This section gives details of the Pfam domains that are found on the completed proteome of Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1). You can see details of the proteome in UniProt or at NCBI.
|Number of sequences:||3088|
|Number of domains:||3766|
Below is a listing of the unique domain organisations or architectures particular to this proteome. More...
The graphic that is shown by default represents a sequence containing that particular domain organisation or architecture. The images are order by the frequency that the architecture is observed. Each row contains the following information:
- the number of sequences which exhibit this architecture
a textual description of the architecture, e.g. Gla, EGF x 2, Trypsin.
This example describes an architecture with one
Gladomain, followed by two consecutive
EGFdomains, and finally a single
- a link to the page in the Pfam site showing information about the sequence that the graphic describes
- the UniProt description of the protein sequence
- the number of residues in the sequence
- the Pfam graphic itself.
Note that you can see the family page for a particular domain by clicking on the graphic. You can also choose to see all sequences which have a given architecture by clicking on the Show link in each row.
Finally, because some families can be found in a very large number of architectures, we load only the first fifty architectures by default. If you want to see more architectures, click the button at the bottom of the page to load the next set.
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This section shows the composition of this proteome, in terms of the Pfam domains which are found on its constituent sequences. More...
Each row of the table shows a Pfam domain that was found on one or more of the sequences from this proteome. The two data columns show:
- number of sequences
- the number of distinct protein sequences from this proteome that are found to have the given Pfam domain present
- the number of times that the Pfam domain occurs throughout this proteome
Finally, the 'View graphics' and 'View alignment' columns allow you to view the sequences for a given domain either as a set of Pfam graphics, one per sequence, or as a sequence alignment. The domain graphics and sequence alignment are shown in a separate browser window.
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For those sequences which have a structure in the Protein DataBank, we use the mapping between UniProt, PDB and Pfam coordinate systems from the MSD group, to allow us to map Pfam domains onto UniProt three-dimensional structures. The table below shows the structures on which the x domain has been found.
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