60
Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) Eukaryota 3259 83 61
Desulfococcus oleovorans (strain DSM 6200 / Hxd3) Eukaryota 3255 83 57
Desulfohalobium retbaense (strain DSM 5692) Eukaryota 2455 85 64
Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) Eukaryota 3421 85 62
Desulforudis audaxviator (strain MP104C) Eukaryota 2136 86 65
Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628) Eukaryota 5217 84 65
Desulfotalea psychrophila (strain LSv54 / DSM 12343) Eukaryota 3233 79 60
Desulfotomaculum acetoxidans (strain ATCC 49208 / DSM 771 / VKM B-1644) Eukaryota 4016 77 57
Desulfotomaculum carboxydivorans (strain DSM 14880 / VKM B-2319 / CO-1-SRB) Eukaryota 2620 85 67
Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) Eukaryota 3385 80 62
Desulfotomaculum reducens (strain MI-1) Eukaryota 3220 84 64
Desulfotomaculum ruminis (strain ATCC 23193 / DSM 2154 / NCIB 8452 / DL) Eukaryota 3763 81 63
Desulfovibrio aespoeensis (strain ATCC 700646 / DSM 10631 / Aspo-2) Eukaryota 3269 83 60
Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) Eukaryota 2345 83 60
Desulfovibrio desulfuricans (strain G20) Eukaryota 3220 84 62
Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) Eukaryota 4663 75 55
Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) Eukaryota 3807 83 61
Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) Eukaryota 3517 74 58
Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) Eukaryota 3178 84 59
Desulfovibrio vulgaris (strain RCH1) Eukaryota 3214 81 59
Desulfovibrio vulgaris subsp. vulgaris (strain DP4) Eukaryota 3085 84 60
Desulfurispirillum indicum (strain ATCC BAA-1389 / S5) Eukaryota 2551 85 63
Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) Eukaryota 2595 86 61
Desulfurobacterium thermolithotrophum (strain DSM 11699 / BSA) Eukaryota 1496 90 68
Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) Archaea 1470 71 58
Desulfurococcus mucosus (strain ATCC 35584 / DSM 2162 / JCM 9187 / O7/1) Archaea 1345 77 58
Diatraea saccharalis densovirus Viruses 6 67 55
Dichelobacter nodosus (strain VCS1703A) Eukaryota 1273 88 67
Dickeya dadantii (strain 3937) Eukaryota 4532 86 68
Dickeya dadantii (strain Ech586) Eukaryota 4141 91 70
Dickeya dadantii (strain Ech703) Eukaryota 3961 93 71
Dickeya zeae (strain Ech1591) Eukaryota 4131 91 69
Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) Eukaryota 1913 86 66
Dictyoglomus turgidum (strain Z-1310 / DSM 6724) Eukaryota 1743 89 67
Dictyostelium discoideum Eukaryota 12746 61 29
Dictyostelium purpureum Eukaryota 12347 63 34
Dinoroseobacter shibae (strain DFL 12) Eukaryota 4086 86 64
Drosophila ananassae Eukaryota 14968 71 38
Drosophila erecta Eukaryota 14881 70 38
Drosophila grimshawi Eukaryota 14754 72 38
Drosophila melanogaster Eukaryota 17536 78 38
Drosophila mojavensis Eukaryota 14525 70 38
Drosophila persimilis Eukaryota 16754 65 37
Drosophila pseudoobscura pseudoobscura n/a 16013 69 37
Drosophila sechellia Eukaryota 16138 68 38
Drosophila simulans Eukaryota 15359 66 38
Drosophila virilis Eukaryota 14456 72 38
Drosophila willistoni Eukaryota 15447 69 38
Drosophila x virus (isolate Chung/1996) Viruses 3 67 80
Drosophila yakuba Eukaryota 15954 68 38
Duck hepatitis A virus (strain Duck/Taiwan/03D/2003) Viruses 1 100 53
Duck hepatitis B virus (isolate brown Shanghai duck S5) Viruses 4 100 95
Duck hepatitis B virus (isolate Shanghai/DHBVQCA34) Viruses 4 100 95
Duck hepatitis B virus (isolate white Shanghai duck S31) Viruses 4 100 95
Duck hepatitis B virus (strain China) Viruses 4 100 95
Duck hepatitis B virus (strain Germany/DHBV-3) Viruses 4 100 95
Duck hepatitis B virus (strain United States/DHBV-16) Viruses 5 100 93
Dugbe virus (isolate ArD44313) Viruses 3 100 32
Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) Eukaryota 5703 78 55
Eastern equine encephalitis virus (strain Florida 91-469) Viruses 2 100 67
Eastern equine encephalitis virus (strain PE-0.0155) Viruses 2 100 68
Eastern equine encephalitis virus (strain PE-3.0815) Viruses 2 100 67
Echovirus 1 (strain Human/Egypt/Farouk/1951) Viruses 1 100 75
Echovirus 11 (strain Gregory) Viruses 1 100 74
Echovirus 12 (strain Travis) Viruses 1 100 75
Echovirus 30 (strain Bastianni) Viruses 1 100 74
Echovirus 5 (strain Noyce) Viruses 1 100 74
Echovirus 6 (strain Charles) Viruses 1 100 74
Echovirus 9 (strain Barty) Viruses 1 100 74
Echovirus 9 (strain Hill) Viruses 1 100 75
Ectocarpus siliculosus Eukaryota 16334 60 27
Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) Viruses 231 30 20
Edwardsiella ictaluri (strain 93-146) Eukaryota 3725 81 69
Edwardsiella tarda (strain EIB202) Eukaryota 3568 85 71
Edwardsiella tarda (strain FL6-60) Eukaryota 3251 91 72
Eggerthella lenta (strain ATCC 25559 / DSM 2243 / JCM 9979 / NCTC 11813 / VPI 0255) Eukaryota 3054 83 58
Eggerthella sp. (strain YY7918) Eukaryota 2674 82 59
Eggplant mosaic virus Viruses 3 100 59
Ehrlichia canis (strain Jake) Eukaryota 921 81 59
Ehrlichia chaffeensis (strain Arkansas) Eukaryota 1100 68 60
Ehrlichia ruminantium (strain Gardel) Eukaryota 948 79 58
Ehrlichia ruminantium (strain Welgevonden) Eukaryota 1122 80 57
Elusimicrobium minutum (strain Pei191) Eukaryota 1528 78 57
Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) Eukaryota 10535 74 43
Emiliania huxleyi virus 86 (isolate United Kingdom/English Channel/1999) Viruses 472 20 17
Encephalitozoon cuniculi (strain GB-M1) Eukaryota 1909 69 42
Encephalitozoon intestinalis (strain ATCC 50506) Eukaryota 1829 69 42
Encephalomyocarditis virus Viruses 1 100 54
Encephalomyocarditis virus (strain emc-b nondiabetogenic) Viruses 1 100 54
Encephalomyocarditis virus (strain emc-d diabetogenic) Viruses 1 100 54
Encephalomyocarditis virus (strain Rueckert) Viruses 1 100 54
Entamoeba dispar (strain ATCC PRA-260 / SAW760) Eukaryota 8606 58 32
Entamoeba histolytica Eukaryota 7959 60 32
Enterobacter aerogenes (strain ATCC 13048 / DSM 30053 / JCM 1235 / KCTC 2190 / NBRC 13534 / NCIMB 10102 / NCTC 10006) Eukaryota 4909 90 72
Enterobacter asburiae (strain LF7a) Eukaryota 4601 92 72
Enterobacter cloacae (strain SCF1) Eukaryota 4393 93 73
Enterobacter cloacae subsp. cloacae (strain ATCC 13047 / DSM 30054 / NBRC 13535 / NCDC 279-56) Eukaryota 5411 85 69
Enterobacter sp. (strain 638) Eukaryota 4236 93 71
Enterobacteria phage 186 Viruses 43 84 65
Enterobacteria phage alpha3 Viruses 20 90 86
Enterobacteria phage f1 Viruses 48 79 54
Enterobacteria phage fd Viruses 9 67 51
Enterobacteria phage fr Viruses 4 100 96
Enterobacteria phage G4 Viruses 54 100 77
Enterobacteria phage GA Viruses 4 100 97
Enterobacteria phage If1 Viruses 10 60 37
Enterobacteria phage IKe Viruses 9 67 48
Enterobacteria phage lambda Viruses 119 85 61
Enterobacteria phage M13 Viruses 9 67 51
Enterobacteria phage MS2 Viruses 18 100 96
Enterobacteria phage Mu Viruses 52 63 55
Enterobacteria phage MX1 Viruses 4 100 82
Enterobacteria phage N15 Viruses 60 58 41
Enterobacteria phage N4 Viruses 72 24 13
Enterobacteria phage P1 Viruses 127 32 22
Enterobacteria phage P2 Viruses 87 77 56
Enterobacteria phage P22 Viruses 147 67 57
Enterobacteria phage P4 Viruses 13 54 41
Enterobacteria phage Phieco32 Viruses 128 17 14
Enterobacteria phage phiK Viruses 10 90 86
Enterobacteria phage phiKMV Viruses 48 19 19
Enterobacteria phage phiX174 Viruses 282 100 82
Enterobacteria phage PRD1 Viruses 61 36 48
Enterobacteria phage S13 Viruses 21 100 84
Enterobacteria phage SP Viruses 4 100 83
Enterobacteria phage SP6 Viruses 64 27 24
Enterobacteria phage T1 Viruses 78 38 33
Enterobacteria phage T4 Viruses 550 43 41
Enterobacteria phage T5 Viruses 255 31 28
Enterobacteria phage T7 Viruses 244 52 37
Enterococcus faecalis (strain 62) Eukaryota 3010 82 65
Enterococcus faecalis (strain ATCC 47077 / OG1RF) Eukaryota 2579 86 66
Enterococcus faecalis (strain ATCC 700802 / V583) Eukaryota 3240 78 62
Enterococcus faecium (strain Aus0004) Eukaryota 2826 83 65
Enterococcus phage phiEF24C Viruses 221 19 19
Enterocytozoon bieneusi (strain H348) Eukaryota 3311 47 35
Epstein-Barr virus (strain AG876) Viruses 80 86 63
Epstein-Barr virus (strain B95-8) Viruses 117 65 50
Epstein-Barr virus (strain GD1) Viruses 75 84 60
Equine arteritis virus (strain Bucyrus) Viruses 8 88 54
Equine herpesvirus 1 (strain Ab4p) Viruses 75 92 60
Equine herpesvirus 1 (strain V592) Viruses 74 92 60
Equine herpesvirus 2 (strain 86/87) Viruses 77 87 63
Equine herpesvirus 4 (strain 1942) Viruses 76 92 59
Equine rhinitis B virus 1 (strain Equine/Switzerland/P1436/71/1971) Viruses 1 100 54
Equus caballus Eukaryota 22679 91 48
Equus caballus papillomavirus 1 (strain Olson) Viruses 7 86 84
Erwinia amylovora (strain ATCC 49946 / CCPPB 0273 / Ea273 / 27-3) Eukaryota 3563 85 68
Erwinia amylovora (strain CFBP1430) Eukaryota 3732 80 68
Erwinia billingiae (strain Eb661) Eukaryota 4915 89 71
Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) Eukaryota 4459 89 69
Erwinia pyrifoliae (strain DSM 12163 / CIP 106111 / Ep16/96) Eukaryota 3938 79 66
Erwinia pyrifoliae (strain Ep1/96) Eukaryota 3618 86 66
Erwinia sp. (strain Ejp617) Eukaryota 3632 84 67
Erwinia tasmaniensis (strain DSM 17950 / Et1/99) Eukaryota 3618 88 68
Erysipelothrix rhusiopathiae (strain Fujisawa) Eukaryota 1679 82 62
Erythrobacter litoralis (strain HTCC2594) Eukaryota 2999 81 61
Escherichia coli (strain 'clone D i14') Eukaryota 4907 85 69
Escherichia coli (strain 'clone D i2') Eukaryota 4907 85 69
Escherichia coli (strain 55989 / EAEC) Eukaryota 4791 90 71
Escherichia coli (strain ATCC 33849 / DSM 4235 / NCIB 12045 / K12 / DH1) Eukaryota 4583 92 72
Escherichia coli (strain ATCC 55124 / KO11) Eukaryota 4637 91 71
Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) Eukaryota 4173 95 72
Escherichia coli (strain ATCC 9637 / CCM 2024 / DSM 1116 / NCIMB 8666 / NRRL B-766 / W) Eukaryota 4585 92 71
Escherichia coli (strain B / BL21-DE3) Eukaryota 4842 91 72
Escherichia coli (strain B / REL606) Eukaryota 4142 94 73
Escherichia coli (strain K12 / DH10B) Eukaryota 3990 95 73
Escherichia coli (strain K12 / MC4100 / BW2952) Eukaryota 4042 95 73
Escherichia coli (strain K12) Eukaryota 4305 93 72
Escherichia coli (strain SE11) Eukaryota 4978 88 70
Escherichia coli (strain SMS-3-5 / SECEC) Eukaryota 4876 88 70
Escherichia coli (strain UM146) Eukaryota 4779 91 72
Escherichia coli (strain UTI89 / UPEC) Eukaryota 5188 85 69
Escherichia coli O103:H2 (strain 12009 / EHEC) Eukaryota 4964 91 70
Escherichia coli O111:H- (strain 11128 / EHEC) Eukaryota 5238 88 69
Escherichia coli O127:H6 (strain E2348/69 / EPEC) Eukaryota 4594 91 71
Escherichia coli O139:H28 (strain E24377A / ETEC) Eukaryota 4915 86 70
Escherichia coli O150:H5 (strain SE15) Eukaryota 4461 93 72
Escherichia coli O157:H7 Eukaryota 6497 85 67
Escherichia coli O157:H7 (strain EC4115 / EHEC) Eukaryota 5277 85 69
Escherichia coli O157:H7 (strain TW14359 / EHEC) Eukaryota 5255 88 69
Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) Eukaryota 4972 90 70
Escherichia coli O18:K1:H7 (strain IHE3034 / ExPEC) Eukaryota 4748 89 71
Escherichia coli O1:K1 / APEC Eukaryota 4858 88 68
Escherichia coli O26:H11 (strain 11368 / EHEC) Eukaryota 5326 90 70
Escherichia coli O44:H18 (strain 042 / EAEC) Eukaryota 4884 90 69
Escherichia coli O45:K1 (strain S88 / ExPEC) Eukaryota 4804 91 71
Escherichia coli O55:H7 (strain CB9615 / EPEC) Eukaryota 5084 89 69
Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) Eukaryota 5334 82 68
Escherichia coli O6:K15:H31 (strain 536 / UPEC) Eukaryota 4604 90 71
Escherichia coli O78:H11 (strain H10407 / ETEC) Eukaryota 4778 91 70
Escherichia coli O7:K1 (strain IAI39 / ExPEC) Eukaryota 4553 92 71
Escherichia coli O8 (strain IAI1) Eukaryota 4326 92 72
Escherichia coli O81 (strain ED1a) Eukaryota 4939 89 70
Escherichia coli O83:H1 (strain NRG 857C / AIEC) Eukaryota 4575 92 72
Escherichia coli O9:H4 (strain HS) Eukaryota 4308 90 72
Escherichia coli OR:K5:H- (strain ABU 83972) Eukaryota 4786 90 71
Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) Eukaryota 4306 91 70
Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) Eukaryota 2663 84 61
Eubacterium eligens (strain ATCC 27750 / VPI C15-48) Eukaryota 2761 77 59
Eubacterium limosum (strain KIST612) Eukaryota 4506 72 60
Eubacterium rectale (strain ATCC 33656 / VPI 0990) Eukaryota 3545 70 56
European bat lyssavirus 1 (strain Bat/Germany/RV9/1968) Viruses 5 100 94
European bat lyssavirus 2 (strain Human/Scotland/RV1333/2002) Viruses 5 100 94
European elk papillomavirus Viruses 15 47 70
European mountain ash ringspot-associated virus (isolate Sorbus aucuparia) Viruses 4 25 22
Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) Eukaryota 3005 85 67
Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) Eukaryota 3020 83 66
Exophiala dermatitidis (strain ATCC 34100 / CBS 525.76 / NIH/UT8656) Eukaryota 9390 74 41
Faba bean necrotic yellows virus (isolate Egyptian EV1-93) Viruses 11 55 49
Faba bean necrotic yellows virus (isolate SV292-88) Viruses 13 46 45
Feline calicivirus (strain Cat/United States/Urbana/1960) Viruses 3 100 42
Feline calicivirus (strain CFI/68 FIV) Viruses 3 100 42
Feline calicivirus (strain F9) Viruses 3 100 42
Feline calicivirus (strain Japanese F4) Viruses 3 100 42
Feline coronavirus (strain FIPV WSU-79/1146) Viruses 10 80 57
Feline foamy virus Viruses 5 60 64
Feline panleukopenia virus (strain 193) Viruses 2 100 78
Ferrimonas balearica (strain DSM 9799 / CCM 4581 / PAT) Eukaryota 3781 87 65
Ferroglobus placidus (strain DSM 10642 / AEDII12DO) Archaea 2463 78 61
Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) Eukaryota 1725 87 62
Fibrobacter succinogenes (strain ATCC 19169 / S85) Eukaryota 3796 70 47
Figwort mosaic virus (strain DxS) Viruses 7 57 36
Fiji disease virus (isolate Sugarcane) Viruses 12 42 19
Filifactor alocis (strain ATCC 35896 / D40 B5) Eukaryota 1615 81 60
Finegoldia magna (strain ATCC 29328) Eukaryota 1813 83 61
Flavobacteriaceae bacterium (strain 3519-10) Eukaryota 2533 76 56
Flavobacterium branchiophilum (strain FL-15) Eukaryota 2848 75 53
Flavobacterium columnare (strain ATCC 49512 / CIP 103533 / TG 44/87) Eukaryota 2617 77 54
Flavobacterium indicum (strain DSM 17447 / CIP 109464 / GPTSA100-9) Eukaryota 2649 77 54
Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) Eukaryota 5016 77 54
Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) Eukaryota 2408 78 57
Flexal virus (isolate Rat/Brazil/BeAn 293022/1975) Viruses 4 100 98
Flexistipes sinusarabici (strain DSM 4947 / MAS 10) Eukaryota 2185 88 67
Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) Eukaryota 4016 68 45
Foot-and-mouth disease virus (isolate Swine/Taiwan/1997) Viruses 1 100 65
Foot-and-mouth disease virus (strain A10-61) Viruses 1 100 65
Foot-and-mouth disease virus (strain A12) Viruses 1 100 65
Foot-and-mouth disease virus (strain A22/550 Azerbaijan 65) Viruses 1 100 65
Foot-and-mouth disease virus (strain O1) Viruses 5 80 63
Fowl adenovirus A serotype 1 (strain CELO / Phelps) Viruses 38 53 47
Fowlpox virus (strain NVSL) Viruses 251 74 64
Foxtail mosaic virus Viruses 5 100 68
Francisella cf. novicida (strain 3523) Eukaryota 1854 83 67
Francisella cf. novicida (strain Fx1) Eukaryota 1810 84 68
Francisella philomiragia subsp. philomiragia (strain ATCC 25017) Eukaryota 1875 86 67
Francisella sp. (strain TX077308) Eukaryota 1975 82 66
Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) Eukaryota 1515 84 69
Francisella tularensis subsp. holarctica (strain LVS) Eukaryota 1678 84 68
Francisella tularensis subsp. holarctica (strain OSU18) Eukaryota 1510 83 68
Francisella tularensis subsp. mediasiatica (strain FSC147) Eukaryota 1388 87 69
Francisella tularensis subsp. novicida (strain U112) Eukaryota 1719 86 67
Francisella tularensis subsp. tularensis (strain FSC 198) Eukaryota 1528 84 68
Francisella tularensis subsp. tularensis (strain NE061598) Eukaryota 1709 80 68
Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4) Eukaryota 1528 84 68
Francisella tularensis subsp. tularensis (strain WY96-3418) Eukaryota 1573 84 68
Frankia alni (strain ACN14a) Eukaryota 6708 71 53
Frankia sp. (strain CcI3) Eukaryota 4441 78 53
Frankia sp. (strain EAN1pec) Eukaryota 7133 78 53
Frankia sp. (strain EuI1c) Eukaryota 7079 82 55
Frankia symbiont subsp. Datisca glomerata Eukaryota 4063 77 55
Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) Eukaryota 3098 86 65
Friend murine leukemia virus (isolate 57) Viruses 3 100 66
Friend murine leukemia virus (isolate FB29) Viruses 3 100 66
Friend murine leukemia virus (isolate PVC-211) Viruses 3 100 66
Fringilla coelebs papillomavirus (isolate Chaffinch/Netherlands/Dutch) Viruses 6 67 53
Frog adenovirus 1 (strain ATCC VR-896) Viruses 23 65 63
Frog virus 3 (isolate Goorha) Viruses 98 32 28
Fusarium oxysporum (strain Fo5176) Eukaryota 17784 65 38
Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) Eukaryota 2046 82 65
Gallibacterium anatis (strain UMN179) Eukaryota 2482 88 67
Gallid herpesvirus 2 (strain Chicken/Md5/ATCC VR-987) Viruses 90 81 58
Gallionella capsiferriformans (strain ES-2) Eukaryota 2853 83 63
Gallus gallus Eukaryota 23430 83 48
Gardnerella vaginalis (strain 409-05) Eukaryota 1257 80 57
Gardnerella vaginalis (strain ATCC 14019 / 317) Eukaryota 1365 80 57
Gardnerella vaginalis (strain HMP9231) Eukaryota 1313 83 58
Gasterosteus aculeatus Eukaryota 27249 89 50
Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) Eukaryota 3932 80 54
Geobacillus kaustophilus (strain HTA426) Eukaryota 3516 84 67
Geobacillus sp. (strain C56-T3) Eukaryota 3315 87 69
Geobacillus sp. (strain WCH70) Eukaryota 3048 87 69
Geobacillus sp. (strain Y4.1MC1) Eukaryota 3602 86 69
Geobacillus sp. (strain Y412MC10) Eukaryota 6237 85 60
Geobacillus sp. (strain Y412MC52) Eukaryota 3418 86 68
Geobacillus sp. (strain Y412MC61) Eukaryota 3414 86 68
Geobacillus thermodenitrificans (strain NG80-2) Eukaryota 3424 86 69
Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) Eukaryota 4048 82 60
Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) Eukaryota 3644 83 61
Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) Eukaryota 3467 86 61
Geobacter sp. (strain FRC-32) Eukaryota 3797 83 60
Geobacter sp. (strain M18) Eukaryota 4406 81 58
Geobacter sp. (strain M21) Eukaryota 4068 82 59
Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) Eukaryota 3415 83 61
Geobacter sulfurreducens (strain DL-1 / KN400) Eukaryota 3313 85 62
Geobacter uraniireducens (strain Rf4) Eukaryota 4255 84 59
Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) Eukaryota 4794 80 59
Getah virus Viruses 2 100 68
Giardia intestinalis (strain ATCC 50581 / GS clone H7) Eukaryota 4466 53 23
Giardia intestinalis (strain ATCC 50803 / WB clone C6) Eukaryota 7152 38 23
Giardia intestinalis (strain P15) Eukaryota 4998 54 25
Giardia lamblia virus (isolate Wang) Viruses 2 50 9
Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) Eukaryota 13140 64 39
Gibbon ape leukemia virus Viruses 3 100 64
Gibbon hepatitis B virus subtype ayw3q (isolate Hope) Viruses 5 100 96
Gill-associated virus (isolate Giant tiger prawn/Australia) Viruses 5 40 8
Glaciecola nitratireducens (strain JCM 12485 / KCTC 12276 / FR1064) Eukaryota 3653 82 63
Glaciecola sp. (strain 4H-3-7+YE-5) Eukaryota 4541 84 61
Glarea lozoyensis (strain ATCC 74030 / MF5533) Eukaryota 7904 56 40
Gloeobacter violaceus (strain PCC 7421) Eukaryota 4406 78 58
Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) Eukaryota 5838 80 61
Gluconacetobacter xylinus (strain NBRC 3288 / BCRC 11682 / LMG 1693) Eukaryota 3115 82 62
Gluconobacter oxydans (strain 621H) Eukaryota 2625 82 60
Glycine max Eukaryota 51553 84 47
Goose circovirus Viruses 4 50 55
Gordonia bronchialis (strain ATCC 25592 / DSM 43247 / JCM 3198 / NCTC 10667) Eukaryota 4548 81 60
Gordonia polyisoprenivorans (strain DSM 44266 / VH2) Eukaryota 5097 84 61
Gorilla gorilla gorilla n/a 27271 87 45
Gorilla hepatitis B virus (isolate Cameroon/gor97) Viruses 5 100 96
Gramella forsetii (strain KT0803) Eukaryota 3554 77 58
Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) Eukaryota 2429 85 61
Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) Eukaryota 4804 77 51
Grapevine chrome mosaic virus Viruses 2 100 29
Grapevine fanleaf virus Viruses 3 67 34
Grapevine fleck virus (isolate Italy/MT48) Viruses 4 50 40
Grapevine leafroll-associated virus 3 (isolate United States/NY1) Viruses 13 38 34
Grapevine virus A (isolate Is 151) Viruses 5 60 49
Grosmannia clavigera (strain kw1407 / UAMH 11150) Eukaryota 8311 75 39
Ground squirrel hepatitis virus (strain 27) Viruses 5 100 95
Groundnut rosette virus (strain MC1) Viruses 3 100 69
Guanarito virus (isolate Human/Venezuela/NH-95551/1990) Viruses 4 100 98
Haemophilus ducreyi (strain 35000HP / ATCC 700724) Eukaryota 1694 80 68
Haemophilus influenzae (strain 10810) Eukaryota 1870 89 71
Haemophilus influenzae (strain 86-028NP) Eukaryota 1792 90 71
Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) Eukaryota 1707 93 74
Haemophilus influenzae (strain PittEE) Eukaryota 1615 90 73
Haemophilus influenzae (strain PittGG) Eukaryota 1662 87 72
Haemophilus influenzae (strain R2846 / 12) Eukaryota 1631 94 73
Haemophilus influenzae (strain R2866) Eukaryota 1793 92 72
Haemophilus parainfluenzae (strain T3T1) Eukaryota 1970 90 71
Haemophilus parasuis serovar 5 (strain SH0165) Eukaryota 2002 88 70
Haemophilus phage HP1 Viruses 41 56 44
Haemophilus somnus (strain 129Pt) Eukaryota 1792 89 67
Haemophilus somnus (strain 2336) Eukaryota 1971 88 65
Hahella chejuensis (strain KCTC 2396) Eukaryota 6750 72 56
Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) Archaea 3779 68 59
Halanaerobium praevalens (strain ATCC 33744 / DSM 2228 / GSL) Eukaryota 2055 91 69
Halanaerobium sp. (strain sapolanicus) Eukaryota 2250 91 69
Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) Eukaryota 6684 71 45
Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) Eukaryota 6704 73 48
Haloarcula hispanica (strain ATCC 33960 / DSM 4426 / JCM 8911 / NBRC 102182 / NCIMB 2187 / VKM B-1755) Archaea 3855 70 56
Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) Archaea 4234 67 53
Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) Archaea 2615 70 56
Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) Archaea 2426 71 57
Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) Archaea 3987 69 56
Halogeometricum borinquense (strain ATCC 700274 / DSM 11551 / JCM 10706 / PR3) Archaea 3894 69 54
Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) Archaea 3343 68 54
Halomonas elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 / NCIMB 2198 / 1H9) Eukaryota 3471 92 69
Halopiger xanaduensis (strain DSM 18323 / JCM 14033 / SH-6) Archaea 4221 68 54
Haloquadratum walsbyi (strain DSM 16790) Archaea 2645 71 54
Haloquadratum walsbyi (strain DSM 16854 / JCM 12705 / C23) Archaea 2729 70 54
Halorhabdus utahensis (strain DSM 12940 / JCM 11049 / AX-2) Archaea 2998 71 53
Halorhodospira halophila (strain DSM 244 / SL1) Eukaryota 2406 90 66
Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) Archaea 3495 67 53
Haloterrigena turkmenica (strain ATCC 51198 / DSM 5511 / NCIMB 13204 / VKM B-1734) Archaea 5113 68 55
Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) Eukaryota 2324 88 67
Halothiobacillus neapolitanus (strain ATCC 23641 / c2) Eukaryota 2352 88 66
Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) Eukaryota 2045 71 58
Hamster parvovirus H1 Viruses 2 100 78
Hamster polyomavirus Viruses 5 100 71
Hantaan virus (strain 76-118) Viruses 3 100 60
Harpegnathos saltator Eukaryota 15029 61 38
Helicobacter acinonychis (strain Sheeba) Eukaryota 1595 75 61
Helicobacter bizzozeronii (strain CIII-1) Eukaryota 1959 70 57
Helicobacter felis (strain ATCC 49179 / NCTC 12436 / CS1) Eukaryota 1646 76 59
Helicobacter hepaticus (strain ATCC 51449 / 3B1) Eukaryota 1872 74 59
Helicobacter mustelae (strain ATCC 43772 / LMG 18044 / NCTC 12198 / 12198) Eukaryota 1400 83 62
Helicobacter pylori (strain 35A) Eukaryota 1464 80 62
Helicobacter pylori (strain 51) Eukaryota 1412 83 63
Helicobacter pylori (strain 52) Eukaryota 1403 84 62
Helicobacter pylori (strain 908) Eukaryota 1594 76 61
Helicobacter pylori (strain ATCC 700392 / 26695) Eukaryota 1551 79 60
Helicobacter pylori (strain B38) Eukaryota 1369 84 63
Helicobacter pylori (strain B8) Eukaryota 1710 74 59
Helicobacter pylori (strain Cuz20) Eukaryota 1562 78 61
Helicobacter pylori (strain F16) Eukaryota 1486 82 62
Helicobacter pylori (strain F30) Eukaryota 1475 83 62
Helicobacter pylori (strain F32) Eukaryota 1489 82 61
Helicobacter pylori (strain F57) Eukaryota 1515 81 61
Helicobacter pylori (strain G27) Eukaryota 1501 80 61
Helicobacter pylori (strain Gambia94/24) Eukaryota 1599 76 60
Helicobacter pylori (strain HPAG1) Eukaryota 1540 81 61
Helicobacter pylori (strain India7) Eukaryota 1596 76 59
Helicobacter pylori (strain J99) Eukaryota 1487 83 61
Helicobacter pylori (strain Lithuania75) Eukaryota 1559 77 61
Helicobacter pylori (strain P12) Eukaryota 1572 78 60
Helicobacter pylori (strain PeCan4) Eukaryota 1563 78 61
Helicobacter pylori (strain Sat464) Eukaryota 1503 79 62
Helicobacter pylori (strain Shi470) Eukaryota 1563 76 61
Helicobacter pylori (strain SJM180) Eukaryota 1578 77 60
Helicobacter pylori (strain SouthAfrica7) Eukaryota 1561 78 60
Helicobacter pylori (strain v225d) Eukaryota 1547 77 61
Helicoverpa armigera stunt virus Viruses 3 67 68
Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) Eukaryota 2920 75 61
Heliothis virescens ascovirus 3e Viruses 178 30 21
Helminthosporium victoriae virus-190S Viruses 2 100 76
Hendra virus (isolate Horse/Autralia/Hendra/1994) Viruses 9 89 83
Hepatitis B virus genotype A1 subtype adw (isolate Philippines/pFDW294/1988) Viruses 4 100 96
Hepatitis B virus genotype A1 subtype adw2 (isolate South Africa/84/2001) Viruses 5 100 97
Hepatitis B virus genotype A2 (isolate Japan/11D11HCCW/1998) Viruses 5 100 96
Hepatitis B virus genotype A2 subtype adw (isolate Japan/Nishioka/1983) Viruses 5 100 97
Hepatitis B virus genotype A2 subtype adw2 (isolate Germany/991/1990) Viruses 5 100 96
Hepatitis B virus genotype A2 subtype adw2 (strain Rutter 1979) Viruses 5 100 96
Hepatitis B virus genotype A3 (isolate Cameroon/CMR711/1994) Viruses 5 100 96
Hepatitis B virus genotype A3 (isolate Cameroon/CMR983/1994) Viruses 5 100 96
Hepatitis B virus genotype B/C subtype adw (isolate Okinawa/pODW282/1998) Viruses 5 100 97
Hepatitis B virus genotype B1 (isolate Japan/Ry30/2002) Viruses 5 100 96
Hepatitis B virus genotype B1 (isolate Japan/Yamagata-2/1998) Viruses 5 100 96
Hepatitis B virus genotype B1 subtype adw (isolate Japan/pJDW233/1988) Viruses 5 100 97
Hepatitis B virus genotype B2 (isolate Indonesia/pIDW420/1988) Viruses 5 100 97
Hepatitis B virus genotype B2 (isolate Vietnam/16091/1992) Viruses 6 100 96
Hepatitis B virus genotype B2 (isolate Vietnam/9873/1997) Viruses 5 100 96
Hepatitis B virus genotype B2 subtype adw (isolate China/patient4/1996) Viruses 5 100 96
Hepatitis B virus genotype C (isolate Vietnam/3270/2000) Viruses 5 100 96
Hepatitis B virus genotype C subtype adr (isolate Japan/A4/1994) Viruses 4 100 97
Hepatitis B virus genotype C subtype adr (isolate Japan/Nishioka/1983) Viruses 9 100 96
Hepatitis B virus genotype C subtype adr (isolate Korea/Kim/1989) Viruses 4 100 96
Hepatitis B virus genotype C subtype adr (strain Japan/adr4/1983) Viruses 5 100 96
Hepatitis B virus genotype C subtype ar (isolate Japan/S-207/1988) Viruses 5 100 96
Hepatitis B virus genotype C subtype ayr (isolate Human/Japan/Okamoto/-) Viruses 5 100 96
Hepatitis B virus genotype C subtype ayw (isolate Australia/AustRC/1992) Viruses 5 100 96
Hepatitis B virus genotype C subtype ayw (isolate China/Tibet127/2002) Viruses 5 100 96
Hepatitis B virus genotype D (isolate France/alpha1/1989) Viruses 5 100 96
Hepatitis B virus genotype D (isolate Germany/1-91/1991) Viruses 6 100 97
Hepatitis B virus genotype D subtype ayw (isolate Australia/AustKW/1991) Viruses 5 100 96
Hepatitis B virus genotype D subtype ayw (isolate France/Tiollais/1979) Viruses 7 71 85
Hepatitis B virus genotype D subtype ayw (isolate Italy/CI/1992) Viruses 5 100 96
Hepatitis B virus genotype D subtype ayw (isolate Japan/JYW796/1988) Viruses 5 100 96
Hepatitis B virus genotype E (isolate Chimpanzee/Ch195/1999) Viruses 4 100 96
Hepatitis B virus genotype E (isolate Cote d'Ivoire/ABI-129/2003) Viruses 4 100 96
Hepatitis B virus genotype E (isolate Cote d'Ivoire/ABI-212/2003) Viruses 4 100 96
Hepatitis B virus genotype E subtype ayw4 (isolate Kou) Viruses 4 100 96
Hepatitis B virus genotype F1 (isolate Argentina/sa11/2000) Viruses 5 100 96
Hepatitis B virus genotype F1 subtype adw4 (isolate El Salvador/1116Sal/1997) Viruses 4 100 96
Hepatitis B virus genotype F2 (isolate Argentina/sa16/2000) Viruses 5 100 96
Hepatitis B virus genotype F2 (isolate Brazil/w4B) Viruses 7 100 96
Hepatitis B virus genotype F2 subtype adw4q (isolate Senegal/9203) Viruses 5 100 96
Hepatitis B virus genotype G (isolate IG29227/2000) Viruses 4 100 95
Hepatitis B virus genotype G (isolate United States/USG17/2002) Viruses 4 100 95
Hepatitis B virus genotype H (isolate United States/LAS2523/2002) Viruses 4 100 96
Hepatitis B virus genotype H subtype adw4 (isolate Nicaragua/1853Nic/1997) Viruses 4 100 96
Hepatitis B virus genotype H subtype adw4 (isolate Nicaragua/2928Nic/1997) Viruses 5 100 96
Hepatitis C virus genotype 1a (isolate 1) Viruses 2 100 78
Hepatitis C virus genotype 1a (isolate H) Viruses 2 100 78
Hepatitis C virus genotype 1b (isolate BK) Viruses 1 100 78
Hepatitis C virus genotype 1b (isolate Con1) Viruses 1 100 78
Hepatitis C virus genotype 1b (isolate HC-J1) Viruses 1 100 78
Hepatitis C virus genotype 1b (isolate HC-JT) Viruses 1 100 78
Hepatitis C virus genotype 1b (isolate HCR6) Viruses 1 100 78
Hepatitis C virus genotype 1b (isolate Japanese) Viruses 1 100 78
Hepatitis C virus genotype 1b (isolate Taiwan) Viruses 1 100 78
Hepatitis C virus genotype 1b (strain HC-J4) Viruses 1 100 78
Hepatitis C virus genotype 1c (isolate HC-G9) Viruses 1 100 78
Hepatitis C virus genotype 1c (isolate India) Viruses 1 100 78
Hepatitis C virus genotype 2a (isolate HC-J6) Viruses 1 100 77
Hepatitis C virus genotype 2a (isolate JFH-1) Viruses 1 100 78
Hepatitis C virus genotype 2b (isolate HC-J8) Viruses 1 100 78
Hepatitis C virus genotype 2b (isolate JPUT971017) Viruses 1 100 78
Hepatitis C virus genotype 2c (isolate BEBE1) Viruses 1 100 78
Hepatitis C virus genotype 2k (isolate VAT96) Viruses 1 100 79
Hepatitis C virus genotype 3a (isolate k3a) Viruses 1 100 78
Hepatitis C virus genotype 3a (isolate NZL1) Viruses 1 100 78
Hepatitis C virus genotype 3b (isolate Tr-Kj) Viruses 1 100 78
Hepatitis C virus genotype 3k (isolate JK049) Viruses 1 100 78
Hepatitis C virus genotype 4a (isolate ED43) Viruses 1 100 75
Hepatitis C virus genotype 5a (isolate EUH1480) Viruses 1 100 75
Hepatitis C virus genotype 5a (isolate SA13) Viruses 1 100 78
Hepatitis C virus genotype 6a (isolate 6a33) Viruses 1 100 79
Hepatitis C virus genotype 6a (isolate EUHK2) Viruses 1 100 78
Hepatitis C virus genotype 6b (isolate Th580) Viruses 1 100 78
Hepatitis C virus genotype 6d (isolate VN235) Viruses 1 100 77
Hepatitis C virus genotype 6g (isolate JK046) Viruses 1 100 78
Hepatitis C virus genotype 6h (isolate VN004) Viruses 1 100 78
Hepatitis C virus genotype 6k (isolate VN405) Viruses 1 100 78
Hepatitis delta virus genotype I (isolate American) Viruses 2 100 95
Hepatitis delta virus genotype I (isolate D380) Viruses 2 100 95
Hepatitis delta virus genotype I (isolate Italian) Viruses 2 100 95
Hepatitis delta virus genotype I (isolate Japanese M-1) Viruses 2 100 95
Hepatitis delta virus genotype I (isolate Japanese M-2) Viruses 2 100 95
Hepatitis delta virus genotype I (isolate Japanese S-2) Viruses 2 100 95
Hepatitis delta virus genotype I (isolate Lebanon-1) Viruses 2 100 95
Hepatitis delta virus genotype I (isolate Nauru) Viruses 2 100 95
Hepatitis delta virus genotype I (isolate US-2) Viruses 2 100 95
Hepatitis delta virus genotype I (isolate Woodchuck) Viruses 2 100 95
Hepatitis delta virus genotype II (isolate 7/18/83) Viruses 2 100 95
Hepatitis delta virus genotype II (isolate Japanese S-1) Viruses 2 100 95
Hepatitis delta virus genotype II (isolate TW2476) Viruses 2 100 95
Hepatitis delta virus genotype III (isolate Peru-1) Viruses 2 100 95
Hepatitis delta virus genotype III (isolate VnzD8349) Viruses 2 100 95
Hepatitis delta virus genotype III (isolate VnzD8375) Viruses 2 100 95
Hepatitis delta virus genotype III (isolate VnzD8624) Viruses 2 100 95
Hepatitis E virus genotype 1 (isolate Human/Burma) Viruses 3 100 82
Hepatitis E virus genotype 1 (isolate Human/China/HeBei/1987) Viruses 3 100 82
Hepatitis E virus genotype 1 (isolate Human/India/Hyderabad) Viruses 3 100 82
Hepatitis E virus genotype 1 (isolate Human/Myanmar/HEVNE8L) Viruses 3 100 82
Hepatitis E virus genotype 1 (isolate Human/Pakistan/Sar-55) Viruses 3 100 82
Hepatitis E virus genotype 2 (isolate Human/Mexico) Viruses 3 100 81
Hepatitis E virus genotype 3 (isolate Human/United States/US2) Viruses 3 100 82
Hepatitis E virus genotype 3 (isolate Swine/United States/swUS1) Viruses 3 100 82
Hepatitis E virus genotype 4 (isolate Human/China/T1) Viruses 3 100 82
Herbaspirillum seropedicae (strain SmR1) Eukaryota 4732 88 65
Herminiimonas arsenicoxydans Eukaryota 3274 84 65
Heron hepatitis B virus Viruses 4 100 94
Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) Eukaryota 5254 77 52
Heterocephalus glaber Eukaryota 21410 87 45
Heterosigma akashiwo RNA virus (strain SOG263) Viruses 1 100 32
Heterosigma akashiwo virus 01 Viruses 4 75 58
Hippea maritima (strain ATCC 700847 / DSM 10411 / MH2) Eukaryota 1653 90 69
Hirame rhabdovirus (strain Korea/CA 9703/1997) Viruses 6 100 77
Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418) Eukaryota 3187 84 62
His1 virus (isolate Australia/Victoria) Viruses 35 9 9
Hodgkinia cicadicola (strain Dsem) Eukaryota 169 73 62
Homo sapiens Eukaryota 70246 73 44
Human adenovirus C serotype 1 (strain Adenoid 71) Viruses 36 97 74
Human adenovirus C serotype 2 Viruses 42 76 68
Human astrovirus-1 Viruses 3 100 45
Human astrovirus-4 Viruses 3 100 44
Human astrovirus-5 Viruses 3 100 44
Human astrovirus-8 Viruses 3 100 45
Human coronavirus 229E Viruses 8 100 49
Human coronavirus HKU1 (isolate N1) Viruses 9 100 54
Human coronavirus HKU1 (isolate N2) Viruses 9 100 54
Human coronavirus HKU1 (isolate N5) Viruses 9 100 54
Human coronavirus NL63 Viruses 7 100 52
Human coronavirus OC43 Viruses 10 100 55
Human cytomegalovirus (strain AD169) Viruses 195 52 51
Human cytomegalovirus (strain Merlin) Viruses 168 61 52
Human cytomegalovirus (strain Toledo) Viruses 165 62 53
Human cytomegalovirus (strain Towne) Viruses 163 62 53
Human enterovirus 70 (strain J670/71) Viruses 1 100 74
Human enterovirus 71 (strain 7423/MS/87) Viruses 1 100 74
Human enterovirus 71 (strain BrCr) Viruses 1 100 74
Human hepatitis A virus genotype IA (isolate GBM) Viruses 1 100 53
Human hepatitis A virus genotype IA (isolate H2) Viruses 1 100 53
Human hepatitis A virus genotype IA (isolate LA) Viruses 1 100 53
Human hepatitis A virus genotype IB (isolate HM175) Viruses 1 100 53
Human hepatitis A virus genotype IB (isolate MBB) Viruses 1 100 53
Human hepatitis A virus genotype IIA (isolate CF-53) Viruses 1 100 53
Human hepatitis A virus genotype IIB (isolate SLF88) Viruses 1 100 53
Human hepatitis A virus genotype IIIA (isolate NOR-21) Viruses 1 100 53
Human hepatitis A virus genotype IIIB (isolate HAJ85-1) Viruses 1 100 53
Human herpesvirus 1 (strain 17) Viruses 73 95 61
Human herpesvirus 2 (strain HG52) Viruses 74 95 60
Human herpesvirus 6A (strain Uganda-1102) Viruses 103 65 56
Human herpesvirus 6B (strain Z29) Viruses 97 72 59
Human herpesvirus 7 (strain JI) Viruses 102 65 60
Human herpesvirus 8 type P (isolate GK18) Viruses 86 88 63
Human immunodeficiency virus type 1 group M subtype A (isolate MAL) Viruses 9 100 84
Human immunodeficiency virus type 1 group M subtype B (isolate ARV2/SF2) Viruses 9 100 83
Human immunodeficiency virus type 1 group M subtype B (isolate BH10) Viruses 9 100 83
Human immunodeficiency virus type 1 group M subtype B (isolate BRU/LAI) Viruses 9 100 83
Human immunodeficiency virus type 1 group M subtype B (isolate HXB2) Viruses 9 100 84
Human immunodeficiency virus type 1 group M subtype B (isolate JRCSF) Viruses 9 100 83
Human immunodeficiency virus type 1 group M subtype B (isolate MN) Viruses 9 100 83
Human immunodeficiency virus type 1 group M subtype B (isolate RF/HAT3) Viruses 9 100 83
Human immunodeficiency virus type 1 group M subtype B (isolate YU-2) Viruses 9 100 83
Human immunodeficiency virus type 1 group M subtype B (strain 89.6) Viruses 9 100 83
Human immunodeficiency virus type 1 group M subtype C (isolate 92BR025) Viruses 9 100 83
Human immunodeficiency virus type 1 group M subtype C (isolate ETH2220) Viruses 9 100 84
Human immunodeficiency virus type 1 group M subtype D (isolate ELI) Viruses 9 100 83
Human immunodeficiency virus type 1 group M subtype F1 (isolate 93BR020) Viruses 9 100 84
Human immunodeficiency virus type 1 group M subtype F1 (isolate VI850) Viruses 9 100 83
Human immunodeficiency virus type 1 group M subtype H (isolate 90CF056) Viruses 9 100 83
Human immunodeficiency virus type 1 group N (isolate YBF106) Viruses 9 100 83
Human immunodeficiency virus type 1 group N (isolate YBF30) Viruses 9 100 83
Human immunodeficiency virus type 1 group O (isolate ANT70) Viruses 9 100 82
Human immunodeficiency virus type 1 group O (isolate MVP5180) Viruses 9 100 82
Human immunodeficiency virus type 2 subtype A (isolate BEN) Viruses 9 100 78
Human immunodeficiency virus type 2 subtype A (isolate CAM2) Viruses 9 100 80
Human immunodeficiency virus type 2 subtype A (isolate D194) Viruses 9 100 80
Human immunodeficiency virus type 2 subtype A (isolate Ghana-1) Viruses 9 100 80
Human immunodeficiency virus type 2 subtype A (isolate KR) Viruses 9 100 78
Human immunodeficiency virus type 2 subtype A (isolate ROD) Viruses 9 100 80
Human immunodeficiency virus type 2 subtype A (isolate SBLISY) Viruses 9 100 79
Human immunodeficiency virus type 2 subtype A (isolate ST) Viruses 10 100 78
Human immunodeficiency virus type 2 subtype B (isolate EHO) Viruses 10 100 78
Human immunodeficiency virus type 2 subtype B (isolate UC1) Viruses 9 100 79
Human metapneumovirus (strain CAN97-83) Viruses 9 78 75
Human papillomavirus type 10 Viruses 7 100 90
Human papillomavirus type 11 Viruses 9 89 87
Human papillomavirus type 12 Viruses 6 100 86
Human papillomavirus type 13 Viruses 8 100 90
Human papillomavirus type 14 Viruses 4 100 88
Human papillomavirus type 15 Viruses 6 100 88
Human papillomavirus type 16 Viruses 8 100 89
Human papillomavirus type 17 Viruses 6 100 89
Human papillomavirus type 18 Viruses 8 100 88
Human papillomavirus type 19 Viruses 6 100 85
Human papillomavirus type 1a Viruses 8 75 85
Human papillomavirus type 20 Viruses 7 86 78
Human papillomavirus type 21 Viruses 7 86 75
Human papillomavirus type 22 Viruses 7 86 82
Human papillomavirus type 23 Viruses 7 86 80
Human papillomavirus type 25 Viruses 6 100 86
Human papillomavirus type 26 Viruses 6 100 90
Human papillomavirus type 27 Viruses 6 100 85
Human papillomavirus type 28 Viruses 7 100 90
Human papillomavirus type 29 Viruses 7 100 89
Human papillomavirus type 2a Viruses 7 100 88
Human papillomavirus type 3 Viruses 6 100 90
Human papillomavirus type 30 Viruses 6 100 89
Human papillomavirus type 31 Viruses 8 100 91
Human papillomavirus type 32 Viruses 6 100 90
Human papillomavirus type 33 Viruses 8 100 91
Human papillomavirus type 34 Viruses 6 100 90
Human papillomavirus type 35 Viruses 6 100 90
Human papillomavirus type 36 Viruses 7 86 78
Human papillomavirus type 37 Viruses 7 86 81
Human papillomavirus type 38 Viruses 7 86 82
Human papillomavirus type 39 Viruses 8 100 90
Human papillomavirus type 4 Viruses 7 86 84
Human papillomavirus type 40 Viruses 6 100 90
Human papillomavirus type 41 Viruses 11 55 76
Human papillomavirus type 42 Viruses 8 88 86
Human papillomavirus type 44 Viruses 7 100 89
Human papillomavirus type 45 Viruses 6 100 89
Human papillomavirus type 47 Viruses 8 75 70
Human papillomavirus type 49 Viruses 6 100 87
Human papillomavirus type 5 Viruses 8 75 73
Human papillomavirus type 51 Viruses 8 100 91
Human papillomavirus type 52 Viruses 6 100 89
Human papillomavirus type 53 Viruses 5 100 89
Human papillomavirus type 54 Viruses 7 100 90
Human papillomavirus type 56 Viruses 5 100 88
Human papillomavirus type 57 Viruses 7 100 89
Human papillomavirus type 58 Viruses 8 100 91
Human papillomavirus type 5b Viruses 9 67 70
Human papillomavirus type 61 Viruses 7 100 90
Human papillomavirus type 63 Viruses 7 100 88
Human papillomavirus type 65 Viruses 7 86 83
Human papillomavirus type 66 Viruses 7 100 87
Human papillomavirus type 69 Viruses 8 100 90
Human papillomavirus type 6a Viruses 8 100 90
Human papillomavirus type 6b Viruses 9 89 88
Human papillomavirus type 7 Viruses 6 100 90
Human papillomavirus type 70 Viruses 8 100 90
Human papillomavirus type 8 Viruses 7 86 79
Human papillomavirus type 9 Viruses 6 100 88
Human parainfluenza 2 virus (strain Toshiba) Viruses 7 100 82
Human parechovirus 1 (strain Harris) Viruses 1 100 43
Human parechovirus 2 (strain CT86-6760) Viruses 1 100 51
Human parechovirus 2 (strain Williamson) Viruses 1 100 43
Human parvovirus B19 (isolate AU) Viruses 4 75 68
Human parvovirus B19 (strain HV) Viruses 3 100 77
Human picobirnavirus (strain Human/Thailand/Hy005102/-) Viruses 3 33 18
Human respiratory syncytial virus A (strain A2) Viruses 12 83 90
Human respiratory syncytial virus B (strain B1) Viruses 11 100 80
Human rhinovirus 14 Viruses 1 100 74
Human rhinovirus 16 Viruses 1 100 75
Human rhinovirus 1B Viruses 1 100 75
Human rhinovirus 2 Viruses 1 100 75
Human rhinovirus A serotype 89 (strain 41467-Gallo) Viruses 1 100 74
Human SARS coronavirus Viruses 15 93 52
Human spumaretrovirus Viruses 7 71 70
Human T-cell leukemia virus 1 (isolate Caribbea HS-35 subtype A) Viruses 9 89 65
Human T-cell leukemia virus 1 (strain Japan ATK-1 subtype A) Viruses 9 89 65
Human T-cell leukemia virus 2 Viruses 6 83 69
Human T-cell leukemia virus 3 (strain 2026ND) Viruses 6 83 66
Human T-cell leukemia virus 3 (strain Pyl43) Viruses 6 83 70
Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) Eukaryota 2039 81 65
Hydrogenobaculum sp. (strain Y04AAS1) Eukaryota 1626 83 65
Hyperthermus butylicus (strain DSM 5456 / JCM 9403) Archaea 1602 74 55
Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) Eukaryota 3452 77 59
Hyphomicrobium sp. (strain MC1) Eukaryota 4883 72 59
Hyphomonas neptunium (strain ATCC 15444) Eukaryota 3498 83 62
Hypocrea atroviridis (strain ATCC 20476 / IMI 206040) Eukaryota 11815 70 42
Hypocrea jecorina (strain QM6a) Eukaryota 9113 76 42
Hypocrea virens (strain Gv29-8 / FGSC 10586) Eukaryota 12389 72 43
Ichthyophthirius multifiliis (strain G5) Eukaryota 8049 66 39
Ictalurid herpesvirus 1 (strain Auburn) Viruses 76 14 7
Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) Eukaryota 2608 90 68
Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) Archaea 1434 70 55
Ignisphaera aggregans (strain DSM 17230 / JCM 13409 / AQ1.S1) Archaea 1929 68 52
Ilyobacter polytropus (strain DSM 2926 / CuHBu1) Eukaryota 2859 84 67
Indian cassava mosaic virus Viruses 7 100 76
Indian citrus ringspot virus (isolate Kinnow mandarin/India/K1/1996) Viruses 6 100 64
Infectious flacherie virus (isolate Silkworm) Viruses 1 100 29
Infectious hematopoietic necrosis virus (strain Oregon69) Viruses 6 100 77
Infectious hematopoietic necrosis virus (strain WRAC) Viruses 6 100 77
Infectious pancreatic necrosis virus (strain Jasper) Viruses 3 100 96
Infectious pancreatic necrosis virus (strain Sp) Viruses 2 100 97
Infectious salmon anemia virus (isolate Atlantic salmon/Norway/810/9/99) Viruses 10 30 36
Infectious spleen and kidney necrosis virus (isolate Mandarin fish/China/Nanhai/1998) Viruses 125 27 21
Influenza A virus (strain A/Beijing/39/1975 H3N2) Viruses 11 100 98
Influenza A virus (strain A/Brazil/11/1978 H1N1) Viruses 11 100 98
Influenza A virus (strain A/Brevig Mission/1/1918 H1N1) Viruses 11 100 98
Influenza A virus (strain A/Chicken/Pennsylvania/1/1983 H5N2) Viruses 12 100 98
Influenza A virus (strain A/Chicken/Scotland/1959 H5N1) Viruses 11 100 98
Influenza A virus (strain A/Chile/1/1983 H1N1) Viruses 11 100 98
Influenza A virus (strain A/China:Nanchang/11/1996 H1N1) Viruses 11 100 98
Influenza A virus (strain A/Duck/Czechoslovakia/1956 H4N6) Viruses 10 100 98
Influenza A virus (strain A/Duck/England/1/1956 H11N6) Viruses 11 100 98
Influenza A virus (strain A/Duck/Germany/1949 H10N7) Viruses 10 100 98
Influenza A virus (strain A/Duck/Hokkaido/8/1980 H3N8) Viruses 11 100 98
Influenza A virus (strain A/Duck/Hong Kong/2986.1/2000 H5N1 genotype C) Viruses 11 100 98
Influenza A virus (strain A/Goose/Guangdong/1/1996 H5N1 genotype Gs/Gd) Viruses 11 100 98
Influenza A virus (strain A/Grey teal/Australia/2/1979 H4N4) Viruses 12 100 98
Influenza A virus (strain A/Gull/Maryland/704/1977 H13N6) Viruses 11 100 98
Influenza A virus (strain A/Gull/Minnesota/945/1980 H13N6) Viruses 11 100 98
Influenza A virus (strain A/Henry/1936 H1N1) Viruses 11 100 98
Influenza A virus (strain A/Hickox/1940 H1N1) Viruses 11 100 98
Influenza A virus (strain A/Hong Kong/1/1968 H3N2) Viruses 11 100 98
Influenza A virus (strain A/Hong Kong/156/1997 H5N1 genotype Gs/Gd) Viruses 11 100 98
Influenza A virus (strain A/Hong Kong/5/1983 H3N2) Viruses 11 100 98
Influenza A virus (strain A/India/6263/1980 H1N1) Viruses 11 100 98
Influenza A virus (strain A/Malaysia:Malaya/302/1954 H1N1) Viruses 11 100 98
Influenza A virus (strain A/Memphis/1/1971 H3N2) Viruses 11 100 98
Influenza A virus (strain A/Memphis/101/1972 H3N2) Viruses 11 100 98
Influenza A virus (strain A/Memphis/102/1972 H3N2) Viruses 11 100 98
Influenza A virus (strain A/Memphis/110/1976 H3N2) Viruses 11 100 98
Influenza A virus (strain A/Memphis/18/1978 H3N2) Viruses 11 100 97
Influenza A virus (strain A/Memphis/2/1978 H3N2) Viruses 11 100 97
Influenza A virus (strain A/Memphis/4/1980 H3N2) Viruses 11 100 98
Influenza A virus (strain A/Port Chalmers/1/1973 H3N2) Viruses 11 100 98
Influenza A virus (strain A/Puerto Rico/8/1934 H1N1) Viruses 11 100 98
Influenza A virus (strain A/Russia:St.Petersburg/8/2006 H1N1) Viruses 11 100 98
Influenza A virus (strain A/Seal/Massachusetts/1/1980 H7N7) Viruses 12 92 97
Influenza A virus (strain A/Singapore/1/1957 H2N2) Viruses 10 100 98
Influenza A virus (strain A/Swine/Colorado/1/1977 H3N2) Viruses 11 100 98
Influenza A virus (strain A/Swine/Wisconsin/1/1961 H1N1) Viruses 11 91 98
Influenza A virus (strain A/Turkey/Ireland/1378/1983 H5N8) Viruses 11 100 98
Influenza A virus (strain A/Turkey/Minnesota/833/1980 H4N2) Viruses 11 100 98
Influenza A virus (strain A/Turkey/Ontario/6118/1968 H8N4) Viruses 11 100 98
Influenza A virus (strain A/Turkey/Wisconsin/1/1966 H9N2) Viruses 11 100 98
Influenza A virus (strain A/Udorn/307/1972 H3N2) Viruses 10 100 97
Influenza A virus (strain A/USA:Albany/12/1951 H1N1) Viruses 11 100 98
Influenza A virus (strain A/USA:Huston/AA/1945 H1N1) Viruses 11 100 98
Influenza A virus (strain A/USA:Iowa/1943 H1N1) Viruses 11 100 98
Influenza A virus (strain A/USA:Memphis/10/1996 H1N1) Viruses 11 100 98
Influenza A virus (strain A/USA:Phila/1935 H1N1) Viruses 11 100 98
Influenza A virus (strain A/USSR/90/1977 H1N1) Viruses 11 100 98
Influenza A virus (strain A/Wilson-Smith/1933 H1N1) Viruses 13 100 98
Influenza B virus (strain B/Lee/1940) Viruses 11 100 96
Influenza C virus (strain C/Ann Arbor/1/1950) Viruses 8 100 96
Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 / NBRC 12989 / 7 KIP) Eukaryota 3551 84 60
Invertebrate iridescent virus 3 Viruses 126 35 27
Invertebrate iridescent virus 6 Viruses 468 17 24
Ippy virus (isolate Rat/Central African Republic/Dak An B 188 d/1970) Viruses 4 100 97
Irkut virus Viruses 5 100 94
Isoptericola variabilis (strain 225) Eukaryota 2879 86 61
Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) Eukaryota 3721 74 45
Ixodes scapularis Eukaryota 20381 57 42
Jannaschia sp. (strain CCS1) Eukaryota 4271 84 63
Janthinobacterium sp. (strain Marseille) Eukaryota 3695 88 63
Japanese encephalitis virus (strain Jaoars982) Viruses 1 100 87
Japanese encephalitis virus (strain SA(v)) Viruses 1 100 87
Japanese encephalitis virus (strain SA-14) Viruses 1 100 87
JC polyomavirus Viruses 5 100 86
Jonesia denitrificans (strain ATCC 14870 / DSM 20603 / CIP 55134) Eukaryota 2495 81 59
Junonia coenia densovirus (isolate pBRJ/1990) Viruses 4 50 38
Kangiella koreensis (strain DSM 16069 / KCTC 12182 / SW-125) Eukaryota 2630 84 63
Kazachstania africana (strain ATCC 22294 / BCRC 22015 / CBS 2517 / CECT 1963 / NBRC 1671 / NRRL Y-8276) Eukaryota 5354 84 45
Ketogulonicigenium vulgare (strain Y25) Eukaryota 3209 85 66
Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) Eukaryota 4673 79 58
Kitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC A-0304 / NBRC 14216 / KM-6054) Eukaryota 7443 77 53
Klebsiella oxytoca (strain ATCC 8724 / DSM 4798 / JCM 20051 / NBRC 3318 / NRRL B-199 / KCTC 1686) Eukaryota 5483 92 72
Klebsiella pneumoniae (strain 342) Eukaryota 5738 86 72
Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) Eukaryota 5126 91 72
Klebsiella variicola (strain At-22) Eukaryota 5056 93 73
Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) Eukaryota 5071 84 46
Koala retrovirus Viruses 3 100 64
Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) Eukaryota 2352 85 63
Korarchaeum cryptofilum (strain OPF8) Archaea 1602 80 61
Koribacter versatilis (strain Ellin345) Eukaryota 4770 77 53
Kosmotoga olearia (strain TBF 19.5.1) Eukaryota 2087 84 62
Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) Eukaryota 6940 82 57
Krokinobacter sp. (strain 4H-3-7-5) Eukaryota 2978 80 57
Kunjin virus (strain MRM61C) Viruses 1 100 87
Kytococcus sedentarius (strain ATCC 14392 / DSM 20547 / CCM 314 / 541) Eukaryota 2531 82 61
Laccaria bicolor (strain S238N-H82 / ATCC MYA-4686) Eukaryota 17895 39 25
Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) Eukaryota 5093 85 46
Lacinutrix sp. (strain 5H-3-7-4) Eukaryota 2958 78 55
Lactobacillus acidophilus (strain 30SC) Eukaryota 2028 81 66
Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) Eukaryota 1859 85 67
Lactobacillus amylovorus (strain GRL 1112) Eukaryota 2020 79 66
Lactobacillus amylovorus (strain GRL 1118) Eukaryota 1913 81 67
Lactobacillus brevis (strain ATCC 367 / JCM 1170) Eukaryota 2201 83 67
Lactobacillus buchneri (strain NRRL B-30929) Eukaryota 2361 82 66
Lactobacillus casei (strain ATCC 334) Eukaryota 2708 80 65
Lactobacillus casei (strain BD-II) Eukaryota 3165 76 64
Lactobacillus casei (strain BL23) Eukaryota 2999 80 65
Lactobacillus casei (strain LC2W) Eukaryota 3118 76 64
Lactobacillus casei (strain Zhang) Eukaryota 2822 78 65
Lactobacillus crispatus (strain ST1) Eukaryota 2001 83 67
Lactobacillus delbrueckii subsp. bulgaricus (strain 2038) Eukaryota 1766 83 67
Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) Eukaryota 1519 81 67
Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) Eukaryota 1682 78 67
Lactobacillus delbrueckii subsp. bulgaricus (strain ND02) Eukaryota 2001 79 66
Lactobacillus fermentum (strain CECT 5716) Eukaryota 1043 93 72
Lactobacillus fermentum (strain NBRC 3956 / LMG 18251) Eukaryota 1818 89 71
Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) Eukaryota 1694 86 67
Lactobacillus helveticus (strain DPC 4571) Eukaryota 1580 90 69
Lactobacillus helveticus (strain H10) Eukaryota 1935 83 67
Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) Eukaryota 1809 86 66
Lactobacillus johnsonii (strain FI9785) Eukaryota 1726 85 67
Lactobacillus kefiranofaciens (strain ZW3) Eukaryota 2134 76 62
Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) Eukaryota 3088 84 66
Lactobacillus plantarum (strain JDM1) Eukaryota 2948 84 66
Lactobacillus plantarum (strain ST-III) Eukaryota 3028 82 66
Lactobacillus reuteri (strain ATCC 55730 / SD2112) Eukaryota 2201 83 66
Lactobacillus reuteri (strain DSM 20016) Eukaryota 1865 87 69
Lactobacillus reuteri (strain JCM 1112) Eukaryota 1792 89 70
Lactobacillus rhamnosus (strain ATCC 53103 / GG) Eukaryota 3228 77 64
Lactobacillus rhamnosus (strain Lc 705) Eukaryota 2946 79 65
Lactobacillus ruminis (strain ATCC 27782 / RF3) Eukaryota 1851 82 68
Lactobacillus sakei subsp. sakei (strain 23K) Eukaryota 1872 85 69
Lactobacillus salivarius (strain CECT 5713) Eukaryota 1533 90 68
Lactobacillus salivarius (strain UCC118) Eukaryota 1998 81 67
Lactobacillus sanfranciscensis (strain TMW 1.1304) Eukaryota 1262 87 71
Lactococcus garvieae (strain ATCC 49156 / DSM 6783 / NCIMB 13208 / YT-3) Eukaryota 1920 83 67
Lactococcus garvieae (strain Lg2) Eukaryota 1938 83 67
Lactococcus lactis subsp. cremoris (strain MG1363) Eukaryota 2383 82 66
Lactococcus lactis subsp. cremoris (strain NZ9000) Eukaryota 2446 81 66
Lactococcus lactis subsp. cremoris (strain SK11) Eukaryota 2442 81 66
Lactococcus lactis subsp. lactis (strain CV56) Eukaryota 2365 82 66
Lactococcus lactis subsp. lactis (strain IL1403) Eukaryota 2225 85 67
Lactococcus lactis subsp. lactis (strain KF147) Eukaryota 2458 84 67
Lactococcus phage c2 Viruses 39 21 22
Lake Victoria marburgvirus (strain Angola/2005) Viruses 7 100 70
Lake Victoria marburgvirus (strain Musoke-80) Viruses 7 100 70
Lake Victoria marburgvirus (strain Ozolin-75) Viruses 7 100 70
Lake Victoria marburgvirus (strain Popp-67) Viruses 7 100 70
Lake Victoria marburgvirus (strain Ravn-87) Viruses 7 100 70
Langat virus (strain TP21) Viruses 1 100 87
Laribacter hongkongensis (strain HLHK9) Eukaryota 3208 79 66
Lassa virus (strain Mouse/Sierra Leone/Josiah/1976) Viruses 4 100 97
Latimeria chalumnae Eukaryota 21809 89 46
Latino virus (isolate Rat/Bolivia/MARU 1924/1965) Viruses 4 100 98
Lawsonia intracellularis (strain PHE/MN1-00) Eukaryota 1338 86 60
Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) Eukaryota 3429 81 57
Legionella longbeachae serogroup 1 (strain NSW150) Eukaryota 3458 72 55
Legionella pneumophila (strain Corby) Eukaryota 3202 74 58
Legionella pneumophila (strain Lens) Eukaryota 2917 78 58
Legionella pneumophila (strain Paris) Eukaryota 3145 77 57
Legionella pneumophila serogroup 1 (strain 2300/99 Alcoy) Eukaryota 3181 74 58
Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) Eukaryota 2926 78 58
Leifsonia xyli subsp. xyli (strain CTCB07) Eukaryota 2001 80 61
Leishmania braziliensis Eukaryota 8102 56 22
Leishmania donovani (strain BPK282A1) Eukaryota 7961 55 22
Leishmania infantum Eukaryota 8049 56 22
Leishmania major Eukaryota 8041 56 22
Leishmania mexicana (strain MHOM/GT/2001/U1103) Eukaryota 7759 56 22
Leishmania RNA virus 1 - 1 (isolate Leishmania guyanensis) Viruses 3 67 71
Leptosphaeria maculans (strain JN3 / isolate v23.1.3 / race Av1-4-5-6-7-8) Eukaryota 12468 54 35
Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) Eukaryota 3595 75 52
Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) Eukaryota 3723 73 52
Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) Eukaryota 2829 76 53
Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) Eukaryota 2872 76 53
Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) Eukaryota 3644 69 51
Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) Eukaryota 3667 70 51
Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain IPAV) Eukaryota 3669 70 51
Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) Eukaryota 4343 87 62
Leptotrichia buccalis (strain ATCC 14201 / DSM 1135 / JCM 12969 / NCTC 10249) Eukaryota 2218 77 60
Lettuce big-vein associated virus (isolate Japan/Kagawa) Viruses 6 17 35
Lettuce infectious yellows virus (isolate United States/92) Viruses 9 78 50
Lettuce mosaic virus (strain 0 / isolate French) Viruses 2 50 79
Lettuce mosaic virus (strain E) Viruses 2 50 79
Lettuce necrotic yellows virus (isolate 318) Viruses 6 33 37
Leuconostoc citreum (strain KM20) Eukaryota 1812 86 69
Leuconostoc gasicomitatum (strain DSM 15947 / CECT 5767 / JCM 12535 / LMG 18811 / TB1-10) Eukaryota 1902 83 68
Leuconostoc kimchii (strain IMSNU 11154 / KCTC 2386 / IH25) Eukaryota 2128 83 68
Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) Eukaryota 2002 84 69
Leuconostoc sp. (strain C2) Eukaryota 1853 85 70
Liberibacter asiaticus (strain psy62) Eukaryota 1102 78 65
Liberibacter solanacearum (strain CLso-ZC1) Eukaryota 1164 75 63
Listeria innocua serovar 6a (strain CLIP 11262) Eukaryota 3017 87 67
Listeria ivanovii (strain ATCC BAA-678 / PAM 55) Eukaryota 2649 90 70
Listeria monocytogenes serotype 1/2a (strain 08-5578) Eukaryota 3081 86 68
Listeria monocytogenes serotype 1/2a (strain 08-5923) Eukaryota 2960 87 69
Listeria monocytogenes serotype 4a (strain HCC23) Eukaryota 2971 85 67
Listeria monocytogenes serotype 4a (strain M7) Eukaryota 2974 85 67
Listeria monocytogenes serotype 4b (strain Clip81459) Eukaryota 2765 90 69
Listeria monocytogenes serotype 4b (strain F2365) Eukaryota 2818 87 69
Listeria monocytogenes serotype 4c (strain L99) Eukaryota 2923 87 68
Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) Eukaryota 2842 90 69
Listeria seeligeri serovar 1/2b (strain ATCC 35967 / DSM 20751 / CIP 100100 / SLCC 3954) Eukaryota 2710 88 68
Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) Eukaryota 2768 87 68
Loa loa Eukaryota 16271 50 36
Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) Eukaryota 5779 78 40
Lolium latent virus (isolate Lolium/USA/US1/-) Viruses 6 83 60
Louping ill virus Viruses 1 100 87
Loxodonta africana Eukaryota 25624 92 46
Lymantria dispar cypovirus 1 (isolate Rao) Viruses 10 10 3
Lymphocystis disease virus 1 (isolate Darai) Viruses 1 100 48
Lymphocytic choriomeningitis virus (strain Armstrong) Viruses 4 100 98
Lysinibacillus sphaericus (strain C3-41) Eukaryota 4750 77 63
Macaca fascicularis Eukaryota 17394 88 46
Macaca mulatta Eukaryota 35613 85 45
Machupo virus Viruses 4 100 98
Macrococcus caseolyticus (strain JCSC5402) Eukaryota 2059 89 69
Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) Eukaryota 13292 59 37
Magnetococcus sp. (strain MC-1) Eukaryota 3594 79 53
Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) Eukaryota 4513 77 57
Mahella australiensis (strain DSM 15567 / CIP 107919 / 50-1 BON) Eukaryota 2858 83 62
Maize chlorotic mottle virus (isolate United States/Kansas/1987) Viruses 4 50 39
Maize mosaic virus (isolate Maize/United States/Reed/2005) Viruses 6 17 34
Maize rayado fino virus (isolate Costa Rica/Guapiles) Viruses 2 50 42
Maize streak virus genotype A (isolate Kenya) Viruses 4 100 78
Maize streak virus genotype A (isolate Nigeria) Viruses 4 100 78
Maize streak virus genotype A (isolate South Africa) Viruses 4 100 78
Maize streak virus genotype B (isolate Tas) Viruses 4 100 79
Maize streak virus genotype C (isolate Set) Viruses 4 100 78
Maize streak virus genotype D (isolate Raw) Viruses 4 100 78
Maize streak virus genotype E (isolate Pat) Viruses 4 100 79
Malassezia globosa (strain ATCC MYA-4612 / CBS 7966) Eukaryota 4274 82 43
Mannheimia succiniciproducens (strain MBEL55E) Eukaryota 2363 83 71
Maribacter sp. (strain HTCC2170 / KCCM 42371) Eukaryota 3411 80 57
Maricaulis maris (strain MCS10) Eukaryota 3060 84 60
Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) Eukaryota 2194 86 66
Marinitoga piezophila (strain DSM 14283 / JCM 11233 / KA3) Eukaryota 2044 83 59
Marinobacter adhaerens (strain HP15) Eukaryota 4407 81 63
Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) Eukaryota 4170 84 62
Marinomonas mediterranea (strain ATCC 700492 / JCM 21426 / NBRC 103028 / MMB-1) Eukaryota 4118 86 64
Marinomonas posidonica (strain CECT 7376 / NCIMB 14433 / IVIA-Po-181) Eukaryota 3489 91 68
Marinomonas sp. (strain MWYL1) Eukaryota 4416 91 67
Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43) Eukaryota 3748 76 52
Mason-Pfizer monkey virus Viruses 4 100 72
Mastomys natalensis papillomavirus (isolate African multimammate rat) Viruses 6 100 84
Mayaro virus (strain Brazil) Viruses 2 100 68
Measles virus (strain Edmonston) Viruses 7 100 86
Measles virus (strain Edmonston-AIK-C vaccine) Viruses 7 100 86
Measles virus (strain Ichinose-B95a) Viruses 8 100 87
Meiothermus ruber (strain ATCC 35948 / DSM 1279 / VKM B-1258 / 21) Eukaryota 2993 82 63
Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) Eukaryota 3002 81 62
Melampsora larici-populina (strain 98AG31 / pathotype 3-4-7) Eukaryota 16236 36 23
Meleagris gallopavo Eukaryota 16533 90 47
Melissococcus plutonius (strain ATCC 35311 / CIP 104052 / LMG 20360 / NCIMB 702443) Eukaryota 1876 82 67
Melissococcus plutonius (strain DAT561) Eukaryota 1515 88 69
Mengo encephalomyocarditis virus Viruses 1 100 54
Mesoplasma florum (strain ATCC 33453 / NBRC 100688 / NCTC 11704 / L1) Eukaryota 683 81 57
Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) Eukaryota 6260 85 64
Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) Eukaryota 6496 84 64
Mesorhizobium sp. (strain BNC1) Eukaryota 4530 86 64
Metallosphaera cuprina (strain Ar-4) Archaea 2029 71 60
Metallosphaera sedula (strain ATCC 51363 / DSM 5348) Archaea 2256 75 59
Metarhizium acridum (strain CQMa 102) Eukaryota 9830 74 41
Metarhizium robertsii (strain ARSEF 23 / ATCC MYA-3075) Eukaryota 10581 75 42
Methanobacterium sp. (strain AL-21) Archaea 2493 79 62
Methanobacterium sp. (strain SWAN-1) Archaea 2394 78 63
Methanobrevibacter ruminantium (strain ATCC 35063 / DSM 1093 / JCM 13430 / M1) Archaea 2209 75 49
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) Archaea 1783 79 58
Methanocaldococcus fervens (strain DSM 4213 / JCM 157852 / AG86) Archaea 1546 85 67
Methanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME) Archaea 1439 89 69
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) Archaea 1787 82 63
Methanocaldococcus sp. (strain FS406-22) Archaea 1803 81 64
Methanocaldococcus vulcanius (strain ATCC 700851 / DSM 12094 / M7) Archaea 1725 81 63
Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) Archaea 2448 77 61
Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) Archaea 2993 75 58
Methanococcoides burtonii (strain DSM 6242) Archaea 2242 80 61
Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) Archaea 1490 87 67
Methanococcus maripaludis (strain C5 / ATCC BAA-1333) Archaea 1821 83 65
Methanococcus maripaludis (strain C6 / ATCC BAA-1332) Archaea 1825 81 65
Methanococcus maripaludis (strain C7 / ATCC BAA-1331) Archaea 1786 83 65
Methanococcus maripaludis (strain S2 / LL) Archaea 1722 86 67
Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) Archaea 1661 87 66
Methanococcus voltae (strain ATCC BAA-1334 / A3) Archaea 1658 81 61
Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) Archaea 1739 83 62
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) Archaea 2476 78 61
Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) Archaea 2250 79 62
Methanohalophilus mahii (strain ATCC 35705 / DSM 5219 / SLP) Archaea 1986 84 65
Methanoplanus petrolearius (strain DSM 11571 / OCM 486 / SEBR 4847) Archaea 2779 75 56
Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) Archaea 1687 74 55
Methanoregula boonei (strain 6A8) Archaea 2450 78 60
Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) Archaea 2791 76 58
Methanosaeta harundinacea (strain 6Ac) Archaea 2358 78 58
Methanosaeta thermophila (strain DSM 6194 / PT) Archaea 1673 84 64
Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) Archaea 1972 83 63
Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) Archaea 4468 74 58
Methanosarcina barkeri (strain Fusaro / DSM 804) Archaea 3616 79 60
Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) Archaea 3303 79 59
Methanosphaera stadtmanae (strain DSM 3091) Archaea 1533 81 57
Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) Archaea 2655 78 60
Methanospirillum hungatei (strain JF-1 / DSM 864) Archaea 3087 80 57
Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg) Archaea 1756 84 66
Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) Archaea 1869 82 65
Methanothermococcus okinawensis (strain DSM 14208 / JCM 11175 / IH1) Archaea 1583 84 65
Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) Archaea 1283 89 70
Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) Archaea 1753 85 66
Methylacidiphilum infernorum (isolate V4) Eukaryota 2470 64 57
Methylibium petroleiphilum (strain PM1) Eukaryota 4359 81 61
Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) Eukaryota 2609 88 65
Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) Eukaryota 5491 76 59
Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) Eukaryota 6233 68 54
Methylobacterium extorquens (strain DSM 5838 / DM4) Eukaryota 5705 74 59
Methylobacterium extorquens (strain PA1) Eukaryota 4822 80 60
Methylobacterium nodulans (strain ORS2060 / LMG 21967) Eukaryota 8128 70 58
Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) Eukaryota 5325 77 59
Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) Eukaryota 6388 76 60
Methylobacterium sp. (strain 4-46) Eukaryota 6647 77 60
Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) Eukaryota 3816 81 61
Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) Eukaryota 2925 83 62
Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) Eukaryota 4041 80 61
Methylomonas methanica (strain MC09) Eukaryota 4435 79 58
Methylotenera mobilis (strain JLW8 / ATCC BAA-1282 / DSM 17540) Eukaryota 2334 90 67
Methylotenera sp. (strain 301) Eukaryota 2752 87 64
Methylovorus sp. (strain MP688) Eukaryota 2709 85 66
Methylovorus sp. (strain SIP3-4) Eukaryota 2907 84 63
Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) Eukaryota 5918 82 46
Micavibrio aeruginosavorus (strain ARL-13) Eukaryota 2432 69 54
Microbacterium testaceum (strain StLB037) Eukaryota 3671 81 59
Micrococcus luteus (strain ATCC 4698 / DSM 20030 / JCM 1464 / NBRC 3333 / NCIMB 9278 / NCTC 2665 / VKM Ac-2230) Eukaryota 2207 85 62
Microcystis aeruginosa (strain NIES-843) Eukaryota 5981 64 57
Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) Eukaryota 5303 78 56
Micromonas pusilla (strain CCMP1545) Eukaryota 10249 66 34
Micromonas pusilla reovirus (isolate Netherlands/2005) Viruses 11 9 1
Micromonas sp. (strain RCC299 / NOUM17) Eukaryota 10082 71 35
Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 / NBRC 16125 / INA 9442) Eukaryota 6204 79 55
Micromonospora sp. (strain L5) Eukaryota 6129 80 56
Microplitis demolitor bracovirus (isolate Webb) Viruses 53 58 43
Midichloria mitochondrii (strain IricVA) Eukaryota 1181 68 64
Milk vetch dwarf virus (isolate N) Viruses 12 58 50
Mink astrovirus 1 Viruses 3 100 44
Mink enteritis virus (strain Abashiri) Viruses 2 100 78
Mirafiori lettuce virus (isolate Lettuce/Netherlands/LS301-O) Viruses 7 29 23
Miscanthus streak virus (isolate 91) Viruses 5 60 64
Mixia osmundae (strain CBS 9802 / IAM 14324 / JCM 22182 / KY 12970) Eukaryota 6724 71 37
Mobiluncus curtisii (strain ATCC 43063 / DSM 2711 / V125) Eukaryota 1904 80 58
Mokola virus Viruses 5 100 94
Molluscum contagiosum virus subtype 1 Viruses 163 67 54
Moloney murine leukemia virus (isolate Shinnick) Viruses 3 100 69
Moniliophthora perniciosa (strain FA553 / isolate CP02) Eukaryota 13649 44 32
Monodelphis domestica Eukaryota 32443 91 50
Monosiga brevicollis Eukaryota 9188 72 32
Moorella thermoacetica (strain ATCC 39073) Eukaryota 2451 89 66
Moranella endobia (strain PCIT) Eukaryota 405 100 78
Moraxella catarrhalis (strain RH4) Eukaryota 1881 75 66
Mosquito cell fusing agent Viruses 1 100 52
Mouse mammary tumor virus (strain C3H) Viruses 5 100 62
Mumps virus (strain Miyahara vaccine) Viruses 8 100 76
Mungbean yellow mosaic virus (strain Vigna) Viruses 6 100 79
Muricauda ruestringensis (strain DSM 13258 / LMG 19739 / B1) Eukaryota 3425 80 58
Murid herpesvirus 1 (strain Smith) Viruses 15 93 57
Murine coronavirus (strain A59) Viruses 11 100 58
Murine coronavirus (strain JHM) Viruses 11 100 58
Murine minute virus (strain MVM prototype) Viruses 7 57 77
Murine minute virus (strain MVMi) Viruses 2 100 78
Murine polyomavirus (strain 3) Viruses 5 100 66
Murine polyomavirus (strain A2) Viruses 5 100 66
Murine polyomavirus (strain Crawford small-plaque) Viruses 5 100 66
Murray valley encephalitis virus (strain MVE-1-51) Viruses 1 100 87
Mus musculus Eukaryota 51523 81 45
Mushroom bacilliform virus (isolate Australia/AUS LF-1) Viruses 4 50 31
Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) Eukaryota 4940 81 60
Mycobacterium africanum (strain GM041182) Eukaryota 3813 85 61
Mycobacterium avium (strain 104) Eukaryota 5039 81 62
Mycobacterium bovis Eukaryota 3911 85 61
Mycobacterium bovis (strain BCG / Pasteur 1173P2) Eukaryota 3891 85 60
Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) Eukaryota 3906 85 61
Mycobacterium canettii (strain CIPT 140010059) Eukaryota 3837 86 61
Mycobacterium gilvum (strain PYR-GCK) Eukaryota 5499 83 59
Mycobacterium intracellulare (strain ATCC 13950 / DSM 43223 / JCM 6384 / NCTC 13025 / 3600) Eukaryota 5131 83 62
Mycobacterium leprae Eukaryota 1603 85 65
Mycobacterium leprae (strain Br4923) Eukaryota 1599 85 65
Mycobacterium marinum (strain ATCC BAA-535 / M) Eukaryota 5418 84 58
Mycobacterium paratuberculosis Eukaryota 4315 87 61
Mycobacterium phage Bxz1 Viruses 225 14 13
Mycobacterium phage L5 Viruses 85 29 28
Mycobacterium rhodesiae (strain NBB3) Eukaryota 6105 83 61
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) Eukaryota 6601 83 63
Mycobacterium sp. (strain JDM601) Eukaryota 4332 82 60
Mycobacterium sp. (strain JLS) Eukaryota 5695 85 61
Mycobacterium sp. (strain KMS) Eukaryota 5893 82 59
Mycobacterium sp. (strain MCS) Eukaryota 5589 83 60
Mycobacterium sp. (strain Spyr1) Eukaryota 5224 83 60
Mycobacterium tuberculosis Eukaryota 5221 78 57
Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) Eukaryota 3990 84 60
Mycobacterium tuberculosis (strain ATCC 35801 / TMC 107 / Erdman) Eukaryota 4221 79 61
Mycobacterium tuberculosis (strain CCDC5079) Eukaryota 3621 88 61
Mycobacterium tuberculosis (strain CCDC5180) Eukaryota 3556 88 62
Mycobacterium tuberculosis (strain F11) Eukaryota 3904 86 60
Mycobacterium tuberculosis (strain KZN 1435 / MDR) Eukaryota 4024 84 60
Mycobacterium ulcerans (strain Agy99) Eukaryota 4206 85 62
Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) Eukaryota 5902 83 59
Mycoplasma agalactiae (strain 5632) Eukaryota 754 72 49
Mycoplasma agalactiae (strain PG2) Eukaryota 725 70 51
Mycoplasma arthritidis (strain 158L3-1) Eukaryota 631 70 45
Mycoplasma bovis (strain ATCC 25523 / PG45) Eukaryota 742 75 52
Mycoplasma bovis (strain Hubei-1) Eukaryota 791 72 51
Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) Eukaryota 812 76 52
Mycoplasma conjunctivae (strain ATCC 25834 / HRC/581 / NCTC 10147) Eukaryota 695 67 46
Mycoplasma crocodyli (strain ATCC 51981 / MP145) Eukaryota 689 75 52
Mycoplasma fermentans (strain JER) Eukaryota 794 73 50
Mycoplasma fermentans (strain M64) Eukaryota 962 63 48
Mycoplasma gallisepticum (strain F) Eukaryota 740 72 49
Mycoplasma gallisepticum (strain R(high / passage 156)) Eukaryota 763 73 51
Mycoplasma gallisepticum (strain R(low / passage 15 / clone 2)) Eukaryota 761 74 50
Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) Eukaryota 483 85 58
Mycoplasma haemocanis (strain Illinois) Eukaryota 1156 25 26
Mycoplasma haemofelis (strain Langford 1) Eukaryota 1545 20 21
Mycoplasma haemofelis (strain Ohio2) Eukaryota 1524 19 21
Mycoplasma hominis (strain ATCC 23114 / NBRC 14850 / NCTC 10111 / PG21) Eukaryota 529 75 54
Mycoplasma hyopneumoniae (strain 168) Eukaryota 686 67 46
Mycoplasma hyopneumoniae (strain 232) Eukaryota 691 66 44
Mycoplasma hyopneumoniae (strain 7448) Eukaryota 693 67 45
Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) Eukaryota 670 69 46
Mycoplasma hyorhinis (strain HUB-1) Eukaryota 658 78 52
Mycoplasma hyorhinis (strain MCLD) Eukaryota 777 66 51
Mycoplasma leachii (strain 99/014/6) Eukaryota 902 72 53
Mycoplasma leachii (strain DSM 21131 / NCTC 10133 / N29 / PG50) Eukaryota 880 74 53
Mycoplasma mobile (strain ATCC 43663 / 163K / NCTC 11711) Eukaryota 628 79 56
Mycoplasma mycoides subsp. mycoides SC (strain Gladysdale) Eukaryota 1056 72 54
Mycoplasma mycoides subsp. mycoides SC (strain PG1) Eukaryota 978 72 54
Mycoplasma penetrans (strain HF-2) Eukaryota 1028 72 48
Mycoplasma pneumoniae (strain ATCC 15531 / NBRC 14401 / NCTC 10119 / FH) Eukaryota 629 78 57
Mycoplasma pneumoniae (strain ATCC 29342 / M129) Eukaryota 687 80 54
Mycoplasma pulmonis (strain UAB CTIP) Eukaryota 777 71 49
Mycoplasma putrefaciens (strain ATCC 15718 / NCTC 10155 / C30 KS-1 / KS-1) Eukaryota 650 78 56
Mycoplasma suis (strain Illinois) Eukaryota 844 32 31
Mycoplasma suis (strain KI_3806) Eukaryota 795 32 32
Mycoplasma synoviae (strain 53) Eukaryota 675 71 50
Mycosphaerella graminicola (strain CBS 115943 / IPO323) Eukaryota 10971 66 40
Myotis lucifugus Eukaryota 20650 91 46
Myxococcus fulvus (strain ATCC BAA-855 / HW-1) Eukaryota 7227 71 49
Myxococcus xanthus (strain DK 1622) Eukaryota 7314 71 48
Myxoma virus (strain Lausanne) Viruses 158 91 76
Naegleria gruberi Eukaryota 15636 62 29
Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) Eukaryota 5123 80 57
Nanoarchaeum equitans (strain Kin4-M) Archaea 536 68 50
Narcissus mosaic virus Viruses 6 83 55
Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) Eukaryota 2847 83 64
Natrialba magadii (strain ATCC 43099 / DSM 3394 / NCIMB 2190 / MS3) Archaea 4211 66 52
Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) Archaea 2784 72 57
Naumovozyma castellii (strain ATCC 76901 / CBS 4309 / NBRC 1992 / NRRL Y-12630) Eukaryota 5565 83 44
Naumovozyma dairenensis (strain ATCC 10597 / BCRC 20456 / CBS 421 / NBRC 0211 / NRRL Y-12639) Eukaryota 5523 83 42
Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) Eukaryota 1729 84 65
Nectria haematococca (strain 77-13-4 / ATCC MYA-4622 / FGSC 9596 / MPVI) Eukaryota 15709 73 42
Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) Eukaryota 1961 78 66
Neisseria gonorrhoeae (strain NCCP11945) Eukaryota 2594 66 63
Neisseria lactamica (strain 020-06) Eukaryota 1961 82 65
Neisseria meningitidis (strain alpha14) Eukaryota 1863 83 68
Neisseria meningitidis serogroup A (strain WUE 2594) Eukaryota 1924 83 68
Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) Eukaryota 1887 84 68
Neisseria meningitidis serogroup B (strain alpha710) Eukaryota 1994 81 67
Neisseria meningitidis serogroup B (strain G2136) Eukaryota 1895 84 69
Neisseria meningitidis serogroup B (strain M01-240149) Eukaryota 1913 84 68
Neisseria meningitidis serogroup B (strain M01-240355) Eukaryota 1946 84 67
Neisseria meningitidis serogroup B (strain M04-240196) Eukaryota 1910 84 68
Neisseria meningitidis serogroup B (strain MC58) Eukaryota 2000 79 67
Neisseria meningitidis serogroup B (strain NZ-05/33) Eukaryota 1909 84 68
Neisseria meningitidis serogroup B / serotype 15 (strain H44/76) Eukaryota 1931 83 68
Neisseria meningitidis serogroup C (strain 053442) Eukaryota 1997 80 68
Neisseria meningitidis serogroup C (strain 8013) Eukaryota 1894 83 68
Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) Eukaryota 1865 85 68
Nematocida sp. 1 (strain ERTm2) Eukaryota 2769 42 25
Nematostella vectensis Eukaryota 24416 71 46
Neodiprion lecontei nucleopolyhedrovirus (strain Canada) Viruses 89 45 47
Neorickettsia risticii (strain Illinois) Eukaryota 897 70 61
Neorickettsia sennetsu (strain Miyayama) Eukaryota 932 68 62
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) Eukaryota 10392 77 44
Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) Eukaryota 9629 77 43
Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) Eukaryota 9923 75 43
Neospora caninum (strain Liverpool) Eukaryota 7111 59 17
Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) Eukaryota 9840 63 35
Neurospora tetrasperma (strain FGSC 2508 / ATCC MYA-4615 / P0657) Eukaryota 10378 59 34
Neurospora tetrasperma (strain FGSC 2509 / P0656) Eukaryota 11174 55 33
Newcastle disease virus (strain Chicken/United States/B1/48) Viruses 8 100 75
Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) Eukaryota 7171 74 52
Nipah virus Viruses 9 89 82
Nitratifractor salsuginis (strain DSM 16511 / JCM 12458 / E9I37-1) Eukaryota 2076 81 61
Nitratiruptor sp. (strain SB155-2) Eukaryota 1843 86 64
Nitrobacter hamburgensis (strain X14 / DSM 10229) Eukaryota 4243 77 57
Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) Eukaryota 2980 82 61
Nitrosococcus halophilus (strain Nc4) Eukaryota 3702 80 62
Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) Eukaryota 2952 84 62
Nitrosococcus watsoni (strain C-113) Eukaryota 2880 83 63
Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) Eukaryota 2375 88 64
Nitrosomonas eutropha (strain C91) Eukaryota 2473 86 65
Nitrosomonas sp. (strain Is79A3) Eukaryota 3273 77 58
Nitrosopumilus maritimus (strain SCM1) Archaea 1795 69 55
Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) Eukaryota 2732 85 61
Nocardia cyriacigeorgica (strain GUH-2) Eukaryota 5472 79 57
Nocardia farcinica (strain IFM 10152) Eukaryota 5941 77 57
Nocardioides sp. (strain BAA-499 / JS614) Eukaryota 4888 82 59
Nocardiopsis dassonvillei (strain ATCC 23218 / DSM 43111 / IMRU 509 / JCM 7437 / NCTC 10488) Eukaryota 5497 81 56
Nodamura virus (strain Mag115) Viruses 3 67 36
Nomascus leucogenys Eukaryota 23146 88 44
Norwalk virus (strain GI/Human/United States/Norwalk/1968) Viruses 3 100 88
Nosema ceranae (strain BRL01) Eukaryota 2060 52 35
Nostoc azollae (strain 0708) Eukaryota 3646 66 58
Nostoc punctiforme (strain ATCC 29133 / PCC 73102) Eukaryota 6573 75 56
Nostoc sp. (strain PCC 7120 / UTEX 2576) Eukaryota 6070 74 55
Novosphingobium aromaticivorans (strain DSM 12444) Eukaryota 3917 84 61
Nudaurelia capensis beta virus (isolate Pine emperor moth/South Africa) Viruses 2 100 61
O'nyong-nyong virus (strain Gulu) Viruses 2 100 67
O'nyong-nyong virus (strain Igbo Ora) Viruses 2 100 67
O'nyong-nyong virus (strain SG650) Viruses 2 100 67
Oat chlorotic stunt virus (isolate United Kingdom) Viruses 3 67 55
Oceanimonas sp. (strain GK1) Eukaryota 3190 93 71
Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 / 506) Eukaryota 2372 81 61
Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) Eukaryota 3490 88 70
Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) Eukaryota 4757 87 65
Odontoglossum ringspot virus (isolate Korean Cy) Viruses 4 100 67
Odontoglossum ringspot virus (isolate Singapore 1) Viruses 4 100 66
Odoribacter splanchnicus (strain ATCC 29572 / DSM 20712 / JCM 15291 / NCTC 10825 / 1651/6) Eukaryota 3479 77 54
Oenococcus oeni (strain ATCC BAA-331 / PSU-1) Eukaryota 1682 83 70
Oikopleura dioica Eukaryota 17050 57 33
Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) Eukaryota 4642 78 62
Oligotropha carboxidovorans (strain OM4) Eukaryota 3561 84 63
Olive latent virus 2 (isolate Italy) Viruses 4 75 58
Oliveros virus (isolate Mouse/Argentina/RIID 3229/1990) Viruses 4 100 97
Olsenella uli (strain ATCC 49627 / DSM 7084 / CIP 109912 / JCM 12494 / VPI D76D-27C) Eukaryota 1739 86 63
Onion yellows phytoplasma (strain OY-M) Eukaryota 729 71 54
Ononis yellow mosaic virus Viruses 3 100 59
Opitutus terrae (strain DSM 11246 / PB90-1) Eukaryota 4588 78 52
Orangutan hepatitis B virus (isolate Somad) Viruses 4 100 96
Orf virus (strain Goat/Texas/SA00/2000) Viruses 129 83 70
Orgyia pseudotsugata multicapsid polyhedrosis virus Viruses 152 74 64
Orientia tsutsugamushi (strain Boryong) Eukaryota 966 77 58
Orientia tsutsugamushi (strain Ikeda) Eukaryota 1648 77 59
Ornithorhynchus anatinus Eukaryota 26782 85 48
Oryctolagus cuniculus Eukaryota 24386 91 47
Oryza glaberrima Eukaryota 31805 66 42
Oryza sativa endornavirus (isolate Japan/1995) Viruses 1 100 15
Oryza sativa subsp. japonica Eukaryota 63553 55 36
Oryzias latipes Eukaryota 24625 88 50
Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) Eukaryota 4593 70 55
Ostreid herpesvirus 1 (isolate France) Viruses 116 18 9
Ostreococcus lucimarinus (strain CCE9901) Eukaryota 7402 75 44
Ostreococcus tauri Eukaryota 7969 64 37
Otolemur garnettii Eukaryota 19932 92 46
Ovine adenovirus D serotype 7 (isolate OAV287) Viruses 30 60 58
Ovine astrovirus 1 Viruses 3 100 44
Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL B-23963) Eukaryota 3471 74 50
Paenibacillus mucilaginosus (strain KNP414) Eukaryota 7781 75 60
Paenibacillus polymyxa (strain E681) Eukaryota 4787 83 62
Paenibacillus polymyxa (strain SC2) Eukaryota 6024 71 60
Paenibacillus sp. (strain JDR-2) Eukaryota 6210 86 60
Paenibacillus terrae (strain HPL-003) Eukaryota 5517 81 62
Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) Eukaryota 3020 80 57
Pan troglodytes Eukaryota 20128 89 46
Panicum mosaic virus (strain United States/Kansas 109S) Viruses 5 60 51
Panicum streak virus (isolate Kenya) Viruses 4 100 74
Pantoea ananatis (strain AJ13355) Eukaryota 3782 94 71
Pantoea ananatis (strain LMG 20103) Eukaryota 4240 91 70
Pantoea sp. (strain At-9b) Eukaryota 5760 90 70
Pantoea vagans (strain C9-1) Eukaryota 4590 87 71
Papaya mosaic potexvirus Viruses 7 71 57
Papaya ringspot virus (strain P / mutant HA) Viruses 2 50 78
Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) Eukaryota 3830 82 58
Parachlamydia acanthamoebae (strain UV7) Eukaryota 2784 62 46
Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) Eukaryota 9114 58 34
Paracoccidioides brasiliensis (strain Pb03) Eukaryota 7872 67 37
Paracoccidioides brasiliensis (strain Pb18) Eukaryota 8748 61 36
Paracoccus denitrificans (strain Pd 1222) Eukaryota 5019 85 65
Paramecium bursaria Chlorella virus 1 Viruses 793 19 21
Paramecium tetraurelia Eukaryota 39461 49 25
Parana virus (isolate Rat/Paraguay/12056/1965) Viruses 4 100 98
Parsnip yellow fleck virus (isolate P-121) Viruses 1 100 25
Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) Eukaryota 3580 88 65
Parvovirus LuIII Viruses 2 100 78
Parvularcula bermudensis (strain ATCC BAA-594 / HTCC2503 / KCTC 12087) Eukaryota 2687 83 61
Pasteurella multocida (strain HN06) Eukaryota 2233 88 70
Pasteurella multocida (strain Pm70) Eukaryota 2012 93 71
Pea enation mosaic virus-1 (strain WSG) Viruses 5 80 46
Pea seed-borne mosaic virus (strain DPD1) Viruses 2 50 80
Peanut clump virus (isolate 87/TGTA2) Viruses 7 86 67
Peanut mottle virus (strain M) Viruses 2 50 82
Pectobacterium carotovorum subsp. carotovorum (strain PC1) Eukaryota 4245 91 70
Pectobacterium wasabiae (strain WPP163) Eukaryota 4431 87 68
Pediculus humanus subsp. corporis n/a 10763 76 39
Pediococcus claussenii (strain ATCC BAA-344 / DSM 14800 / JCM 18046 / KCTC 3811 / P06) Eukaryota 1877 86 68
Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) Eukaryota 1755 86 69
Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) Eukaryota 4249 81 57
Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) Eukaryota 3780 80 57
Pelagibacter sp. (strain IMCC9063) Eukaryota 1447 85 70
Pelagibacter ubique (strain HTCC1062) Eukaryota 1354 90 70
Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) Eukaryota 3874 85 66
Pelargonium zonate spot virus (isolate Tomato/Italy/1982) Viruses 4 75 72
Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) Eukaryota 3341 82 63
Pelobacter propionicus (strain DSM 2379) Eukaryota 3694 82 60
Pelodictyon luteolum (strain DSM 273) Eukaryota 2074 88 64
Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) Eukaryota 2685 82 62
Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) Eukaryota 2884 82 63
Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) Eukaryota 12773 65 41
Penicillium chrysogenum virus (isolate Caston/2003) Viruses 4 25 12
Penicillium marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) Eukaryota 10422 78 44
Pepper huasteco yellow vein virus Viruses 5 100 82
Pepper mild mottle virus (strain Japan) Viruses 3 100 71
Pepper mild mottle virus (strain Spain) Viruses 3 100 71
Pepper mottle virus (isolate California) Viruses 2 50 83
Periplaneta fuliginosa densovirus (isolate Guo/2000) Viruses 7 43 34
Perkinsus marinus (strain ATCC 50983 / TXsc) Eukaryota 23115 51 33
Petrotoga mobilis (strain DSM 10674 / SJ95) Eukaryota 1890 87 65
Petunia vein clearing virus (isolate Hohn) Viruses 1 100 16
Petunia vein clearing virus (isolate Shepherd) Viruses 1 100 16
Phaeodactylum tricornutum (strain CCAP 1055/1) Eukaryota 10465 66 33
Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) Eukaryota 15998 52 35
Phenylobacterium zucineum (strain HLK1) Eukaryota 3838 90 63
Phocoena spinipinnis papillomavirus (isolate Burmeister's porpoise/Peru/PsPV1) Viruses 8 63 79
Photobacterium profundum Eukaryota 5326 84 64
Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) Eukaryota 4345 80 62
Photorhabdus luminescens subsp. laumondii (strain TT01) Eukaryota 4555 81 62
Physcomitrella patens subsp. patens n/a 34826 54 33
Phytophthora infestans (strain T30-4) Eukaryota 17609 56 33
Phytophthora ramorum Eukaryota 15347 66 35
Phytoplasma mali (strain AT) Eukaryota 447 76 60
Pichia angusta (strain ATCC 26012 / NRRL Y-7560 / DL-1) Eukaryota 4171 88 49
Pichia pastoris (strain ATCC 76273 / CBS 7435 / CECT 11047 / NRRL Y-11430 / Wegner 21-1) n/a 5004 84 46
Pichia pastoris (strain GS115 / ATCC 20864) Eukaryota 5072 84 46
Pichia sorbitophila (strain ATCC MYA-4447 / BCRC 22081 / CBS 7064 / NBRC 10061 / NRRL Y-12695) Eukaryota 8851 81 44
Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828) Archaea 1535 82 65
Pigeon circovirus Viruses 5 40 45
Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) Eukaryota 4711 70 46
Piriformospora indica (strain DSM 11827) Eukaryota 11780 57 32
Pirital virus (isolate Rat/Venezuela/VAV-488/1995) Viruses 4 100 98
Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) Eukaryota 4710 72 50
Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) Eukaryota 4258 68 47
Plantago asiatica mosaic potexvirus Viruses 5 100 65
Plasmodium berghei (strain Anka) Eukaryota 11655 30 25
Plasmodium chabaudi Eukaryota 14613 26 24
Plasmodium falciparum (isolate 3D7) Eukaryota 5354 62 22
Plasmodium knowlesi (strain H) Eukaryota 5100 63 23
Plasmodium vivax (strain Salvador I) Eukaryota 5389 63 22
Plasmodium yoelii yoelii Eukaryota 7756 48 26
Plum pox potyvirus (isolate NAT) Viruses 2 50 81
Plum pox potyvirus (strain D) Viruses 2 50 80
Plum pox potyvirus (strain Rankovic) Viruses 1 100 83
Plum pox potyvirus (strain SK 68) Viruses 2 50 80
Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) Eukaryota 10526 68 37
Poinsettia latent virus (isolate Euphorbia pulcherrima/Germany/Siepen/2005) Viruses 4 100 49
Polaromonas naphthalenivorans (strain CJ2) Eukaryota 4879 82 61
Polaromonas sp. (strain JS666 / ATCC BAA-500) Eukaryota 5437 85 65
Poliovirus type 1 (strain Mahoney) Viruses 1 100 74
Poliovirus type 1 (strain Sabin) Viruses 1 100 74
Poliovirus type 2 (strain Lansing) Viruses 1 100 74
Poliovirus type 2 (strain W-2) Viruses 1 100 74
Poliovirus type 3 (strain 23127) Viruses 1 100 74
Poliovirus type 3 (strains P3/Leon/37 and P3/Leon 12A[1]B) Viruses 1 100 74
Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) Eukaryota 4354 86 65
Polynucleobacter necessarius subsp. asymbioticus (strain DSM 18221 / CIP 109841 / QLW-P1DMWA-1) Eukaryota 2074 89 68
Polynucleobacter necessarius subsp. necessarius (strain STIR1) Eukaryota 1507 82 69
Polysphondylium pallidum Eukaryota 12351 62 30
Pongo abelii Eukaryota 24719 86 46
Populus trichocarpa Eukaryota 41787 74 48
Porcine circovirus 1 (isolate China) Viruses 2 100 73
Porcine circovirus 2 Viruses 3 100 74
Porcine enterovirus 9 (strain UKG/410/73) Viruses 1 100 74
Porcine epidemic diarrhea virus (strain CV777) Viruses 7 100 52
Porcine hemagglutinating encephalomyelitis virus (strain 67N) Viruses 8 88 82
Porcine hemagglutinating encephalomyelitis virus (strain IAF-404) Viruses 8 88 82
Porcine parvovirus (strain Kresse) Viruses 4 50 65
Porcine parvovirus (strain NADL-2) Viruses 2 100 77
Porcine reproductive and respiratory syndrome virus (isolate Pig/United States/SD 01-08/2001) Viruses 8 100 52
Porcine reproductive and respiratory syndrome virus (strain Lelystad) Viruses 8 100 52
Porcine sapelovirus (strain V13) Viruses 1 100 60
Porcine teschovirus 1 (isolate Pig/United Kingdom/F65/1967) Viruses 1 100 55
Porcine transmissible gastroenteritis coronavirus (strain Purdue) Viruses 9 100 52
Porphyromonas asaccharolytica (strain ATCC 25260 / DSM 20707 / VPI 4198) Eukaryota 1672 81 55
Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) Eukaryota 2021 75 59
Porphyromonas gingivalis (strain ATCC BAA-308 / W83) Eukaryota 1863 79 59
Porphyromonas gingivalis (strain TDC60) Eukaryota 2193 71 59
Postia placenta (strain ATCC 44394 / Madison 698-R) Eukaryota 8983 44 21
Potato leafroll virus (strain Potato/Netherlands/Wageningen/1989) Viruses 8 75 58
Potato leafroll virus (strain Potato/Scotland/strain 1/1984) Viruses 9 78 65
Potato mop-top virus (isolate Potato/Sweden/Sw) Viruses 7 86 57
Potato virus A Viruses 2 50 83
Potato virus M (strain Russian) Viruses 6 100 66
Potato virus X Viruses 5 100 66
Potato virus X (strain CP) Viruses 5 100 65
Potato virus X (strain HB) Viruses 5 100 65
Potato virus X (strain X3) Viruses 5 100 66
Potato virus Y (strain Hungarian) Viruses 2 50 83
Potato virus Y (strain N) Viruses 2 50 83
Potato yellow mosaic virus (isolate Venezuela) Viruses 7 100 88
Pothos latent virus (isolate Pigeonpea/India) Viruses 4 50 54
Prevotella denticola (strain F0289) Eukaryota 2380 74 56
Prevotella melaninogenica (strain ATCC 25845 / DSM 7089 / JCM 6325 / VPI 2381 / B282) Eukaryota 2288 78 56
Prevotella ruminicola (strain ATCC 19189 / JCM 8958 / 23) Eukaryota 2761 82 56
Pristionchus pacificus Eukaryota 29077 46 32
Prochlorococcus marinus (strain AS9601) Eukaryota 1920 74 65
Prochlorococcus marinus (strain MIT 9211) Eukaryota 1854 76 65
Prochlorococcus marinus (strain MIT 9215) Eukaryota 1984 73 65
Prochlorococcus marinus (strain MIT 9301) Eukaryota 1906 74 66
Prochlorococcus marinus (strain MIT 9303) Eukaryota 2984 63 57
Prochlorococcus marinus (strain MIT 9312) Eukaryota 1960 73 64
Prochlorococcus marinus (strain MIT 9313) Eukaryota 2827 62 59
Prochlorococcus marinus (strain MIT 9515) Eukaryota 1899 74 65
Prochlorococcus marinus (strain NATL1A) Eukaryota 2172 67 63
Prochlorococcus marinus (strain NATL2A) Eukaryota 2142 67 63
Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) Eukaryota 1881 76 64
Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) Eukaryota 1942 73 65
Propionibacterium acnes (strain KPA171202 / DSM 16379) Eukaryota 2292 82 62
Propionibacterium acnes (strain SK137) Eukaryota 2347 80 62
Propionibacterium freudenreichii subsp. shermanii (strain ATCC 9614 / CIP 103027 / CIRM-BIA1) Eukaryota 2309 81 61
Prosthecochloris aestuarii (strain DSM 271 / SK 413) Eukaryota 2319 83 64
Prosthecochloris vibrioformis (strain DSM 265) Eukaryota 1750 89 65
Proteus mirabilis (strain HI4320) Eukaryota 3661 87 68
Protochlamydia amoebophila (strain UWE25) Eukaryota 2021 66 49
Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) Eukaryota 4271 87 63
Pseudoalteromonas haloplanktis (strain TAC 125) Eukaryota 3482 84 65
Pseudoalteromonas phage PM2 Viruses 21 10 15
Pseudoalteromonas sp. (strain SM9913) Eukaryota 3696 83 65
Pseudogulbenkiania sp. (strain NH8B) Eukaryota 3956 87 68
Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) Eukaryota 5562 90 68
Pseudomonas aeruginosa (strain LESB58) Eukaryota 5907 87 66
Pseudomonas aeruginosa (strain PA7) Eukaryota 6245 83 66
Pseudomonas aeruginosa (strain UCBPP-PA14) Eukaryota 5886 88 67
Pseudomonas brassicacearum (strain NFM421) Eukaryota 6081 86 66
Pseudomonas entomophila (strain L48) Eukaryota 5126 86 65
Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) Eukaryota 6108 87 66
Pseudomonas fluorescens (strain Pf0-1) Eukaryota 5714 87 65
Pseudomonas fluorescens (strain SBW25) Eukaryota 6388 83 64
Pseudomonas fulva (strain 12-X) Eukaryota 4459 89 68
Pseudomonas mendocina (strain NK-01) Eukaryota 4954 89 68
Pseudomonas mendocina (strain ymp) Eukaryota 4562 90 68
Pseudomonas phage LUZ24 Viruses 68 13 10
Pseudomonas phage Pf1 Viruses 14 29 20
Pseudomonas phage Pf3 Viruses 9 33 29
Pseudomonas phage phi6 Viruses 13 23 32
Pseudomonas phage phiKZ Viruses 306 11 8
Pseudomonas putida (strain BIRD-1) Eukaryota 4958 88 67
Pseudomonas putida (strain F1 / ATCC 700007) Eukaryota 5245 88 66
Pseudomonas putida (strain GB-1) Eukaryota 5396 87 66
Pseudomonas putida (strain KT2440) Eukaryota 5313 87 66
Pseudomonas putida (strain W619) Eukaryota 5179 88 67
Pseudomonas stutzeri (strain A1501) Eukaryota 4092 90 67
Pseudomonas stutzeri (strain ATCC 17588 / DSM 5190 / CCUG 11256 / JCM 5965 / LMG 11199 / NCIMB 11358 / Stanier 221) Eukaryota 4180 87 68
Pseudomonas stutzeri (strain DSM 4166 / CMT.9.A) Eukaryota 4258 90 69
Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) Eukaryota 5045 86 65
Pseudomonas syringae pv. syringae (strain B728a) Eukaryota 5071 87 65
Pseudomonas syringae pv. tomato (strain DC3000) Eukaryota 5431 83 64
Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) Eukaryota 6620 82 60
Pseudovibrio sp. (strain FO-BEG1) Eukaryota 5456 82 63
Pseudoxanthomonas spadix (strain BD-a59) Eukaryota 3147 86 65
Pseudoxanthomonas suwonensis (strain 11-1) Eukaryota 3068 85 64
Psittacid herpesvirus 1 (isolate Amazon parrot/-/97-0001/1997) Viruses 71 77 52
Psittacus erithacus timneh papillomavirus (isolate African grey parrot) Viruses 6 67 68
Psychrobacter arcticus (strain DSM 17307 / 273-4) Eukaryota 2099 88 67
Psychrobacter cryohalolentis (strain K5) Eukaryota 2451 89 65
Psychrobacter sp. (strain PRwf-1) Eukaryota 2339 88 64
Psychromonas ingrahamii (strain 37) Eukaryota 3530 88 65
Puccinia graminis f. sp. tritici (strain CRL 75-36-700-3 / race SCCL) Eukaryota 15808 39 24
Puniceispirillum marinum (strain IMCC1322) Eukaryota 2545 86 65
Pusillimonas sp. (strain T7-7) Eukaryota 3750 87 68
Puumala virus (strain Hallnas B1) Viruses 3 100 60
Puumala virus (strain Sotkamo/V-2969/81) Viruses 3 100 60
Pygmy chimpanzee papillomavirus type 1 Viruses 8 100 90
Pyrenophora teres f. teres (strain 0-1) Eukaryota 11705 64 38
Pyrenophora tritici-repentis (strain Pt-1C-BFP) Eukaryota 12062 62 37
Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) Archaea 2590 65 54
Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) Archaea 2296 69 56
Pyrobaculum calidifontis (strain JCM 11548 / VA1) Archaea 2148 70 54
Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) Archaea 1976 70 56
Pyrobaculum oguniense (strain DSM 13380 / JCM 10595 / TE7) Archaea 2798 62 52
Pyrococcus abyssi (strain GE5 / Orsay) Archaea 1786 88 65
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) Archaea 2045 81 63
Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) Archaea 2075 71 58
Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) Archaea 2300 75 59
Pyrococcus sp. (strain NA2) Archaea 1980 81 63
Pyrococcus yayanosii (strain CH1 / JCM 16557) Archaea 1865 78 62
Pyrolobus fumarii (strain DSM 11204 / 1A) Archaea 1967 67 51
Rabbit fibroma virus (strain Kasza) Viruses 153 92 77
Rabbit hemorrhagic disease virus (strain AST89) Viruses 2 100 44
Rabbit hemorrhagic disease virus (strain Rabbit/Germany/FRG/1989) Viruses 2 100 44
Rabbit hemorrhagic disease virus (strain V-351) Viruses 2 100 44
Rabies virus (strain China/DRV) Viruses 5 100 94
Rabies virus (strain China/MRV) Viruses 5 100 94
Rabies virus (strain ERA) Viruses 5 100 94
Rabies virus (strain HEP-Flury) Viruses 5 100 94
Rabies virus (strain India) Viruses 5 100 94
Rabies virus (strain Nishigahara RCEH) Viruses 5 100 94
Rabies virus (strain Pasteur vaccins / PV) Viruses 5 100 94
Rabies virus (strain PM1503/AVO1) Viruses 5 100 94
Rabies virus (strain SAD B19) Viruses 5 100 94
Rabies virus (strain silver-haired bat-associated) Viruses 5 100 94
Rachiplusia ou multiple nucleopolyhedrovirus (strain R1) Viruses 149 77 62
Radiation murine leukemia virus Viruses 3 100 66
Rahnella aquatilis (strain ATCC 33071 / DSM 4594 / JCM 1683 / NBRC 105701 / NCIMB 13365 / CIP 78.65) Eukaryota 4841 90 70
Rahnella sp. (strain Y9602) Eukaryota 5099 90 70
Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) Eukaryota 6361 81 64
Ralstonia pickettii (strain 12D) Eukaryota 5315 79 62
Ralstonia pickettii (strain 12J) Eukaryota 4890 84 65
Ralstonia solanacearum (strain GMI1000) Eukaryota 5022 82 61
Ralstonia solanacearum (strain Po82) Eukaryota 4959 78 59
Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) Eukaryota 3880 87 66
Raspberry bushy dwarf virus (isolate Malling Jewel raspberry/R15) Viruses 3 67 61
Raspberry ringspot virus (strain cherry) Viruses 2 100 30
Rat cytomegalovirus (strain Maastricht) Viruses 167 46 39
Rattus norvegicus Eukaryota 35796 88 46
Red clover mottle virus Viruses 2 100 50
Red clover necrotic mosaic virus Viruses 3 100 63
Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235) Eukaryota 3421 79 61
Reovirus type 1 (strain Lang) Viruses 11 82 70
Reovirus type 2 (strain D5/Jones) Viruses 11 82 70
Reovirus type 3 (strain Dearing) Viruses 10 80 70
Reston ebolavirus (strain Philippines-96) Viruses 9 100 74
Reston ebolavirus (strain Reston-89) Viruses 9 100 74
Rhesus papillomavirus type 1 Viruses 8 88 84
Rhizobium etli (strain CFN 42 / ATCC 51251) Eukaryota 5920 86 64
Rhizobium etli (strain CIAT 652) Eukaryota 6050 82 63
Rhizobium fredii (strain HH103) Eukaryota 6602 82 63
Rhizobium leguminosarum bv. trifolii (strain WSM1325) Eukaryota 6988 84 64
Rhizobium leguminosarum bv. trifolii (strain WSM2304) Eukaryota 6403 85 65
Rhizobium leguminosarum bv. viciae (strain 3841) Eukaryota 7091 85 64
Rhizobium loti (strain MAFF303099) Eukaryota 7255 82 62
Rhizobium meliloti (strain 1021) Eukaryota 6169 87 66
Rhizobium sp. (strain NGR234) Eukaryota 6274 85 65
Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) Eukaryota 16968 61 39
Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) Eukaryota 3632 83 63
Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) Eukaryota 4124 85 64
Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) Eukaryota 4208 84 63
Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) Eukaryota 4112 87 65
Rhodobacter sphaeroides (strain KD131 / KCTC 12085) Eukaryota 4542 82 64
Rhodococcus equi (strain 103S) Eukaryota 4576 85 63
Rhodococcus erythropolis (strain PR4 / NBRC 100887) Eukaryota 6424 82 61
Rhodococcus opacus (strain B4) Eukaryota 8170 82 62
Rhodococcus sp. (strain RHA1) Eukaryota 9074 77 60
Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) Eukaryota 4401 87 64
Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) Eukaryota 3513 81 61
Rhodopirellula baltica (strain SH1) Eukaryota 7254 54 42
Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) Eukaryota 4811 86 63
Rhodopseudomonas palustris (strain BisA53) Eukaryota 4851 82 59
Rhodopseudomonas palustris (strain BisB18) Eukaryota 4864 83 62
Rhodopseudomonas palustris (strain BisB5) Eukaryota 4392 84 63
Rhodopseudomonas palustris (strain DX-1) Eukaryota 4908 84 63
Rhodopseudomonas palustris (strain HaA2) Eukaryota 4680 86 62
Rhodopseudomonas palustris (strain TIE-1) Eukaryota 5242 82 63
Rhodospirillum centenum (strain ATCC 51521 / SW) Eukaryota 3984 80 61
Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) Eukaryota 3835 88 63
Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) Eukaryota 2861 83 59
Rhodotorula glutinis (strain ATCC 204091 / IIP 30 / MTCC 1151) Eukaryota 2831 69 30
Rice dwarf virus (isolate Fujian) Viruses 12 42 33
Rice gall dwarf virus Viruses 12 50 35
Rice ragged stunt virus (isolate Thailand) Viruses 11 9 2
Rice stripe virus (isolate T) Viruses 7 100 59
Rice tungro bacilliform virus (isolate Philippines) Viruses 4 75 37
Rice tungro spherical virus (strain A) Viruses 1 100 35
Rice tungro spherical virus (strain Vt6) Viruses 1 100 35
Rice yellow stunt virus Viruses 7 14 31
Ricinus communis Eukaryota 31250 66 44
Rickettsia africae (strain ESF-5) Eukaryota 1041 82 64
Rickettsia akari (strain Hartford) Eukaryota 1257 67 62
Rickettsia amblyommii (strain GAT-30V) Eukaryota 1288 71 61
Rickettsia australis (strain Cutlack) Eukaryota 1222 73 64
Rickettsia bellii (strain OSU 85-389) Eukaryota 1443 73 59
Rickettsia bellii (strain RML369-C) Eukaryota 1398 79 58
Rickettsia canadensis (strain McKiel) Eukaryota 1091 72 64
Rickettsia conorii (strain ATCC VR-613 / Malish 7) Eukaryota 1372 68 60
Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) Eukaryota 1428 79 59
Rickettsia heilongjiangensis (strain ATCC VR-1524 / 054) Eukaryota 1296 69 62
Rickettsia japonica (strain ATCC VR-1363 / YH) Eukaryota 970 83 65
Rickettsia massiliae (strain Mtu5) Eukaryota 969 88 64
Rickettsia montanensis (strain OSU 85-930) Eukaryota 1215 75 63
Rickettsia parkeri (strain Portsmouth) Eukaryota 1318 69 62
Rickettsia peacockii (strain Rustic) Eukaryota 927 88 67
Rickettsia philipii (strain 364D) Eukaryota 1342 68 62
Rickettsia prowazekii (strain Madrid E) Eukaryota 834 91 67
Rickettsia prowazekii (strain Rp22) Eukaryota 951 81 67
Rickettsia rhipicephali (strain 3-7-female6-CWPP) Eukaryota 1246 71 62
Rickettsia rickettsii (strain Iowa) Eukaryota 1384 64 61
Rickettsia rickettsii (strain Sheila Smith) Eukaryota 1345 65 62
Rickettsia slovaca (strain 13-B) Eukaryota 1114 75 64
Rickettsia typhi (strain ATCC VR-144 / Wilmington) Eukaryota 836 90 67
Riemerella anatipestifer (strain ATCC 11845 / DSM 15868 / JCM 9532 / NCTC 11014) Eukaryota 1969 78 58
Riemerella anatipestifer (strain RA-GD) Eukaryota 1977 76 58
Riesia pediculicola (strain USDA) Eukaryota 540 84 76
Rift valley fever virus (strain ZH-548 M12) Viruses 4 100 67
Rinderpest virus (strain RBOK) Viruses 7 100 87
Robiginitalea biformata (strain ATCC BAA-864 / HTCC2501 / KCTC 12146) Eukaryota 3211 77 57
Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) Eukaryota 3351 79 59
Roseiflexus castenholzii (strain DSM 13941 / HLO8) Eukaryota 4324 82 56
Roseiflexus sp. (strain RS-1) Eukaryota 4494 82 55
Roseobacter denitrificans (strain ATCC 33942 / OCh 114) Eukaryota 4118 84 65
Roseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149) Eukaryota 4498 84 64
Ross river virus (strain NB5092) Viruses 2 100 67
Rotavirus (isolate Human/Bangladesh/ADRV-N B219/2002) Viruses 11 45 38
Rotavirus A (isolate Human/Belgium/B4106/2000 G3-P11[14]-I2-R2-C2-M3-A9-N2-T6-E5-H3) Viruses 12 100 91
Rotavirus A (isolate Human/United Kingdom/A64/1987 G10-P11[14]-I2-R2-C2-M1-A3-N2-T6-E2-H3) Viruses 12 100 91
Rotavirus A (isolate Human/United States/WI61/1983 G9-P1A[8]-I1-R1-C1-M1-A1-N1-T1-E1-H1) Viruses 12 100 91
Rotavirus A (isolate Monkey/South Africa/SA11-H96/1958 G3-P5B[2]-I2-R2-C5-M5-A5-N5-T5-E2-H5) Viruses 12 100 94
Rotavirus A (strain Cow/France/RF/1975 G6-P6[1]-I2-R2-C2-M2-A3-N2-T6-E2-H3) Viruses 12 100 91
Rotavirus A (strain Cow/United Kingdom/UK/1975 G6-P7[5]-I2-R2-C2-M2-A3-N2-T7-E2-H3) Viruses 12 100 91
Rotavirus A (strain Cow/United States/WC3/1981 G6-P7[5]-I2-R2-C2-M2-A3-N2-T6-E2-H3) Viruses 12 100 91
Rotavirus A (strain Human/Indonesia/69M/1980 G8-P4[10]-I2-R2-C2-M2-A2-N2-T2-E2-H2) Viruses 12 100 92
Rotavirus A (strain Human/Japan/AU-1/1982 G3-P3[9]-I3-R3-C3-M3-A3-N3-T3-E3-H3) Viruses 12 100 92
Rotavirus A (strain Human/Japan/KU/1995 G1-P1A[8]-I1-R1-C1-M1-A1-N1-T1-E1-H1) Viruses 12 100 92
Rotavirus A (strain Human/Philippines/L26/1987 G12-P1B[4]-I2-R2-C2-M1/M2-A2-N1-T2-E2-H1) Viruses 12 100 92
Rotavirus A (strain Human/United Kingdom/ST3/1975 G4-P2A[6]-I1-R1-C1-M1-A1-N1-T1-E1-H1) Viruses 12 100 92
Rotavirus A (strain Human/United States/D/1974 G1-P1A[8]-I1-R1-C1-M1-A1-N1-T1-E1-H1) Viruses 12 100 92
Rotavirus A (strain Human/United States/DS-1/1976 G2-P1B[4]-I2-R2-C2-M2-A2-N2-T2-E2-H2) Viruses 12 100 92
Rotavirus A (strain Human/United States/P/1974 G3-P1A[8]-I1-R1-C1-M1-A1-N1-T1-E1-H1) Viruses 12 100 92
Rotavirus A (strain Human/United States/Wa/1974 G1-P1A[8]-I1-R1-C1-M1-A1-N1-T1-E1-H1) Viruses 12 100 92
Rotavirus A (strain SA11-Both G3-P5B[2]-I2-R2-C5-M5-A5-N2-T5-E2-H5) Viruses 12 100 94
Rotavirus B (isolate Human/China/ADRV-N J19/1997) Viruses 11 45 35
Rotavirus C (isolate Human/United Kingdom/Bristol/1989) Viruses 11 91 89
Rotavirus C (strain Pig/United States/Cowden/1980) Viruses 11 82 83
Rothia dentocariosa (strain ATCC 17931 / CDC X599 / XDIA) Eukaryota 2212 73 55
Rothia mucilaginosa (strain DY-18) Eukaryota 1991 68 45
Rous sarcoma virus (strain Prague C) Viruses 5 80 60
Rubella virus (strain BRD1) Viruses 2 100 60
Rubella virus (strain BRDII) Viruses 2 100 60
Rubella virus (strain Cendehill) Viruses 2 100 60
Rubella virus (strain M33) Viruses 2 100 60
Rubella virus (strain RA27/3 vaccine) Viruses 2 100 60
Rubella virus (strain RN-UK86) Viruses 2 100 60
Rubella virus (strain Therien) Viruses 2 100 60
Rubella virus (strain TO-336 vaccine) Viruses 2 100 61
Rubella virus (strain TO-336) Viruses 2 100 60
Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) Eukaryota 3127 87 67
Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) Eukaryota 3775 69 50
Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) Eukaryota 2114 76 58
Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) Eukaryota 5750 75 54
Ruthia magnifica subsp. Calyptogena magnifica Eukaryota 976 93 75
Ryegrass mosaic virus (isolate Denmark/Danish) Viruses 1 100 84
Sabia virus (isolate Human/Brasil/SPH114202/1990) Viruses 4 100 97
Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101) Eukaryota 3828 83 62
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) Eukaryota 6624 74 43
Saccharomyces cerevisiae (strain AWRI1631) Eukaryota 5450 74 44
Saccharomyces cerevisiae (strain AWRI796) Eukaryota 3760 81 50
Saccharomyces cerevisiae (strain FostersB) Eukaryota 3679 80 50
Saccharomyces cerevisiae (strain FostersO) Eukaryota 3560 79 51
Saccharomyces cerevisiae (strain JAY291) Eukaryota 5193 84 45
Saccharomyces cerevisiae (strain Kyokai no. 7 / NBRC 101557) Eukaryota 5776 83 45
Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) Eukaryota 5981 75 45
Saccharomyces cerevisiae (strain Lalvin QA23) Eukaryota 4008 82 50
Saccharomyces cerevisiae (strain RM11-1a) Eukaryota 5357 83 46
Saccharomyces cerevisiae (strain VIN 13) Eukaryota 3916 81 49
Saccharomyces cerevisiae (strain YJM789) n/a 5861 82 45
Saccharomyces cerevisiae (strain Zymaflore VL3) Eukaryota 4014 81 49
Saccharomyces cerevisiae virus L-A Viruses 2 100 62
Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) Eukaryota 3999 82 56
Saccharopolyspora erythraea (strain NRRL 23338) Eukaryota 7154 82 61
Sagiyama virus Viruses 2 100 68
Saimiriine herpesvirus 2 (strain 11) Viruses 75 89 68
Salinibacter ruber (strain DSM 13855 / M31) Eukaryota 2812 81 57
Salinibacter ruber (strain M8) Eukaryota 3247 75 55
Salinispora arenicola (strain CNS-205) Eukaryota 4848 79 58
Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) Eukaryota 4522 81 57
Salmon pancreas disease virus Viruses 2 100 69
Salmonella agona (strain SL483) Eukaryota 4592 86 71
Salmonella bongori (strain ATCC 43975 / DSM 13772 / NCTC 12419) Eukaryota 3853 94 73
Salmonella choleraesuis (strain SC-B67) Eukaryota 4598 87 71
Salmonella dublin (strain CT_02021853) Eukaryota 4606 86 71
Salmonella enteritidis PT4 (strain P125109) Eukaryota 4198 93 73
Salmonella gallinarum (strain 287/91 / NCTC 13346) Eukaryota 3953 94 73
Salmonella heidelberg (strain SL476) Eukaryota 4757 85 71
Salmonella newport (strain SL254) Eukaryota 4784 85 71
Salmonella paratyphi A (strain AKU_12601) Eukaryota 4274 90 72
Salmonella paratyphi A (strain ATCC 9150 / SARB42) Eukaryota 4082 92 73
Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) Eukaryota 5556 73 69
Salmonella paratyphi C (strain RKS4594) Eukaryota 4600 86 71
Salmonella phage epsilon15 Viruses 51 39 25
Salmonella pullorum (strain RKS5078 / SGSC2294) Eukaryota 4317 85 72
Salmonella schwarzengrund (strain CVM19633) Eukaryota 4602 86 71
Salmonella typhimurium (strain 14028s / SGSC 2262) Eukaryota 5368 78 70
Salmonella typhimurium (strain 4/74) Eukaryota 4825 89 71
Salmonella typhimurium (strain ATCC 68169 / UK-1) Eukaryota 4539 92 72
Salmonella typhimurium (strain D23580) Eukaryota 4545 92 72
Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) Eukaryota 4533 93 72
Salmonella typhimurium (strain SL1344) Eukaryota 4448 93 72
Salpingoeca sp. (strain ATCC 50818) Eukaryota 11698 68 28
San Miguel sea lion virus serotype 1 Viruses 3 100 40
Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) Eukaryota 3710 83 57
Sapovirus (strain GII/Human/Japan/Sakai C12/2001) Viruses 3 100 47
Sapporo virus (isolate GI/Human/Germany/pJG-Sap01) Viruses 3 100 53
Saprospira grandis (strain Lewin) Eukaryota 4218 54 43
Sarcophilus harrisii Eukaryota 22392 87 45
Satsuma dwarf virus (isolate Satsuma mandarin/Japan/S-58/1977) Viruses 2 100 19
Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) Eukaryota 5797 83 46
Schistosoma mansoni Eukaryota 11710 64 32
Schizophyllum commune (strain H4-8 / FGSC 9210) Eukaryota 13127 57 31
Schizosaccharomyces japonicus (strain yFS275 / FY16936) Eukaryota 4780 88 48
Schizosaccharomyces pombe (strain 972 / ATCC 24843) Eukaryota 5090 88 49
Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) Eukaryota 14400 49 35
Sclerotinia sclerotiorum debilitation-associated virus (isolate Sclerotinia/China/Xie/-) Viruses 1 100 52
Sebaldella termitidis (strain ATCC 33386 / NCTC 11300) Eukaryota 4058 72 55
Segniliparus rotundus (strain ATCC BAA-972 / CDC 1076 / CIP 108378 / DSM 44985 / JCM 13578) Eukaryota 3001 73 57
Selaginella moellendorffii Eukaryota 33149 75 45
Semliki forest virus Viruses 2 100 69
Sendai virus (strain Fushimi) Viruses 11 82 68
Sendai virus (strain Hamamatsu) Viruses 8 100 75
Sendai virus (strain Ohita) Viruses 9 89 71
Sendai virus (strain Z) Viruses 7 86 63
Seneca Valley virus (isolate -/United States/SSV-001/2002) Viruses 1 100 55
Serpula lacrymans var. lacrymans (strain S7.3) Eukaryota 14333 48 36
Serpula lacrymans var. lacrymans (strain S7.9) Eukaryota 12720 51 37
Serratia plymuthica (strain AS9) Eukaryota 4950 91 71
Serratia proteamaculans (strain 568) Eukaryota 4930 93 71
Shallot virus X Viruses 6 100 61
Sheep pulmonary adenomatosis virus Viruses 5 100 61
Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) Eukaryota 3637 90 65
Shewanella baltica (strain OS155 / ATCC BAA-1091) Eukaryota 4223 87 65
Shewanella baltica (strain OS185) Eukaryota 4367 85 63
Shewanella baltica (strain OS195) Eukaryota 4618 84 62
Shewanella baltica (strain OS223) Eukaryota 4384 84 64
Shewanella baltica (strain OS678) Eukaryota 4503 83 63
Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) Eukaryota 3727 85 62
Shewanella frigidimarina (strain NCIMB 400) Eukaryota 3990 88 65
Shewanella halifaxensis (strain HAW-EB4) Eukaryota 4276 87 65
Shewanella loihica (strain ATCC BAA-1088 / PV-4) Eukaryota 3855 88 65
Shewanella oneidensis (strain MR-1) Eukaryota 4586 77 63
Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) Eukaryota 4181 87 64
Shewanella piezotolerans (strain WP3 / JCM 13877) Eukaryota 4897 77 62
Shewanella putrefaciens (strain 200) Eukaryota 4064 85 65
Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) Eukaryota 3948 88 65
Shewanella sediminis (strain HAW-EB3) Eukaryota 4493 88 64
Shewanella sp. (strain ANA-3) Eukaryota 4341 87 63
Shewanella sp. (strain MR-4) Eukaryota 3918 88 65
Shewanella sp. (strain MR-7) Eukaryota 4003 87 64
Shewanella sp. (strain W3-18-1) Eukaryota 4007 87 65
Shewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12) Eukaryota 4336 78 62
Shewanella woodyi (strain ATCC 51908 / MS32) Eukaryota 4865 84 61
Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) Eukaryota 4140 87 72
Shigella boydii serotype 4 (strain Sb227) Eukaryota 3936 92 72
Shigella dysenteriae serotype 1 (strain Sd197) Eukaryota 3888 91 72
Shigella flexneri Eukaryota 4614 92 72
Shigella flexneri serotype 5b (strain 8401) Eukaryota 3866 93 73
Shigella flexneri serotype X (strain 2002017) Eukaryota 4455 87 70
Shigella sonnei (strain Ss046) Eukaryota 4052 94 72
Sideroxydans lithotrophicus (strain ES-1) Eukaryota 2977 82 63
Silicibacter pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) Eukaryota 4242 89 66
Silicibacter sp. (strain TM1040) Eukaryota 3849 86 65
Simian foamy virus (isolate chimpanzee) Viruses 5 100 75
Simian foamy virus type 1 Viruses 5 100 75
Simian foamy virus type 3 (strain LK3) Viruses 5 100 76
Simian hepatitis A virus genotype IV (isolate CY-145) Viruses 1 100 48
Simian hepatitis A virus genotype V (isolate AGM-27) Viruses 1 100 53
Simian immunodeficiency virus (isolate EK505) Viruses 9 100 83
Simian immunodeficiency virus (isolate F236/smH4) Viruses 9 100 81
Simian immunodeficiency virus (isolate MB66) Viruses 9 100 83
Simian immunodeficiency virus (isolate Mm142-83) Viruses 9 100 80
Simian immunodeficiency virus (isolate PBj14/BCL-3) Viruses 9 100 81
Simian immunodeficiency virus (isolate TAN1) Viruses 9 89 79
Simian retrovirus SRV-1 Viruses 5 80 69
Simian retrovirus SRV-2 Viruses 4 100 72
Simian virus 40 Viruses 6 83 84
Simian virus 41 Viruses 8 100 79
Simian virus 5 (strain W3) Viruses 8 88 79
Simkania negevensis (strain ATCC VR-1471 / Z) Eukaryota 2515 59 46
Sindbis virus Viruses 3 100 63
Sindbis virus subtype Ockelbo (strain Edsbyn 82-5) Viruses 2 100 67
Sinorhizobium medicae (strain WSM419) Eukaryota 6145 85 65
Sinorhizobium meliloti (strain AK83) Eukaryota 6416 83 65
Sinorhizobium meliloti (strain BL225C) Eukaryota 6307 85 65
Sinorhizobium meliloti (strain SM11) Eukaryota 7316 80 63
Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029 / RHS 1) Eukaryota 2750 81 58
Sleeping disease virus Viruses 2 100 70
Snakehead rhabdovirus Viruses 6 83 74
Sodalis glossinidius (strain morsitans) Eukaryota 2490 88 67
Soil-borne wheat mosaic virus (strain United States/Nebraska/1981) Viruses 5 100 61
Solenopsis invicta Eukaryota 14193 58 36
Solibacillus silvestris (strain StLB046) Eukaryota 3799 83 66
Solibacter usitatus (strain Ellin6076) Eukaryota 7761 78 49
Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) Eukaryota 4304 77 55
Sonchus yellow net virus Viruses 6 17 32
Sorangium cellulosum (strain So ce56) Eukaryota 9320 69 43
Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) Eukaryota 9891 67 35
Sorghum bicolor Eukaryota 32812 73 42
Southern bean mosaic virus (isolate Bean/United States/Arkansas) Viruses 4 75 56
Southern cowpea mosaic virus Viruses 4 75 38
Soybean chlorotic mottle virus Viruses 9 44 26
Soybean mosaic virus (strain G2) Viruses 2 50 83
Soybean mosaic virus (strain N) Viruses 2 50 83
Spathaspora passalidarum (strain NRRL Y-27907 / 11-Y1) Eukaryota 5973 79 46
Sphaerobacter thermophilus (strain DSM 20745 / S 6022) Eukaryota 3471 84 62
Sphaerochaeta globosa (strain ATCC BAA-1886 / DSM 22777 / Buddy) Eukaryota 3007 83 62
Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes) Eukaryota 3150 85 63
Sphingobacterium sp. (strain 21) Eukaryota 5132 80 60
Sphingobium japonicum (strain NBRC 101211 / UT26S) Eukaryota 4347 78 60
Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) Eukaryota 5313 87 62
Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) Eukaryota 3184 85 62
Spirochaeta caldaria (strain ATCC 51460 / DSM 7334 / H1) Eukaryota 2754 83 58
Spirochaeta coccoides (strain ATCC BAA-1237 / DSM 17374 / SPN1) Eukaryota 1819 86 63
Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) Eukaryota 4211 84 61
Spirochaeta thermophila (strain ATCC 49972 / DSM 6192 / RI 19.B1) Eukaryota 2199 83 59
Spiroplasma virus 4 Viruses 9 11 38
Spiroplasma virus SpV1-C74 Viruses 13 38 20
Spiroplasma virus SpV1-R8A2 B Viruses 12 42 20
Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) Eukaryota 6867 76 54
Spodoptera frugiperda ascovirus 1a Viruses 123 33 26
Sporisorium reilianum (strain SRZ2) Eukaryota 6673 77 35
Spring viremia of carp virus Viruses 5 100 87
Sputnik virophage Viruses 21 5 3
Squash leaf curl virus Viruses 5 100 80
Squirrel monkey retrovirus Viruses 4 100 68
Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) Eukaryota 6379 78 55
Staphylococcus aureus (strain 04-02981) Eukaryota 2639 86 70
Staphylococcus aureus (strain bovine RF122 / ET3-1) Eukaryota 2512 86 70
Staphylococcus aureus (strain COL) Eukaryota 2680 83 69
Staphylococcus aureus (strain ECT-R 2) Eukaryota 2514 88 70
Staphylococcus aureus (strain ED98) Eukaryota 2683 84 69
Staphylococcus aureus (strain JH1) Eukaryota 2761 85 69
Staphylococcus aureus (strain JH9) Eukaryota 2708 87 69
Staphylococcus aureus (strain JKD6008) Eukaryota 2652 86 69
Staphylococcus aureus (strain JKD6159) Eukaryota 2577 87 69
Staphylococcus aureus (strain MRSA ST398 / isolate S0385) Eukaryota 2648 85 69
Staphylococcus aureus (strain MRSA252) Eukaryota 2640 85 69
Staphylococcus aureus (strain MSSA476) Eukaryota 2602 86 70
Staphylococcus aureus (strain Mu3 / ATCC 700698) Eukaryota 2684 86 69
Staphylococcus aureus (strain Mu50 / ATCC 700699) Eukaryota 2714 86 69
Staphylococcus aureus (strain MW2) Eukaryota 2660 86 69
Staphylococcus aureus (strain N315) Eukaryota 2580 87 70
Staphylococcus aureus (strain NCTC 8325) Eukaryota 2887 80 68
Staphylococcus aureus (strain Newman) Eukaryota 2583 88 69
Staphylococcus aureus (strain TCH60) Eukaryota 2693 85 69
Staphylococcus aureus (strain TW20 / 0582) Eukaryota 2764 84 67
Staphylococcus aureus (strain USA300 / TCH1516) Eukaryota 2688 82 69
Staphylococcus aureus (strain USA300) Eukaryota 2607 88 70
Staphylococcus aureus subsp. aureus (strain ED133) Eukaryota 2622 85 70
Staphylococcus carnosus (strain TM300) Eukaryota 2460 88 70
Staphylococcus epidermidis (strain ATCC 12228) Eukaryota 2461 82 69
Staphylococcus epidermidis (strain ATCC 35984 / RP62A) Eukaryota 2492 80 68
Staphylococcus haemolyticus (strain JCSC1435) Eukaryota 2640 83 68
Staphylococcus lugdunensis (strain HKU09-01) Eukaryota 2456 87 70
Staphylococcus phage 44AHJD Viruses 21 19 13
Staphylococcus phage S13' Viruses 21 19 13
Staphylococcus phage S24-1 Viruses 21 19 13
Staphylococcus pseudintermedius (strain ED99) Eukaryota 2346 86 70
Staphylococcus pseudintermedius (strain HKU10-03) Eukaryota 2449 85 69
Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) Eukaryota 2404 88 72
Staphylothermus hellenicus (strain DSM 12710 / JCM 10830 / BK20S6-10-b1 / P8) Archaea 1599 71 54
Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) Archaea 1570 74 56
Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) Eukaryota 4424 87 66
Stenotrophomonas maltophilia (strain K279a) Eukaryota 4369 81 60
Stenotrophomonas maltophilia (strain R551-3) Eukaryota 4026 85 61
Stigmatella aurantiaca (strain DW4/3-1) Eukaryota 8307 72 49
Strawberry mild yellow edge-associated virus Viruses 6 83 63
Streptobacillus moniliformis (strain ATCC 14647 / DSM 12112 / NCTC 10651 / 9901) Eukaryota 1423 79 58
Streptococcus agalactiae serotype Ia Eukaryota 1983 89 69
Streptococcus agalactiae serotype III Eukaryota 1999 88 67
Streptococcus agalactiae serotype V Eukaryota 2105 85 68
Streptococcus dysgalactiae subsp. equisimilis (strain ATCC 12394 / D166B) Eukaryota 2049 86 68
Streptococcus dysgalactiae subsp. equisimilis (strain GGS_124) Eukaryota 2090 86 68
Streptococcus equi subsp. equi (strain 4047) Eukaryota 1916 85 65
Streptococcus equi subsp. zooepidemicus (strain ATCC 35246 / C74-63) Eukaryota 2063 79 64
Streptococcus equi subsp. zooepidemicus (strain H70) Eukaryota 1851 87 65
Streptococcus equi subsp. zooepidemicus (strain MGCS10565) Eukaryota 1861 83 65
Streptococcus gallolyticus (strain ATCC 43143 / F-1867) Eukaryota 2238 86 67
Streptococcus gallolyticus (strain ATCC BAA-2069) Eukaryota 2291 84 67
Streptococcus gallolyticus (strain UCN34) Eukaryota 2216 88 67
Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) Eukaryota 2050 85 65
Streptococcus infantarius (strain CJ18) Eukaryota 1874 86 69
Streptococcus macedonicus (strain ACA-DC 198) Eukaryota 1994 86 68
Streptococcus mitis (strain B6) Eukaryota 1971 87 66
Streptococcus mutans Eukaryota 1953 87 69
Streptococcus mutans serotype c (strain NN2025) Eukaryota 1892 89 70
Streptococcus oralis (strain Uo5) Eukaryota 1906 84 65
Streptococcus parasanguinis (strain ATCC 15912 / DSM 6778 / CIP 104372 / LMG 14537) Eukaryota 2022 85 65
Streptococcus parauberis (strain KCTC 11537) Eukaryota 1864 92 71
Streptococcus pasteurianus (strain ATCC 43144 / JCM 5346 / CDC 1723-81) Eukaryota 1864 90 71
Streptococcus pneumoniae Eukaryota 2109 82 68
Streptococcus pneumoniae (strain 670-6B) Eukaryota 2336 80 66
Streptococcus pneumoniae (strain 70585) Eukaryota 2178 83 68
Streptococcus pneumoniae (strain AP200) Eukaryota 2204 84 68
Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) Eukaryota 1984 87 68
Streptococcus pneumoniae (strain ATCC BAA-255 / R6) Eukaryota 2029 86 69
Streptococcus pneumoniae (strain CGSP14) Eukaryota 2193 84 67
Streptococcus pneumoniae (strain Hungary19A-6) Eukaryota 2152 82 67
Streptococcus pneumoniae (strain JJA) Eukaryota 2120 83 68
Streptococcus pneumoniae (strain P1031) Eukaryota 2068 83 68
Streptococcus pneumoniae (strain Taiwan19F-14) Eukaryota 2034 84 68
Streptococcus pneumoniae serotype 1 (strain INV104) Eukaryota 1791 90 70
Streptococcus pneumoniae serotype 14 (strain INV200) Eukaryota 1905 87 69
Streptococcus pneumoniae serotype 19F (strain G54) Eukaryota 2105 85 68
Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) Eukaryota 1918 87 69
Streptococcus pneumoniae serotype 3 (strain OXC141) Eukaryota 1822 88 70
Streptococcus pneumoniae serotype A19 (strain TCH8431) Eukaryota 2263 80 68
Streptococcus pseudopneumoniae (strain IS7493) Eukaryota 2234 80 65
Streptococcus pyogenes serotype M1 Eukaryota 2307 82 67
Streptococcus pyogenes serotype M12 (strain MGAS2096) Eukaryota 1885 84 67
Streptococcus pyogenes serotype M12 (strain MGAS9429) Eukaryota 1868 82 68
Streptococcus pyogenes serotype M18 Eukaryota 1836 86 69
Streptococcus pyogenes serotype M2 (strain MGAS10270) Eukaryota 1964 82 67
Streptococcus pyogenes serotype M28 Eukaryota 1884 83 67
Streptococcus pyogenes serotype M3 Eukaryota 1859 85 68
Streptococcus pyogenes serotype M4 (strain MGAS10750) Eukaryota 1964 83 67
Streptococcus pyogenes serotype M49 (strain NZ131) Eukaryota 1700 88 70
Streptococcus pyogenes serotype M6 Eukaryota 1879 84 68
Streptococcus salivarius (strain 57.I) Eukaryota 1933 87 66
Streptococcus salivarius (strain CCHSS3) Eukaryota 1999 86 65
Streptococcus salivarius (strain JIM8777) Eukaryota 1978 86 63
Streptococcus sanguinis (strain SK36) Eukaryota 2269 85 64
Streptococcus suis (strain 05ZYH33) Eukaryota 2178 82 65
Streptococcus suis (strain 98HAH33) Eukaryota 2179 82 65
Streptococcus suis (strain BM407) Eukaryota 1922 88 67
Streptococcus suis (strain GZ1) Eukaryota 1966 86 66
Streptococcus suis (strain JS14) Eukaryota 2055 84 66
Streptococcus suis (strain P1/7) Eukaryota 1814 88 68
Streptococcus suis (strain SC84) Eukaryota 1887 88 67
Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) Eukaryota 1577 87 70
Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) Eukaryota 1704 81 69
Streptococcus thermophilus (strain CNRZ 1066) Eukaryota 1590 87 71
Streptococcus thermophilus (strain ND03) Eukaryota 1907 80 69
Streptococcus uberis (strain ATCC BAA-854 / 0140J) Eukaryota 1760 90 72
Streptomyces avermitilis Eukaryota 7664 79 56
Streptomyces bingchenggensis (strain BCW-1) Eukaryota 10019 79 57
Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057) Eukaryota 9591 70 53
Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) Eukaryota 8038 79 55
Streptomyces flavogriseus (strain ATCC 33331 / DSM 40990 / IAF-45CD) Eukaryota 6292 82 57
Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) Eukaryota 7008 81 56
Streptomyces hygroscopicus subsp. jinggangensis (strain 5008) Eukaryota 9045 77 57
Streptomyces phage phiC31 Viruses 53 30 25
Streptomyces scabies (strain 87.22) Eukaryota 8700 77 55
Streptomyces venezuelae (strain ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745) Eukaryota 7450 78 55
Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) Eukaryota 8926 80 57
Striped jack nervous necrosis virus Viruses 3 67 45
Strongylocentrotus purpuratus Eukaryota 28508 78 41
Subterranean clover stunt virus (strain F) Viruses 8 63 54
Sudan ebolavirus (strain Uganda-00) Viruses 9 100 74
Sugarcane streak virus (isolate South Africa) Viruses 4 100 74
Sulcia muelleri (strain CARI) Eukaryota 246 97 77
Sulcia muelleri (strain DMIN) Eukaryota 226 96 76
Sulcia muelleri (strain GWSS) Eukaryota 227 96 77
Sulcia muelleri (strain SMDSEM) Eukaryota 242 98 77
Sulfobacillus acidophilus (strain TPY) Eukaryota 3722 75 62
Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) Archaea 2221 74 59
Sulfolobus islandicus (strain HVE10/4) Archaea 2718 74 59
Sulfolobus islandicus (strain L.D.8.5 / Lassen #2) Archaea 2911 69 57
Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) Archaea 2725 73 58
Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) Archaea 2597 75 59
Sulfolobus islandicus (strain M.16.27) Archaea 2650 74 58
Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) Archaea 2729 72 58
Sulfolobus islandicus (strain REY15A) Archaea 2631 73 59
Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) Archaea 2878 71 57
Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) Archaea 2853 71 58
Sulfolobus islandicus filamentous virus (isolate Iceland/Hveragerdi) Viruses 73 15 12
Sulfolobus islandicus rod-shaped virus 1 Viruses 43 37 20
Sulfolobus solfataricus (strain 98/2) Archaea 2617 72 59
Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) Archaea 2938 76 59
Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) Archaea 2805 71 56
Sulfolobus virus-like particle SSV1 Viruses 34 32 16
Sulfuricurvum kujiense (strain ATCC BAA-921 / DSM 16994 / JCM 11577 / YK-1) Eukaryota 2794 79 60
Sulfurihydrogenibium sp. (strain YO3AOP1) Eukaryota 1712 86 67
Sulfurimonas autotrophica (strain ATCC BAA-671 / DSM 16294 / JCM 11897 / OK10) Eukaryota 2155 82 63
Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) Eukaryota 2084 84 62
Sulfurospirillum deleyianum (strain ATCC 51133 / DSM 6946 / 5175) Eukaryota 2243 84 63
Sulfurovum sp. (strain NBC37-1) Eukaryota 2433 82 61
Sunn-hemp mosaic virus Viruses 3 100 70
Sus scrofa Eukaryota 19616 87 47
Sweet potato mild mottle virus (isolate Salazar) Viruses 1 100 58
Swine vesicular disease virus (strain H/3 '76) Viruses 1 100 75
Swine vesicular disease virus (strain UKG/27/72) Viruses 1 100 75
Swinepox virus (strain Swine/Nebraska/17077-99/1999) Viruses 146 92 79
Symbiobacterium thermophilum Eukaryota 3312 82 62
Synechococcus elongatus (strain PCC 7942) Eukaryota 2657 83 63
Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) Eukaryota 2525 85 64
Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) Eukaryota 3178 80 60
Synechococcus sp. (strain CC9311) Eukaryota 2882 69 61
Synechococcus sp. (strain CC9605) Eukaryota 2633 72 60
Synechococcus sp. (strain CC9902) Eukaryota 2301 78 62
Synechococcus sp. (strain JA-2-3B'a(2-13)) Eukaryota 2834 79 60
Synechococcus sp. (strain JA-3-3Ab) Eukaryota 2748 80 61
Synechococcus sp. (strain RCC307) Eukaryota 2528 73 62
Synechococcus sp. (strain WH7803) Eukaryota 2530 77 62
Synechococcus sp. (strain WH8102) Eukaryota 2512 76 60
Synechocystis sp. (strain PCC 6803 / GT-S) Eukaryota 3146 84 61
Synechocystis sp. (strain PCC 6803 / Kazusa) Eukaryota 3506 81 59
Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) Eukaryota 4012 80 58
Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR) Eukaryota 3105 84 63
Syntrophomonas wolfei subsp. wolfei (strain Goettingen) Eukaryota 2473 86 62
Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) Eukaryota 2311 84 65
Syntrophus aciditrophicus (strain SB) Eukaryota 3143 75 61
Tacaribe virus (strain Franze-Fernandez) Viruses 4 100 98
Taeniopygia guttata Eukaryota 18141 86 49
Takifugu rubripes Eukaryota 47821 95 50
Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) Eukaryota 12996 73 42
Tamiami virus (isolate Rat/United States/W 10777/1964) Viruses 4 100 98
Tannerella forsythia (strain ATCC 43037 / JCM 10827 / FDC 338) Eukaryota 2977 68 55
Taro vein chlorosis virus Viruses 6 17 33
Taylorella asinigenitalis (strain MCE3) Eukaryota 1523 86 65
Taylorella equigenitalis (strain MCE9) Eukaryota 1556 87 65
Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) Eukaryota 2519 87 67
Teredinibacter turnerae (strain ATCC 39867 / T7901) Eukaryota 4249 77 58
Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) Eukaryota 4177 80 53
Tetragenococcus halophilus (strain DSM 20338 / JCM 20259 / NCIMB 9735 / NBRC 12172) Eukaryota 2507 86 70
Tetrahymena thermophila (strain SB210) Eukaryota 15277 42 17
Tetraodon nigroviridis Eukaryota 23138 92 49
Tetrapisispora phaffii (strain ATCC 24235 / CBS 4417 / NBRC 1672 / NRRL Y-8282 / UCD 70-5) Eukaryota 5238 83 43
Thalassiosira pseudonana Eukaryota 11718 63 29
Thauera sp. (strain MZ1T) Eukaryota 3927 87 63
Theiler's murine encephalomyelitis virus (strain BeAn 8386) Viruses 1 100 53
Theiler's murine encephalomyelitis virus (strain DA) Viruses 1 100 53
Theiler's murine encephalomyelitis virus (strain GDVII) Viruses 1 100 53
Theileria annulata Eukaryota 3790 61 27
Theileria parva Eukaryota 4070 58 28
Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) Eukaryota 2324 87 61
Thermanaerovibrio acidaminovorans (strain ATCC 49978 / DSM 6589 / Su883) Eukaryota 1737 90 68
Thermincola potens (strain JR) Eukaryota 2908 85 64
Thermoanaerobacter brockii subsp. finnii (strain ATCC 43586 / DSM 3389 / AKO-1) Eukaryota 2180 89 70
Thermoanaerobacter italicus (strain DSM 9252 / Ab9) Eukaryota 2240 88 69
Thermoanaerobacter mathranii (strain DSM 11426 / CIP 108742 / A3) Eukaryota 2158 89 70
Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) Eukaryota 2193 90 70
Thermoanaerobacter sp. (strain X513) Eukaryota 2308 89 69
Thermoanaerobacter sp. (strain X514) Eukaryota 2323 89 69
Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) Eukaryota 2545 85 67
Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIB 9385 / NCA 3814) Eukaryota 2583 86 67
Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 / LX-11) Eukaryota 2318 89 68
Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) Eukaryota 2827 85 63
Thermobifida fusca (strain YX) Eukaryota 3085 83 60
Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) Eukaryota 3545 84 60
Thermococcus barophilus (strain DSM 11836 / MP) Archaea 2265 79 61
Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) Archaea 2155 77 57
Thermococcus onnurineus (strain NA1) Archaea 1976 81 62
Thermococcus sibiricus (strain MM 739 / DSM 12597) Archaea 2035 80 64
Thermococcus sp. (strain CGMCC 1.5172 / 4557) Archaea 2133 78 59
Thermocrinis albus (strain DSM 14484 / JCM 11386 / HI 11/12) Eukaryota 1592 86 68
Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) Eukaryota 2184 87 65
Thermodesulfobacterium sp. (strain OPB45) Eukaryota 1594 88 66
Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) Eukaryota 1982 87 67
Thermofilum pendens (strain Hrk 5) Archaea 1876 73 55
Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) Eukaryota 2858 76 62
Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) Eukaryota 4888 80 57
Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) Archaea 1481 83 64
Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) Archaea 1523 81 63
Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) Archaea 1965 70 56
Thermoproteus tenax (strain ATCC 35583 / NBRC 100435 / JCM 9277 / Kra 1) Archaea 2047 71 58
Thermoproteus tenax virus 1 (strain KRA1) Viruses 37 3 1
Thermoproteus uzoniensis (strain 768-20) Archaea 2185 70 57
Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) Eukaryota 2151 87 69
Thermosipho africanus (strain TCF52B) Eukaryota 1918 83 63
Thermosipho melanesiensis (strain BI429 / DSM 12029) Eukaryota 1877 83 62
Thermosphaera aggregans (strain DSM 11486 / M11TL) Archaea 1387 74 58
Thermosynechococcus elongatus (strain BP-1) Eukaryota 2451 84 64
Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) Eukaryota 2040 90 67
Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) Eukaryota 1848 87 67
Thermotoga naphthophila (strain ATCC BAA-489 / DSM 13996 / JCM 10882 / RKU-10) Eukaryota 1765 89 68
Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) Eukaryota 1937 86 66
Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) Eukaryota 1783 89 67
Thermotoga sp. (strain RQ2) Eukaryota 1817 90 67
Thermovibrio ammonificans (strain DSM 15698 / JCM 12110 / HB-1) Eukaryota 1812 80 62
Thermovirga lienii (strain ATCC BAA-1197 / DSM 17291 / Cas60314) Eukaryota 1853 91 70
Thermus scotoductus (strain ATCC 700910 / SA-01) Eukaryota 2442 82 64
Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) Eukaryota 2200 85 65
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) Eukaryota 2227 84 65
Thermus thermophilus (strain SG0.5JP17-16) Eukaryota 2327 84 65
Thielavia heterothallica (strain ATCC 42464 / BCRC 31852 / DSM 1799) Eukaryota 9081 69 39
Thielavia terrestris (strain ATCC 38088 / NRRL 8126) Eukaryota 9760 68 39
Thioalkalimicrobium cyclicum (strain DSM 14477 / JCM 11371 / ALM1) Eukaryota 1664 90 62
Thioalkalivibrio sp. (strain HL-EbGR7) Eukaryota 3272 85 64
Thioalkalivibrio sp. (strain K90mix) Eukaryota 2548 88 66
Thiobacillus denitrificans (strain ATCC 25259) Eukaryota 2826 86 64
Thiomicrospira crunogena (strain XCL-2) Eukaryota 2187 88 66
Thiomonas intermedia (strain K12) Eukaryota 3077 89 66
Thiomonas sp. (strain 3As) Eukaryota 3519 84 64
Thogoto virus (isolate SiAr 126) Viruses 7 57 61
Tick-borne encephalitis virus (strain Hypr) Viruses 1 100 87
Tick-borne encephalitis virus European subtype (strain Neudoerfl) Viruses 1 100 87
Tick-borne encephalitis virus Far Eastern subtype (strain Sofjin) Viruses 1 100 87
Tick-borne powassan virus (strain LB) Viruses 1 100 87
Tobacco etch virus Viruses 2 50 82
Tobacco mild green mosaic virus Viruses 3 100 71
Tobacco mosaic virus (strain B935A) Viruses 3 100 70
Tobacco mosaic virus (strain Korean NC 82) Viruses 3 100 70
Tobacco mosaic virus (strain OM) Viruses 1 100 69
Tobacco mosaic virus (strain Rakkyo) Viruses 3 100 70
Tobacco mosaic virus (strain vulgare) Viruses 3 100 70
Tobacco necrosis virus (strain A) Viruses 5 60 77
Tobacco rattle virus (isolate PpK20) Viruses 6 67 53
Tobacco streak virus (strain WC) Viruses 5 80 59
Tobacco vein mottling virus Viruses 2 50 84
Tobacco yellow dwarf virus (strain Australia) Viruses 4 100 78
Tobamovirus Ob Viruses 3 100 71
Tolumonas auensis (strain DSM 9187 / TA4) Eukaryota 3126 90 70
Tomato aspermy virus Viruses 5 100 77
Tomato bushy stunt virus (strain Cherry) Viruses 4 100 76
Tomato golden mosaic virus (strain Yellow vein) Viruses 7 100 89
Tomato leaf curl virus (strain Australia) Viruses 6 100 81
Tomato mosaic virus (strain Kazakh K1) Viruses 3 100 71
Tomato mosaic virus (strain Kazakh K2) Viruses 3 100 71
Tomato mosaic virus (strain L) Viruses 3 100 71
Tomato mosaic virus (strain S-1) Viruses 3 100 71
Tomato mottle virus (isolate Florida) Viruses 6 100 87
Tomato pseudo-curly top virus Viruses 6 83 75
Tomato ringspot virus (isolate raspberry) Viruses 4 50 23
Tomato spotted wilt virus (strain Brazilian Br-01) Viruses 5 100 43
Tomato torrado virus (isolate Solanum lycopersicum/Spain/PRIToTV0301/-) Viruses 3 67 24
Tomato yellow leaf curl China virus Viruses 6 100 82
Tomato yellow leaf curl Sardinia virus Viruses 6 100 82
Tomato yellow leaf curl Sardinia virus (isolate Spain-1) Viruses 6 100 82
Tomato yellow leaf curl Sardinia virus (isolate Spain-2) Viruses 6 100 82
Tomato yellow leaf curl virus (strain Israel) Viruses 6 100 82
Torque teno canis virus (isolate Cf-TTV10) Viruses 3 33 49
Torque teno douroucouli virus (isolate At-TTV3) Viruses 3 67 67
Torque teno felis virus (isolate Fc-TTV4) Viruses 3 33 35
Torque teno midi virus 1 (isolate MD1-073) Viruses 2 100 81
Torque teno mini virus 1 (isolate TLMV-CBD279) Viruses 3 100 82
Torque teno sus virus 1 (isolate Sd-TTV31) Viruses 3 33 29
Torque teno tamarin virus (isolate So-TTV2) Viruses 4 25 53
Torque teno tupaia virus (isolate Tbc-TTV14) Viruses 3 67 55
Torque teno virus (isolate Chimpanzee/Japan/Pt-TTV6/2000) Viruses 2 100 78
Torque teno virus (isolate Human/China/CT23F/2001) Viruses 4 100 75
Torque teno virus (isolate Human/China/CT39F/2001) Viruses 4 100 78
Torque teno virus (isolate Human/Finland/Hel32/2002) Viruses 6 67 61
Torque teno virus (isolate Human/Germany/KAV/2001) Viruses 3 100 74
Torque teno virus (isolate Human/Ghana/GH1/1996) Viruses 3 67 73
Torque teno virus (isolate Human/Japan/SANBAN/1999) Viruses 2 100 83
Torque teno virus (isolate Human/Japan/TRM1/1999) Viruses 4 100 73
Torque teno virus (isolate Japanese macaque/Japan/Mf-TTV9/2000) Viruses 3 67 73
Torque teno virus (strain VT416) Viruses 3 100 73
Torque teno virus 1 (isolate TA278) Viruses 2 100 78
Torulaspora delbrueckii (strain ATCC 10662 / CBS 1146 / NBRC 0425 / NCYC 2629 / NRRL Y-866) Eukaryota 4966 85 46
Toxoplasma gondii Eukaryota 18246 48 16
Tremblaya princeps (strain PCIT) Eukaryota 121 93 72
Treponema azotonutricium (strain ATCC BAA-888 / DSM 13862 / ZAS-9) Eukaryota 3457 74 55
Treponema brennaborense (strain DSM 12168 / CIP 105900 / DD5/3) Eukaryota 2522 82 56
Treponema denticola (strain ATCC 35405 / CIP 103919 / DSM 14222) Eukaryota 2753 71 53
Treponema pallidum (strain Nichols) Eukaryota 1028 76 55
Treponema pallidum subsp. pallidum (strain Chicago) Eukaryota 981 75 57
Treponema pallidum subsp. pallidum (strain SS14) Eukaryota 1028 77 55
Treponema pallidum subsp. pertenue (strain CDC2) Eukaryota 1065 75 55
Treponema pallidum subsp. pertenue (strain Gauthier) Eukaryota 1065 75 55
Treponema pallidum subsp. pertenue (strain Samoa D) Eukaryota 1065 75 55
Treponema paraluiscuniculi (strain Cuniculi A) Eukaryota 1009 78 56
Treponema primitia (strain ATCC BAA-887 / DSM 12427 / ZAS-2) Eukaryota 3512 76 54
Treponema succinifaciens (strain ATCC 33096 / DSM 2489 / 6091) Eukaryota 2561 74 53
Tribolium castaneum Eukaryota 16502 66 41
Trichinella spiralis Eukaryota 16041 45 32
Trichodesmium erythraeum (strain IMS101) Eukaryota 4342 76 55
Trichomonas vaginalis Eukaryota 50191 49 31
Trichophyton equinum (strain ATCC MYA-4606 / CBS 127.97) Eukaryota 8676 67 39
Trichophyton rubrum (strain ATCC MYA-4607 / CBS 118892) Eukaryota 8705 68 40
Trichophyton tonsurans (strain CBS 112818) Eukaryota 8520 69 40
Trichophyton verrucosum (strain HKI 0517) Eukaryota 8028 69 39
Trichoplax adhaerens Eukaryota 11517 81 48
Trichoplusia ni ascovirus 2c Viruses 161 32 22
Triticum mosaic virus Viruses 1 100 64
Tropheryma whipplei (strain TW08/27) Eukaryota 781 86 65
Tropheryma whipplei (strain Twist) Eukaryota 805 84 65
Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) Eukaryota 2924 83 62
Trypanosoma brucei brucei (strain 927/4 GUTat10.1) Eukaryota 8576 52 26
Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972) Eukaryota 9668 45 24
Trypanosoma congolense (strain IL3000) Eukaryota 5906 40 27
Trypanosoma cruzi Eukaryota 10348 52 26
Trypanosoma cruzi (strain CL Brener) Eukaryota 19242 53 26
Tsukamurella paurometabola (strain ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040) Eukaryota 4170 83 62
Tuber melanosporum (strain Mel28) Eukaryota 7494 69 40
Turkey astrovirus 1 Viruses 3 67 25
Turkey astrovirus 2 Viruses 3 100 43
Turnip crinkle virus Viruses 4 75 58
Turnip mosaic virus (strain Japanese) Viruses 2 50 81
Turnip mosaic virus (strain Quebec) Viruses 2 50 81
Turnip vein-clearing virus Viruses 3 100 71
Turnip yellow mosaic virus Viruses 3 100 60
Turnip yellow mosaic virus (isolate Australia) Viruses 3 100 60
Turnip yellows virus (isolate FL-1) Viruses 6 100 63
Uncinocarpus reesii (strain UAMH 1704) Eukaryota 7760 70 39
Uncultured methanogenic archaeon RC-I Archaea 3071 74 57
Uncultured termite group 1 bacterium phylotype Rs-D17 Eukaryota 767 90 71
Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) Eukaryota 609 73 49
Ureaplasma parvum serovar 3 (strain ATCC 700970) Eukaryota 611 73 49
Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) Eukaryota 646 71 44
Ustilago maydis (strain 521 / FGSC 9021) Eukaryota 6548 74 34
Uukuniemi virus (strain S23) Viruses 4 75 58
Vaccinia virus (strain Copenhagen) Viruses 257 69 71
Vaccinia virus (strain Western Reserve) Viruses 218 86 76
Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) Eukaryota 5352 82 42
Varicella-zoster virus (strain Dumas) Viruses 69 94 64
Varicella-zoster virus (strain Oka vaccine) Viruses 73 95 64
Variola virus (isolate Human/India/Ind3/1967) Viruses 199 88 75
Variovorax paradoxus (strain EPS) Eukaryota 5937 86 64
Variovorax paradoxus (strain S110) Eukaryota 6272 88 66
Veillonella parvula (strain ATCC 10790 / DSM 2008 / JCM 12972 / Te3) Eukaryota 1843 86 65
Venezuelan equine encephalitis virus (strain 3880) Viruses 2 100 67
Venezuelan equine encephalitis virus (strain Mena II) Viruses 3 100 72
Venezuelan equine encephalitis virus (strain P676) Viruses 2 100 67
Venezuelan equine encephalitis virus (strain Trinidad donkey) Viruses 2 100 67
Verminephrobacter eiseniae (strain EF01-2) Eukaryota 4910 86 65
Verrucosispora maris (strain AB-18-032) Eukaryota 5998 78 56
Verticillium albo-atrum (strain VaMs.102 / ATCC MYA-4576 / FGSC 10136) Eukaryota 10233 68 39
Verticillium dahliae (strain VdLs.17 / ATCC MYA-4575 / FGSC 10137) Eukaryota 10530 70 39
Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) Eukaryota 936 93 76
Vesicular exanthema of swine virus serotype A48 (isolate Swine/United States/A48/1948) Viruses 3 100 40
Vesicular stomatitis Indiana virus (strain 85CLB South America) Viruses 6 83 92
Vesicular stomatitis Indiana virus (strain 94GUB Central America) Viruses 6 83 92
Vesicular stomatitis Indiana virus (strain 98COE North America) Viruses 6 83 92
Vesicular stomatitis Indiana virus (strain Glasgow) Viruses 5 80 92
Vesicular stomatitis Indiana virus (strain San Juan) Viruses 6 83 92
Vesicular stomatitis New Jersey virus (strain Ogden subtype Concan) Viruses 6 83 92
Vibrio anguillarum (strain ATCC 68554 / 775) Eukaryota 3720 85 66
Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) Eukaryota 3778 83 67
Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) Eukaryota 4187 81 66
Vibrio cholerae serotype O1 (strain M66-2) Eukaryota 3647 85 68
Vibrio cholerae serotype O1 (strain MJ-1236) Eukaryota 3688 88 67
Vibrio fischeri (strain ATCC 700601 / ES114) Eukaryota 3813 87 66
Vibrio fischeri (strain MJ11) Eukaryota 4034 83 64
Vibrio furnissii (strain DSM 14383 / NCTC 11218) Eukaryota 4440 90 70
Vibrio harveyi (strain ATCC BAA-1116 / BB120) Eukaryota 5605 77 62
Vibrio parahaemolyticus Eukaryota 4820 82 65
Vibrio phage CP-T1 Viruses 70 24 28
Vibrio sp. (strain Ex25) Eukaryota 4514 87 67
Vibrio splendidus (strain LGP32) Eukaryota 4419 84 64
Vibrio vulnificus Eukaryota 4415 87 65
Vibrio vulnificus (strain MO6-24/O) Eukaryota 4549 84 66
Vibrio vulnificus (strain YJ016) Eukaryota 4990 80 63
Vitis vinifera Eukaryota 29834 72 47
Volvox carteri Eukaryota 14334 57 23
Vulcanisaeta distributa (strain DSM 14429 / JCM 11212 / NBRC 100878 / IC-017) Archaea 2493 68 54
Vulcanisaeta moutnovskia (strain 768-28) Archaea 2318 70 55
Waddlia chondrophila (strain ATCC VR-1470 / WSU 86-1044) Eukaryota 1919 70 51
Walleye dermal sarcoma virus Viruses 6 67 19
Weeksella virosa (strain ATCC 43766 / DSM 16922 / JCM 21250 / NBRC 16016 / NCTC 11634 / CL345/78) Eukaryota 2045 79 59
Weissella koreensis (strain KACC 15510) Eukaryota 1346 86 68
West Nile virus Viruses 1 100 87
Western equine encephalitis virus Viruses 2 100 68
Wheat dwarf virus (isolate Sweden) Viruses 4 100 82
White bream virus (isolate Blicca bjoerkna L./Germany/DF24/00) Viruses 5 40 6
White clover cryptic virus 1 (isolate Boccardo/2004) Viruses 2 50 19
White clover mosaic virus (strain M) Viruses 5 100 69
White clover mosaic virus (strain O) Viruses 5 100 68
White spot syndrome virus (isolate Shrimp/China/Tongan/1996) Viruses 531 4 5
Whitewater arroyo virus (isolate Rat/United States/AV 9310135/1995) Viruses 4 100 97
Wigglesworthia glossinidia brevipalpis Eukaryota 612 99 77
Wolbachia pipientis subsp. Culex pipiens (strain wPip) Eukaryota 1161 76 57
Wolbachia pipientis wMel Eukaryota 1159 72 61
Wolbachia sp. subsp. Brugia malayi (strain TRS) Eukaryota 805 78 66
Wolbachia sp. subsp. Drosophila simulans (strain wRi) Eukaryota 1034 83 63
Wolinella succinogenes Eukaryota 2027 86 64
Woodchuck hepatitis B virus (isolate 1) Viruses 5 100 95
Woodchuck hepatitis B virus (isolate 2) Viruses 5 100 95
Woodchuck hepatitis B virus (isolate 59) Viruses 5 100 95
Woodchuck hepatitis B virus (isolate 7) Viruses 5 100 95
Woodchuck hepatitis B virus (isolate 8) Viruses 5 100 95
Woolly monkey hepatitis B virus (isolate Louisville) Viruses 5 100 96
Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) Eukaryota 4971 84 62
Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) Eukaryota 3188 83 62
Xanthomonas axonopodis pv. citri (strain 306) Eukaryota 4352 83 60
Xanthomonas campestris pv. campestris (strain 8004) Eukaryota 4238 84 61
Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) Eukaryota 4127 85 61
Xanthomonas campestris pv. campestris (strain B100) Eukaryota 4410 80 59
Xanthomonas campestris pv. vesicatoria (strain 85-10) Eukaryota 4628 80 59
Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85) Eukaryota 4378 81 57
Xanthomonas oryzae pv. oryzae (strain MAFF 311018) Eukaryota 4203 84 61
Xanthomonas oryzae pv. oryzae (strain PXO99A) Eukaryota 4587 75 61
Xanthomonas phage phiLf Viruses 8 38 26
Xenopus tropicalis Eukaryota 23529 92 48
Xenorhabdus bovienii (strain SS-2004) Eukaryota 4093 75 65
Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6) Eukaryota 4270 76 66
Xenotropic MuLV-related virus (isolate VP35) Viruses 3 100 68
Xenotropic MuLV-related virus (isolate VP42) Viruses 3 100 68
Xenotropic MuLV-related virus (isolate VP62) Viruses 3 100 68
Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07) Eukaryota 3335 82 57
Xylella fastidiosa Eukaryota 2772 65 59
Xylella fastidiosa (strain GB514) Eukaryota 2182 74 62
Xylella fastidiosa (strain M12) Eukaryota 2055 78 63
Xylella fastidiosa (strain M23) Eukaryota 2163 78 62
Xylella fastidiosa (strain Temecula1 / ATCC 700964) Eukaryota 2006 83 63
Yaba monkey tumor virus (strain VR587) Viruses 140 91 77
Yarrowia lipolytica (strain CLIB 122 / E 150) Eukaryota 6415 79 43
Yellow fever virus (isolate Angola/14FA/1971) Viruses 1 100 87
Yellow fever virus (isolate Ethiopia/Couma/1961) Viruses 1 100 87
Yellow fever virus (isolate Ivory Coast/1999) Viruses 1 100 87
Yellow fever virus (isolate Ivory Coast/85-82H/1982) Viruses 1 100 87
Yellow fever virus (isolate Uganda/A7094A4/1948) Viruses 1 100 87
Yellow fever virus (strain 17D vaccine) Viruses 1 100 87
Yellow fever virus (strain French neurotropic vaccine FNV) Viruses 1 100 87
Yellow fever virus (strain Ghana/Asibi/1927) Viruses 1 100 87
Yellow fever virus (strain Trinidad/TRINID79A/1979) Viruses 1 100 87
Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) Eukaryota 4021 92 71
Yersinia enterocolitica subsp. palearctica serotype O:3 (strain DSM 13030 / CIP 106945 / Y11) Eukaryota 4390 85 70
Yersinia enterocolitica subsp. palearctica serotype O:9 / biotype 3 (strain 105.5R(r)) Eukaryota 3982 90 70
Yersinia pestis Eukaryota 5725 82 65
Yersinia pestis (strain D106004) Eukaryota 3642 93 69
Yersinia pestis (strain D182038) Eukaryota 3632 93 69
Yersinia pestis (strain Pestoides F) Eukaryota 3942 89 68
Yersinia pestis (strain Z176003) Eukaryota 3546 93 68
Yersinia pestis bv. Antiqua (strain Angola) Eukaryota 3819 84 69
Yersinia pestis bv. Antiqua (strain Antiqua) Eukaryota 4135 88 68
Yersinia pestis bv. Antiqua (strain Nepal516) Eukaryota 3946 88 68
Yersinia pestis bv. Medievalis (strain Harbin 35) Eukaryota 4293 79 67
Yersinia pseudotuberculosis Eukaryota 4016 90 68
Yersinia pseudotuberculosis serotype IB (strain PB1/+) Eukaryota 4213 85 68
Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) Eukaryota 4305 83 67
Yersinia pseudotuberculosis serotype O:3 (strain YPIII) Eukaryota 4171 85 68
Youcai mosaic virus Viruses 3 100 71
Zaire ebolavirus (strain Kikwit-95) Viruses 10 100 75
Zaire ebolavirus (strain Mayinga-76) Viruses 9 100 74
Zinderia insecticola (strain CARI) Eukaryota 206 95 75
Zobellia galactanivorans (strain DSM 12802 / CIP 106680 / NCIMB 13871 / Dsij) Eukaryota 4708 76 55
Zucchini yellow mosaic virus (strain California) Viruses 2 50 82
Zucchini yellow mosaic virus (strain Reunion Island) Viruses 2 50 82
Zucchini yellow mosaic virus (strain Singapore) Viruses 2 50 82
Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) Eukaryota 4633 74 59
Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) Eukaryota 4987 85 46
Zymomonas mobilis (strain ATCC 31821 / ZM4 / CP4) Eukaryota 1779 88 65
Zymomonas mobilis subsp. mobilis (strain ATCC 10988 / DSM 424 / LMG 404 / NCIMB 8938 / NRRL B-806 / ZM1) Eukaryota 1777 88 65
Zymomonas mobilis subsp. mobilis (strain NCIB 11163) Eukaryota 1884 88 65
Zymomonas mobilis subsp. pomaceae (strain ATCC 29192 / JCM 10191 / NBRC 13757 / NCIMB 11200 / NRRL B-4491) Eukaryota 1740 89 67
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